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index.html
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---
layout: default
title: Home
---
<!-- begin marketing header -->
<header class="marketing-hero" id="bg-image-main">
<div class="row homepage text-center">
<div class="small-12 columns bg-image-text-container">
<h1 class="hide-for-small-only hero-main-header small-12">The Open Microscopy Environment</h1>
<h1 class="show-for-small-only hero-main-header"><img src="{{ site.baseurl }}/img/logos/ome-white.svg" alt="OME logo" class="logo-hero" /></h1>
<p class="hero-subheader small-10 small-offset-1 medium-6 medium-offset-3">OME is a consortium of universities, research labs, industry and developers producing open-source software and format standards for microscopy data.</p>
<br>
<a href="{{ site.baseurl }}/about/" class="large button sites-button btn-red">Learn More</a>
</div>
</div>
</header>
<!-- end marketing header -->
<!-- begin OMERO highlight -->
<hr class="whitespace">
<div class="row column text-center">
<h2><img src="{{ site.baseurl }}/img/logos/omero.svg" alt="OMERO logo" class="section-title-logo" /></h2>
<p class="subheader small-12 medium-6 medium-offset-3">OMERO is client-server software for managing, visualizing and analyzing microscopy images and associated metadata.</p>
</div>
<hr class="medium-10">
{% include omero-users.html %}
<!-- end OMERO highlight -->
<!-- begin Bio-Formats highlight -->
<hr class="whitespace">
<div class="row column text-center">
<h2><img src="{{ site.baseurl }}/img/logos/bio-formats.svg" alt="Bio-Formats logo" class="section-title-logo" /></h2>
<h5 class="subheader">Bio-Formats is a Java library for reading and writing image files, which can be used as a plugin for many analysis and informatics solutions or incorporated into your own software.</h5>
</div>
<hr>
<div class="row column text-center">
<p>Bio-Formats is a software tool for reading and writing image data, with a standardized application interface that supports open-source analysis programs like ImageJ and CellProfiler, informatics solutions like OMERO, and commercial programs like MATLAB. It supports over 140 file formats including High Content Screening formats, time lapse imaging and digital pathology. Bio-Formats is a community driven project and we always welcome your input.</p>
<a href="{{ site.baseurl }}/bio-formats/">Get started with Bio-Formats <i class="fa fa-long-arrow-right"></i></a>
</div>
<!-- end Bio-Formats highlight -->
<!-- begin OME Files highlight -->
<hr class="whitespace">
<div class="row column text-center">
<h2><img src="{{ site.baseurl }}/img/logos/ome-files.svg" alt="OME Files logo" class="section-title-logo" /></h2>
<h5 class="subheader">OME Files is a reference implementation of the OME data model and the OME-TIFF file format for developers to use in their own software.</h5>
</div>
<hr>
<div class="row column text-center">
<p>OME Files is a package of tools for reading and writing the standard OME-TIFF file format and working with the OME data model, which builds upon what began as a native C++ implementation of Bio-Formats. Potential uses include export of images using OME-TIFF, saving of acquired image data in OME-TIFF, reading metadata and image data from OME-TIFF for visualization and analysis, or use of the data model metadata APIs for handling metadata.</p>
<a href="{{ site.baseurl }}/ome-files/">Get started with OME Files <i class="fa fa-long-arrow-right"></i></a>
</div>
<!-- end OME Files highlight -->
<!-- begin Imaging highlight>
<hr class="whitespace">
<div class="row column text-center">
<h2>Imaging Domains</h2>
<h5 class="subheader">The field of imaging just keep getting more complex but OME tools keep evolving too - from extending file format support via Bio-Formats and additions to the OME data model to support new domains, to improving support for visualization in OMERO clients, we’re always innovating for the community.</h5>
</div>
<hr>
<div class="row small-up-2 large-up-1">
<div class="column">
<p>OME tools support images from slide scanners, HCS, timelapse/SPIM, EM, FLIM, single-molecule localization, and we're currently extending support for tabular and other non-image data.</p>
<p style="color:red;">Probably add an image collage or something here? And a domain subpage?</p>
<img class="thumbnail" alt="still to be added" src="http://placehold.it/1000x300">
<a href="#" class="button small center">Learn More</a>
</div>
</div>
<end Big Image highlight -->
<!-- begin Sites Powered by OME Technology -->
<hr class="whitespace">
<div class="row column text-center">
<h2>Sites Powered by OME Technology</h2>
</div>
<hr>
<div id="powered-sites" class="row medium-up-4 large-up-5">
<div class="column"><a href="http://jcb-dataviewer.rupress.org/" target="_blank"><img class="thumbnail their-logo" src="img/logos/user_jcb.gif" alt="The Journal of Cell Biology"></a></div>
<div class="column"><a href="http://www.cellimagelibrary.org/" target="_blank"><img class="thumbnail their-logo" src="img/logos/user_ascb.gif" alt="Cell Image Library"></a></div>
<div class="column"><a href="http://www.stowers.org/research/publications/odr" target="_blank"><img class="thumbnail their-logo" src="img/logos/user_stowers.gif" alt="Stowers Institute for Medical Research"></a></div>
<div class="column"><a href="http://lincs.hms.harvard.edu/" target="_blank"><img class="thumbnail their-logo" src="img/logos/user_lincs.gif" alt="LINCS"></a></div>
<div class="column"><a href="http://ssbd.qbic.riken.jp/" target="_blank"><img class="thumbnail their-logo" src="img/logos/user_ssbd.gif" alt="SSBD Database"></a></div>
<div class="column"><a href="http://www.ebi.ac.uk/pdbe/emdb/index.html/" target="_blank"><img class="thumbnail their-logo" src="img/logos/user_pdbe.gif" alt="Protein Data Bank Europe"></a></div>
<div class="column"><a href="http://movincell.org/" target="_blank"><img class="thumbnail their-logo" src="img/logos/user_movincell.gif" alt="Movincell"></a></div>
<div class="column"><a href="https://idr.openmicroscopy.org/about/" target="_blank"><img class="thumbnail their-logo" src="img/logos/user_idr.gif" alt="IDR"></a></div>
<div class="column"><a href="https://human-embryology.org/wiki/Main_Page" target="_blank"><img class="thumbnail their-logo" src="img/logos/user_dec.jpg" alt="Digital Embryology Consortium"></a></div>
</div>
<!-- end Sites Powered by OME Technology -->
<!-- begin Many Thanks -->
<hr class="whitespace">
<div class="row column text-center">
<h2>Many Thanks</h2>
</div>
<hr>
<div id="thank-you-sites" class="row medium-up-5 large-up-5">
<div class="column"><a href="https://github.com/openmicroscopy" target="_blank"><img class="thumbnail their-logo" src="img/logos/thanks_github.gif" alt="GitHUb"></a></div>
<div class="column"><a href="https://trac.openmicroscopy.org/" target="_blank"><img class="thumbnail their-logo" src="img/logos/thanks_trac.gif" alt="Trac"></a></div>
<div class="column"><a href="https://ci.openmicroscopy.org/" target="_blank"><img class="thumbnail their-logo" src="img/logos/thanks_jenkins.gif" alt="Jenkins"></a></div>
<div class="column"><a href="https://travis-ci.org/openmicroscopy/openmicroscopy" target="_blank"><img class="thumbnail their-logo" src="img/logos/thanks_travis.gif" alt="Travis"></a></div>
<div class="column"><a href="http://www.agilosoftware.com/" target="_blank"><img class="thumbnail their-logo" src="img/logos/thanks_agilo.gif" alt="Agilo"></a></div>
</div>
<hr class="whitespace">
<!-- end Many Thanks -->
<hr class="whitespace">