feat: print out PCR% by logger

js2264 · js2264 · commit 4b7b9e29a9bd · 2024-02-14T20:32:12.000+01:00
diff --git a/hicstuff/pipeline.py b/hicstuff/pipeline.py
@@ -312,6 +312,9 @@ def filter_pcr_dup(pairs_idx_file, filtered_file):
             "%d%% PCR duplicates have been filtered out (%d / %d pairs) "
             % (100 * round(filter_count / reads_count, 3), filter_count, reads_count)
         )
+        logger.info(
+            "%d pairs remaining after removing PCR duplicates", reads_count - filter_count
+        )
 
 
 def pairs2cool(pairs_file, cool_file, bins_file, exclude):

Original file line number	Diff line number	Diff line change
`@@ -312,6 +312,9 @@ def filter_pcr_dup(pairs_idx_file, filtered_file):`
`312`	`312`	`"%d%% PCR duplicates have been filtered out (%d / %d pairs) "`
`313`	`313`	`% (100 * round(filter_count / reads_count, 3), filter_count, reads_count)`
`314`	`314`	`)`
	`315`	`+ logger.info(`
	`316`	`+ "%d pairs remaining after removing PCR duplicates", reads_count - filter_count`
	`317`	`+ )`
`315`	`318`
`316`	`319`
`317`	`320`	`def pairs2cool(pairs_file, cool_file, bins_file, exclude):`