Skip to content

Commit 4d62c96

Browse files
committed
Update docs manually after v1.7.1 release (with sphinx 3.5.4 and RTD theme 0.5.1)
1 parent 638111a commit 4d62c96

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

55 files changed

+18337
-5356
lines changed

Diff for: _sources/attributes.rst.txt

+9-7
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
1-
===================== ==================================================================== ================ ========================
2-
Name Description Units Data type
3-
===================== ==================================================================== ================ ========================
1+
===================== ==================================================================== ================ ================================
2+
Name Description Units Data type
3+
===================== ==================================================================== ================ ================================
44
`aonames`_ atomic orbital names list of strings
55
`aooverlaps`_ atomic orbital overlap matrix array of rank 2
66
`atombasis`_ indices of atomic orbitals on each atom list of lists
@@ -14,7 +14,7 @@
1414
`coreelectrons`_ number of core electrons in atom pseudopotentials array of rank 1
1515
`dispersionenergies`_ a molecular dispersion energy corrections eV array of rank 1
1616
`enthalpy`_ sum of electronic and thermal enthalpies hartree/particle float
17-
`entropy`_ entropy hartree/particle float
17+
`entropy`_ entropy (float, hartree/ particle*kelvin
1818
`etenergies`_ energies of electronic transitions 1/cm array of rank 1
1919
`etoscs`_ oscillator strengths of electronic transitions array of rank 1
2020
`etdips`_ electric transition dipoles of electronic transitions ebohr array of rank 2
@@ -44,6 +44,7 @@
4444
`natom`_ number of atoms integer
4545
`nbasis`_ number of basis functions integer
4646
`nmo`_ number of molecular orbitals integer
47+
`nmrtensors`_ Nuclear magnetic resonance chemical shielding tensors dict of dicts of array of rank 2
4748
`nocoeffs`_ natural orbital coefficients array of rank 2
4849
`nooccnos`_ natural orbital occupation numbers array of rank 1
4950
`nsocoeffs`_ natural spin orbital coefficients list of array of rank 2
@@ -54,8 +55,8 @@
5455
`pressure`_ pressure used for Thermochemistry atm float
5556
`scancoords`_ geometries of each scan step angstroms array of rank 3
5657
`scanenergies`_ energies of potential energy surface list
57-
`scannames`_ names of varaibles scanned list of strings
58-
`scanparm`_ values of parameters in potential energy surface list of lists
58+
`scannames`_ names of variables scanned list of strings
59+
`scanparm`_ values of parameters in potential energy surface list of tuples
5960
`scfenergies`_ molecular electronic energies after SCF (Hartree-Fock, DFT) eV array of rank 1
6061
`scftargets`_ targets for convergence of the SCF array of rank 2
6162
`scfvalues`_ current values for convergence of the SCF list of arrays of rank 2
@@ -71,7 +72,7 @@
7172
`vibrmasses`_ reduced masses of vibrations daltons array of rank 1
7273
`vibsyms`_ symmetries of vibrations list of strings
7374
`zpve`_ zero-point vibrational energy correction hartree/particle float
74-
===================== ==================================================================== ================ ========================
75+
===================== ==================================================================== ================ ================================
7576

7677
.. _`aonames`: data_notes.html#aonames
7778
.. _`aooverlaps`: data_notes.html#aooverlaps
@@ -116,6 +117,7 @@
116117
.. _`natom`: data_notes.html#natom
117118
.. _`nbasis`: data_notes.html#nbasis
118119
.. _`nmo`: data_notes.html#nmo
120+
.. _`nmrtensors`: data_notes.html#nmrtensors
119121
.. _`nocoeffs`: data_notes.html#nocoeffs
120122
.. _`nooccnos`: data_notes.html#nooccnos
121123
.. _`nsocoeffs`: data_notes.html#nsocoeffs

Diff for: _sources/attributes_dev.rst.txt

+9-7
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
1-
===================== ==================================================================== ================ ========================
2-
Name Description Units Data type
3-
===================== ==================================================================== ================ ========================
1+
===================== ==================================================================== ================ ================================
2+
Name Description Units Data type
3+
===================== ==================================================================== ================ ================================
44
`aonames`_ atomic orbital names list of strings
55
`aooverlaps`_ atomic orbital overlap matrix array of rank 2
66
`atombasis`_ indices of atomic orbitals on each atom list of lists
@@ -14,7 +14,7 @@
1414
`coreelectrons`_ number of core electrons in atom pseudopotentials array of rank 1
1515
`dispersionenergies`_ a molecular dispersion energy corrections eV array of rank 1
1616
`enthalpy`_ sum of electronic and thermal enthalpies hartree/particle float
17-
`entropy`_ entropy hartree/particle float
17+
`entropy`_ entropy (float, hartree/ particle*kelvin
1818
`etenergies`_ energies of electronic transitions 1/cm array of rank 1
1919
`etoscs`_ oscillator strengths of electronic transitions array of rank 1
2020
`etdips`_ electric transition dipoles of electronic transitions ebohr array of rank 2
@@ -44,6 +44,7 @@
4444
`natom`_ number of atoms integer
4545
`nbasis`_ number of basis functions integer
4646
`nmo`_ number of molecular orbitals integer
47+
`nmrtensors`_ Nuclear magnetic resonance chemical shielding tensors dict of dicts of array of rank 2
4748
`nocoeffs`_ natural orbital coefficients array of rank 2
4849
`nooccnos`_ natural orbital occupation numbers array of rank 1
4950
`nsocoeffs`_ natural spin orbital coefficients list of array of rank 2
@@ -54,8 +55,8 @@
5455
`pressure`_ pressure used for Thermochemistry atm float
5556
`scancoords`_ geometries of each scan step angstroms array of rank 3
5657
`scanenergies`_ energies of potential energy surface list
57-
`scannames`_ names of varaibles scanned list of strings
58-
`scanparm`_ values of parameters in potential energy surface list of lists
58+
`scannames`_ names of variables scanned list of strings
59+
`scanparm`_ values of parameters in potential energy surface list of tuples
5960
`scfenergies`_ molecular electronic energies after SCF (Hartree-Fock, DFT) eV array of rank 1
6061
`scftargets`_ targets for convergence of the SCF array of rank 2
6162
`scfvalues`_ current values for convergence of the SCF list of arrays of rank 2
@@ -71,7 +72,7 @@
7172
`vibrmasses`_ reduced masses of vibrations daltons array of rank 1
7273
`vibsyms`_ symmetries of vibrations list of strings
7374
`zpve`_ zero-point vibrational energy correction hartree/particle float
74-
===================== ==================================================================== ================ ========================
75+
===================== ==================================================================== ================ ================================
7576

7677
.. _`aonames`: data_notes.html#aonames
7778
.. _`aooverlaps`: data_notes.html#aooverlaps
@@ -116,6 +117,7 @@
116117
.. _`natom`: data_notes.html#natom
117118
.. _`nbasis`: data_notes.html#nbasis
118119
.. _`nmo`: data_notes.html#nmo
120+
.. _`nmrtensors`: data_notes.html#nmrtensors
119121
.. _`nocoeffs`: data_notes.html#nocoeffs
120122
.. _`nooccnos`: data_notes.html#nooccnos
121123
.. _`nsocoeffs`: data_notes.html#nsocoeffs

Diff for: _sources/changelog.rst.txt

+34-1
Original file line numberDiff line numberDiff line change
@@ -4,14 +4,47 @@
44
Changelog
55
=========
66

7+
Changes in cclib-1.7.1
8+
----------------------
9+
10+
**Features**
11+
12+
* New parser: formatted checkpoint files
13+
* New attribute: nmrtensors for nuclear magnetics resonance chemical shielding tensors (Jonathon Vandezande)
14+
* Support atomcharges and atomspins for APT charges in Gaussian (Elliot Farrar)
15+
* Support scannames and scanparms for ORCA logfiles
16+
* Support geometry optimization output and metadata in Turbomole (Oliver Lee)
17+
* Support moments, homos, mosyms, and moenergies in Turbomole (Oliver Lee)
18+
* Support mpenergies and ccenergies in Turbomole (Oliver Lee)
19+
* Support excited state attributes for TD-DFT, CC2 and ADC(2) methods in Turbomole (Oliver Lee)
20+
* Support scfenergies, grad, hessian, atommasses, etenergies and etsyms for fchk output (Javier Cerezo)
21+
* Support zpve for QChem, GAMESS, Psi4, Jaguar, ORCA, DALTON, ADF, GAMESSUK, Molcas and Molpro
22+
* Support walltime and cpu time metadata for QChem output (Amanda Dumi)
23+
* Support walltime and cpu time metadata for Gaussian output (Ellior Farrar)
24+
* Support point group metadata in DALTON
25+
* Plumbed through gbasis and mocoeffs to pyscf bridge (Amanda Dumi)
26+
* Added MO symmetry to Molden writer (Amanda Dumi)
27+
28+
**Bugfixes**
29+
30+
* Improved parsing and testing enthalpy and freeenergy (Felipe Schneider)
31+
* Fixed parsing ONION output for Gaussian (Elliot Farrar)
32+
* Fixed parsing of GAMESS logfiles with more than 100 SCF iterations (simonaxelrod)
33+
* Fixed parsing of very long (10K+) ORCA logfiles (Alex Maldonado)
34+
* Fixed parsing of Turbomole outputs that don't compute SCF energies (Oliver Lee)
35+
* Fixed parsing natural charges in Gaussian output
36+
* Fixed parsing vibrational analysis (last, not first) in QChem
37+
* Fixed indices for open shell systems in QChem (Hubert Weißmann)
38+
* Cleaned up Turbomole unit test logfiles (froessler)
39+
* Updated documentation for grads (Cyrille Lavigne)
40+
741
Changes in cclib-1.7
842
--------------------
943

1044
**Features**
1145

1246
* Dropping support for Python 2
1347
* SciPy is now a hard dependency for cclib
14-
* New parser: formatted checkpoint files (QChem only right now)
1548

1649
**Bugfixes**
1750

0 commit comments

Comments
 (0)