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docs/NextFlow/metagenomics.md

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If you use this workflow and end up publishing something, please consider including a reference to our work! 😎🙏
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Macowan, M., Pattaroni, C., & Marsland, B. (2025). nf-mucimmuno/metagenomics (0.1.0). Zenodo. https://doi.org/10.5281/zenodo.15743011
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Macowan, M., Pattaroni, C., & Marsland, B. (2025). nf-mucimmuno/metagenomics (0.1.0). Zenodo. https://doi.org/10.5281/zenodo.15743010
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## Usage
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