STAR/2.7.10b added

Author: AIqbal94

v4.0.2/Dockerfile

@@ -0,0 +1,48 @@
+# Copyright (c) Bioinformatics Core Facility of the Max Planck Institute for Biology of Ageing.
+# Distributed under the terms of the Modified BSD License.
+
+FROM mpgagebioinformatics/bioinformatics_software:v4.0.1
+LABEL maintainer "[email protected]"
+USER root
+
+#########################################
+#### Bioinformatics tools start here ####
+#########################################
+
+RUN apt-get update && \ 
+  apt-get install -yq \
+  libssl-dev \
+  libcurl4-openssl-dev \
+  libgeos-c1v5 \
+  libgeos-dev \
+  libudunits2-dev \
+  libudunits2-0 \
+  libpng16-16 \
+  libpng-dev \
+  acl \
+  libxml-libxml-perl \
+  libjpeg-dev && \
+  apt-get clean && rm -rf /var/lib/apt/lists/*
+
+
+### Adding STAR module
+
+# star
+RUN cd $SOUR && \
+  wget https://github.com/alexdobin/STAR/archive/refs/tags/2.7.10b.tar.gz && \
+  tar -xzf 2.7.10b.tar.gz && \
+  cd STAR-2.7.10b && \
+  mkdir -p $SOFT/star/2.7.10b/bin && \
+  cp -r bin/Linux_x86_64_static/* $SOFT/star/2.7.10b/bin && \
+  newmod.sh \
+  -s star \
+  -p $MODF/bioinformatics/ \
+  -v 2.7.10b && \
+  rm -rf ${SOUR}/*
+
+##########################
+#### this part to end ####
+##########################
+RUN mkdir -p /Dockerfiles/v4.0.2
+COPY Dockerfile /Dockerfiles/v4.0.2
+USER $NB_USER