Merge branch 'master' into fix-local_env-rename

Author: DanielYang59

src/pymatgen/io/common.py

@@ -475,38 +475,38 @@ def reset(self):
         changed.
         """
         # Note that py3.12 has Path.walk(). But we need to use os.walk to ensure backwards compatibility for now.
-        self.files = [str((Path(d) / f).relative_to(self.path)) for d, _, fnames in os.walk(self.path) for f in fnames]
-
-        self._parsed_files: dict[str, Any] = {}
+        self._files: dict[str, Any] = {
+            str((Path(d) / f).relative_to(self.path)): None for d, _, fnames in os.walk(self.path) for f in fnames
+        }
 
     def __contains__(self, item):
-        return item in self.files
+        return item in self._files
 
     def __len__(self):
-        return len(self.files)
+        return len(self._files)
 
     def __iter__(self):
-        return iter(self.files)
+        return iter(self._files)
 
     def __getitem__(self, item):
-        if item in self._parsed_files:
-            return self._parsed_files[item]
+        if self._files.get(item):
+            return self._files.get(item)
         fpath = self.path / item
 
         if not (self.path / item).exists():
-            raise ValueError(f"{item} not found in {self.path}. List of files are {self.files}.")
+            raise ValueError(f"{item} not found in {self.path}. List of files are {self._files.keys()}.")
 
         for k, cls_ in PMGDir.FILE_MAPPINGS.items():
             if k in item:
                 modname, classname = cls_.rsplit(".", 1)
                 module = importlib.import_module(modname)
                 class_ = getattr(module, classname)
                 try:
-                    self._parsed_files[item] = class_.from_file(fpath)
+                    self._files[item] = class_.from_file(fpath)
                 except AttributeError:
-                    self._parsed_files[item] = class_(fpath)
+                    self._files[item] = class_(fpath)
 
-                return self._parsed_files[item]
+                return self._files[item]
 
         warnings.warn(
             f"No parser defined for {item}. Contents are returned as a string.",
@@ -522,7 +522,7 @@ def get_files_by_name(self, name: str) -> dict[str, Any]:
         Returns:
             {filename: object from PMGDir[filename]}
         """
-        return {f: self[f] for f in self.files if name in f}
+        return {f: self[f] for f in self._files if name in f}
 
     def __repr__(self):
         return f"PMGDir({self.path})"

tests/io/test_common.py

@@ -33,7 +33,7 @@ def test_getitem(self):
 
         d = PMGDir(f"{TEST_FILES_DIR}/io/vasp/fixtures/scan_relaxation")
         assert len(d) == 2
-        assert "vasprun.xml.gz" in d.files
+        assert "vasprun.xml.gz" in d
         assert "OUTCAR" in d
         assert d["vasprun.xml.gz"].incar["METAGGA"] == "R2scan"
 
@@ -57,4 +57,5 @@ def test_getitem(self):
         assert all("OUTCAR" for k in outcars)
 
         d.reset()
-        assert len(d._parsed_files) == 0
+        for v in d._files.values():
+            assert v is None