build

#!/bin/sh

if [ $# -ge 1 ] ; then
  PROJECTS="$@";
else
  MASTERPROJECTS="CiftiLib-master utils znzlib NewNifti niftiio fslio giftiio miscmaths newimage libhfunc libvis first_lib \ 
meshclass fslvtkio misc_tcl basisfield warpfns bint shapeModel MVdisc fslvtkconv fslsurface libmeshutils newmesh \
DiscreteOpt FastPDlib MSMRegLib \
misc_c avwutils basil bet2 cluster dpm copain tissue fast4 feat5 film filmbabe flirt fabber baycest \
fslpres fslvbm mcflirt melodic miscvis mm nma gps \
randomise siena slicetimer susan tbss fnirt fugue asl_mfree \
ifit load_varian load_dicom misc_scripts fdt first possum sgeutils \
flameo oxford_asl relax qboot topup ptx2 lesions eddy dwssfp verbena MSM bianca mist-clean";
  PROJECTS="extras" #Extras is special project
  for project in ${MASTERPROJECTS}; do
      if [ -d src/${project} ]; then
	  PROJECTS="${PROJECTS} ${project} "
      fi
  done
  #Two loops to ensure all newSrc are built last
  for project in ${MASTERPROJECTS}; do
      if [ -d src/newSrc/${project} ]; then
	  PROJECTS="${PROJECTS} newSrc/${project} "
      fi
  done
fi

echo "Building projects - see build.log file for progress..."
./config/common/buildproj $PROJECTS > ./build.log 2>&1
finalStatus=$?
if [ $finalStatus -eq 0 ]; then
    echo "Build completed successfully.";
else
    echo "Build failed to build all projects.";
fi
exit $finalStatus