dockerfile creation and install requirements updated

Author: ashleymaeconard

Dockerfile

@@ -8,16 +8,41 @@ RUN mkdir -p /srv/shiny-server
 RUN apt-get update && apt-get install -y \
     libcurl4-gnutls-dev \
     libssl-dev \
-    libel-parser-perl \
+    libxml-parser-perl
+#    libel-parser-perl
 
 # Install R packages
-RUN R -e 'install.packages(c("shiny","visNetwork","shinydashboard", "ggplot2"))'
+RUN R -e 'install.packages("devtools", repos="http://cran.us.r-project.org", dependencies = TRUE)'
+RUN R -e 'install.packages("shiny", version = "1.7.1", repos="http://cran.us.r-project.org")'
+RUN R -e 'install.packages("visNetwork", version = "2.1.0", repos="http://cran.us.r-project.org")'
+RUN R -e 'install.packages("igraph", version = "1.3.5", repos="http://cran.us.r-project.org")'
+RUN R -e 'install.packages("dplyr", version = "1.0.2", repos="http://cran.us.r-project.org")'
+RUN R -e 'install.packages("shinyBS", version = "0.61", repos="http://cran.us.r-project.org")'
+RUN R -e 'install.packages("shinythemes", version = "1.2.0", repos="http://cran.us.r-project.org")'
+RUN R -e 'install.packages("shinydashboard", version = "0.7.2", repos="http://cran.us.r-project.org")'
+RUN R -e 'install.packages("shinydashboardPlus", version = "2.0.3", repos="http://cran.us.r-project.org")'
+RUN R -e 'install.packages("shinyWidgets", version = "0.7.4", repos="http://cran.us.r-project.org")'
+RUN R -e 'install.packages("shinyjs", version = "2.1.0", repos="http://cran.us.r-project.org")'
+RUN R -e 'install.packages("BANN")'
 
 # Copy contents of app directory
-COPY ./app/app.R /srv/shiny-server/
-COPY ./app/scripts /srv/shiny-server/
-COPY ./app/www /srv/shiny-server/
-COPY ./data /srv/shiny-server/
+
+COPY ./app /srv/shiny-server/
+COPY ./BANNs /srv/shiny-server/
+COPY ./example_data /srv/shiny-server/
+COPY ./multioviz /srv/shiny-server/
+COPY ./runMultioviz.R /srv/shiny-server/
+COPY ./setupMultioviz.sh /srv/shiny-server/
+COPY ./README.md /srv/shiny-server/
+COPY ./R_PACKAGE_DIRECTIONS /srv/shiny-server/
+COPY ./demo.R /srv/shiny-server/
+COPY ./load_multioviz.R /srv/shiny-server/
+COPY ./load_packages.R /srv/shiny-server/
+
+COPY ./multio-viz.Rproj /srv/shiny-server/
+COPY ./multio-viz_res /srv/shiny-server/
+COPY ./own_computational_method.R /srv/shiny-server/
 
 # Run app
-CMD ["/usr/bin/shiny-server"]
+EXPOSE 3838
+CMD ["/usr/bin/shiny-server"]

load_multioviz.R

@@ -1,4 +1,3 @@
-install.packages("devtools", repos="http://cran.us.r-project.org") # nolint
 library(devtools)
 devtools::load_all()
 devtools::install()

setupMultioviz.sh

@@ -1,5 +1,4 @@
+Rscript load_packages.R
 git clone https://github.com/lcrawlab/BANNs.git
 R CMD INSTALL BANNs/BANN_R/BANN_0.1.0.tar.gz
-Rscript load_packages.R
-cd multioviz
-Rscript ../load_multioviz.R
+Rscript load_multioviz.R