Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

read simulation hangs with unwrapped fasta input file #6

Open
jlapaijmans opened this issue Oct 12, 2021 · 1 comment
Open

read simulation hangs with unwrapped fasta input file #6

jlapaijmans opened this issue Oct 12, 2021 · 1 comment

Comments

@jlapaijmans
Copy link

When the input fasta file is not wrapped (ie 80 chars per line), the read simulation just hangs but doesn't give an error message..? Assuming this happens for everyone, not just me, would be good to include a quick fasta check and an exit with message if the fasta entry is not wrapped.

Solution: wrap your fasta input file using eg.
seqtk seq -l80 input.fasta

@mlell
Copy link
Owner

mlell commented Oct 13, 2021

That is strange. Do you have a test file and a call to isolate the problem?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants