3.8.4

Fix readme at pypi

3.8.3

Fix (upload) to pypi

3.8.2

Triplexiblity fixed (?) full atom works.

Full Changelog: 3.8.1...3.8.2

3.8.1

Fix (?)* triplexibility

• ok, not fixed by then

Full Changelog: 3.8...3.8.1

3.8 rna-tools.online

Add a new interface to the rna-tools http://rna-tools.online to help in your modeling workflow. #124

Lots of small fixes for that. Other areas of development: md / mq / web.

Full Changelog: 3.7.22...3.8

3.7.22

rna_tools_lib: super fast --un-nmr! (not based on BioPython but on text processing) perfect for molecular dynamics ;-) quick and dirty analyses

    rna_pdb_toolsx.py --un-nmr AF-Q5TCX8-F1-model_v1_core_Ctrim_mdr_MD.pdb
    cat *MD_* > md.pdb

for benchmarks of MD

2lkr_short_mdr.pdb.zip

3.7.21

• mq/rna_mq_collect.py: --list-of-files for one script for all!
• mq/rna_mq_wx_collect.py: massive mq_collect.py

3.7.20

• mq (mqapRNA):

  • farfar2 up tests
  • rna_mq_collect.py: if in ignored files error, run again
  • FARNA: fix headers, add -min for lores, add constant_seed, add system
  • FARNA: fix tests, on mac keep two rosettas!

• md (molecule dynamics)

  • rename for rna_md.py

3.7.19

• df: utils, merge sets of dfs widewise
• rna_calc_rmsd.py: add --name-rmsd-column
• plotting/rna_plot_boxplotlike.py: add

3.7.18

• Update setup.py fix missing rna_tools/tools/md/rna_minimize.py