.gitignore

# Profile files
profile/*.out
profile/profile

.DS_store

# Package files
pkg/python/*
pkg/include/*
pkg/lib/*
pkg/doc/*
build/

# Documentation
doc/latex/*
doc/html/*
doc/python/build

# Executables/ test files
tests/lowd
tests/highd
tests/hivpopulation
tests/recombination_lowd
tests/test_genealogy
tests/test.npz
tests/test.txt
tests/FFPopSim.py
tests/FFPopSim.pyc
tests/_FFPopSim.so

# SWIG generated files (they are kept in the static-gsl branch)
src/python/FFPopSim.py
src/python/FFPopSim_wrap.cpp

# Compiled Object files
*.slo
*.lo
*.o
*.h.gch

# Compiled Dynamic libraries
*.so

# Compiled Static libraries
*.lai
*.la
*.a

# Byte-compiled Python
*.pyc
*.pyo

# Packages
*.egg
*.egg-info
dist
eggs
parts
bin
var
sdist
develop-eggs
.installed.cfg
MANIFEST

# Installer logs
pip-log.txt

# Unit test / coverage reports
.coverage
.tox

# Translations
*.mo

# LaTeX stuff
doc/swig/*.acn
doc/swig/*.acr
doc/swig/*.alg
doc/swig/*.aux
doc/swig/*.bbl
doc/swig/*.blg
doc/swig/*.dvi
doc/swig/*.fls
doc/swig/*.fdb_latexmk
doc/swig/*.glg
doc/swig/*.glo
doc/swig/*.gls
doc/swig/*.idx
doc/swig/*.ilg
doc/swig/*.ind
doc/swig/*.ist
doc/swig/*.lof
doc/swig/*.log
doc/swig/*.lot
doc/swig/*.maf
doc/swig/*.mtc
doc/swig/*.mtc0
doc/swig/*.nav
doc/swig/*.nlo
doc/swig/*.out
doc/swig/*.pdfsync
doc/swig/*.ps
doc/swig/*.snm
doc/swig/*.synctex.gz
doc/swig/*.toc
doc/swig/*.vrb
doc/swig/*.xdy

# backup
*~

# Vim
.*.sw[a-z]
*.un~
Session.vim

# Eclipse
.pydevproject
Debug
Release

# Do not keep the binaries
# (they are kept in the static_gsl branch)


\.ipynb_checkpoints/

examples/tree_N=10000_r=0.0_L=1000_s=0.01.pdf

examples/tree_N=200_r=0.0_L=1000_U=0.1_s=-1e-06.pdf

examples/*.png

/\.cache