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Atlas Creation for Shape prior based methods #22

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msrepo opened this issue May 24, 2023 · 2 comments
Open

Atlas Creation for Shape prior based methods #22

msrepo opened this issue May 24, 2023 · 2 comments
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msrepo commented May 24, 2023

References

an additional small tutorial on warping annotations together with images

another tutorial on template (atlas) construction with VoxelMorph.
@msrepo msrepo self-assigned this May 24, 2023
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msrepo commented May 24, 2023 •
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Fix Errors:
image
replace with:
image
remove add_identity parameter to SpatialTransformer
image

results from an additional small tutorial on warping annotations together with images
image

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msrepo commented May 24, 2023 •
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Fix Errors when running the tutorial on template (atlas) construction with VoxelMorph:
use

np.float=float

Get this error even after setting output_all_intermediates=True
image
Fixed issue when running on colab:
install older version of tensorflow to fix this
image
Result of Atlas creation for MNIST dataset:
image
image

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