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Commit 5ada94e

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authoredMar 7, 2019
Bug fix
Fixed bug in GNU-Parallel command that extracts INFO data from imputed results
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‎3b_ConcatConvert.sh

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@@ -539,7 +539,7 @@ if [ "${AnalyzeINFO,,}" == "t" ]; then
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# GNU-Parallel Command: Takes all the chromosomal .gen files and analyzes them in parallel
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if [ "${GNU_ETA,,}" == "t" ]; then
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seq $INFOStart $INFOEnd | parallel --dryrun --eta GetInfo {} "&>" ./3_Impute/${BaseName}/ConcatImputation/${BaseName}_Chr{}.snpstatOut
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seq $INFOStart $INFOEnd | parallel --eta GetInfo {} "&>" ./3_Impute/${BaseName}/ConcatImputation/${BaseName}_Chr{}.snpstatOut
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elif [ "${GNU_ETA,,}" == "f" ]; then
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seq $INFOStart $INFOEnd | parallel GetInfo {} "&>" ./3_Impute/${BaseName}/ConcatImputation/${BaseName}_Chr{}.snpstatOut

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