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test tutorial test
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3 files changed

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tutorials/force_fields/__init__.py

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{
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"cells": [
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "initial_id",
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"metadata": {
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"collapsed": true
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},
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"outputs": [],
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"source": [
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"from pathlib import Path\n",
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"TEST_ROOT = Path(__file__).parent.parent / \"tests\"\n",
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"TEST_DIR = TEST_ROOT / \"test_data\""
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]
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},
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{
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"metadata": {},
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"cell_type": "code",
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"outputs": [],
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"execution_count": null,
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"source": [
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"from pymatgen.core.structure import Structure\n",
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"si_structure = Structure.from_file(TEST_DIR / \"structures\" / \"Si.cif\")"
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],
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"id": "59d1925b6558c9bb"
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},
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{
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"metadata": {},
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"cell_type": "code",
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"outputs": [],
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"execution_count": null,
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"source": [
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"from atomate2.forcefields.flows.phonons import PhononMaker\n",
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"from jobflow import run_locally\n",
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"flow=PhononMaker(\n",
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" min_length=3.0,\n",
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" born_maker=None,\n",
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" use_symmetrized_structure=\"conventional\",\n",
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" create_thermal_displacements=False,\n",
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" store_force_constants=False,\n",
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" prefer_90_degrees=False,\n",
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" generate_frequencies_eigenvectors_kwargs={\"tstep\": 100},\n",
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" ).make(si_structure)\n",
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"run_locally(flow, store=job_store,create_folders=True, raise_immediately=True)"
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],
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"id": "83e78705d60d7c9b"
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},
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{
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"metadata": {},
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"cell_type": "code",
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"outputs": [],
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"execution_count": null,
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"source": "",
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"id": "bf10b23db3655278"
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}
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],
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"metadata": {
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"kernelspec": {
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"display_name": "Python 3",
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"language": "python",
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"name": "python3"
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},
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"language_info": {
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"codemirror_mode": {
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"name": "ipython",
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"version": 2
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},
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"file_extension": ".py",
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"mimetype": "text/x-python",
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython2",
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"version": "2.7.6"
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}
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},
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"nbformat": 4,
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"nbformat_minor": 5
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}

tutorials/phonon_workflow.ipynb

+50-62
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