ci37.yml

name: CI

on: ["push", "pull_request"]

jobs:
  build:

    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: [3.7]

    steps:
      - uses: actions/checkout@v2
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install pytest pytest-mock pytest-cov
          pip install -r requirements.txt
          python setup.py install
          python -m pip install fcsparser tensorflow==1.15 fcswrite gpflow protobuf==3.20
          git clone https://github.com/KrishnaswamyLab/SAUCIE
          git clone https://github.com/ManchesterBioinference/GrandPrix
          cd GrandPrix
          python setup.py install
          cd ..
          git clone https://github.com/epierson9/ZIFA
          cd ZIFA
          python setup.py install
          cd ..
      - name: Test with pytest
        run: |
          pytest --cov CytofDR --cov-report xml
      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v2
        with:
          fail_ci_if_error: false