Using four different frameworks, a dashboard for plotting BOLD timecourses from functional MRI data is implemented. It is realised using Streamlit, Dash, Bokeh and HoloViz. More details available in these posts: part 1 and part 2.
To run the dashboards, you need python (3.7) and the following packages:
streamlit(0.79.0);plotly(4.14.3);dash(1.19.0);dash-core-components(1.15.0);dash-html-components(1.1.2);matplotlib(3.1.2);nibabel(3.0.0);numpy(1.18.4);panel(0.11.2);bokeh(2.3.0).
The code was tested on macOS 10.15.7.
Some things to keep in mind:
- in the HoloViz implementation, the first plotting function uses the image object defined later in the code - the ideal solution would be to pass the reference as a parameter to the function, but it leads to an error when called through
panel.interact. If you have solution, please get in touch!