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column_descriptions.csv

update README.md and column_descriptions.csv

Oct 17, 2023

27a469a · Oct 17, 2023

1	Output Column	Description
2	organism_name	Name of organism
3	num_unique_kmers_in_genome_sketch	Count of distinct k-mers in sketched genome
4	num_total_kmers_in_genome_sketch	Total number of k-mers in genome sketch
5	scale_factor	Scale factor
6	num_exclusive_kmers_in_sample_sketch	Count of distinct k-mers in sketched sample
7	num_total_kmers_in_sample_sketch	Total number of k-mers in sample sketch
8	min_coverage	Minimum coverage parameter
9	in_sample_est	Boolean indicating whether genome is present in sample
10	p_vals	Probability of observing this or more extreme result at ANI threshold
11	num_exclusive_kmers_to_genome	Number of k-mers that are exclusive to genome
12	num_exclusive_kmers_to_genome_coverage	Number of k-mers exclusive to genome, multiplied by min_coverage parameter
13	num_matches	Size of intersection between exclusive k-mers and sample
14	acceptance_threshold_wo_coverage	Acceptance threshold without adjusting for coverage
15	acceptance_threshold_with_coverage	Acceptance threshold adjusted for coverage
16	actual_confidence_wo_coverage	Actual confidence without adjusting for coverage
17	actual_confidence_with_coverage	Actual confidence adjusted for coverage
18	alt_confidence_mut_rate_wo_coverage	Mutation rate such that at this mutation rate, false positive rate = p_val. Does not account for min_coverage parameter.
19	alt_confidence_mut_rate_with_coverage	Mutation rate such that at this mutation rate, false positive rate = p_val, accounting for min_coverage parameter.