Add Singularity recipe

Author: mlell

Singularity

@@ -0,0 +1,49 @@
+BootStrap: debootstrap
+OSVersion: stable
+MirrorURL: https://snapshot.debian.org/archive/debian/20180423T161605Z
+
+%labels 
+Maintainer Moritz Lell
+
+%environment
+LC_ALL="en_US.UTF-8"
+PATH="/opt/tapas/scripts:$PATH"
+export LC_ALL PATH
+
+%post
+
+apt-get update
+apt-get install -y --no-install-recommends locales
+
+# Configure default locale
+echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen
+locale-gen en_US.utf8
+/usr/sbin/update-locale LANG=en_US.UTF-8
+
+export LC_ALL=en_US.UTF-8
+export LANG=en_US.UTF-8
+
+# bsdmainutils: For column command
+# curl:         For downloading TAPAS
+# pandoc, samtools: For creating the manual  
+apt-get install --no-install-recommends -y r-base r-base-dev \
+  python3 python3-dev python3-pip python3-wheel python3-setuptools \
+  bsdmainutils pandoc samtools curl
+
+update-alternatives --install /usr/bin/python python /usr/bin/python3.5 1
+update-alternatives --install /usr/bin/pip    pip /usr/bin/pip3 1
+
+# Remove package cache
+rm -rf /var/lib/apt/lists/*
+
+cd /opt
+curl -L https://github.com/mlell/tapas/archive/refs/heads/master.zip > tapas.zip
+unzip tapas.zip
+rm tapas.zip
+mv tapas-master tapas
+
+cd tapas/scripts/gen
+./install_dependencies
+
+
+