Merge branch 'main' into wgraham-base-rois

Author: willGraham01

.pre-commit-config.yaml

@@ -30,7 +30,7 @@ repos:
         - id: rst-directive-colons
         - id: rst-inline-touching-normal
     - repo: https://github.com/astral-sh/ruff-pre-commit
-      rev: v0.8.6
+      rev: v0.9.4
       hooks:
         - id: ruff
         - id: ruff-format
@@ -53,7 +53,7 @@ repos:
             additional_dependencies: [setuptools-scm, wheel]
     - repo: https://github.com/codespell-project/codespell
       # Configuration for codespell is in pyproject.toml
-      rev: v2.3.0
+      rev: v2.4.1
       hooks:
       - id: codespell
         additional_dependencies:

movement/kinematics.py

@@ -742,8 +742,7 @@ def compute_pairwise_distances(
         paired_elements = [
             (elem1, elem2)
             for elem1, elem2_list in pairs.items()
-            for elem2 in
-            (
+            for elem2 in (
                 # Ensure elem2_list is a list
                 [elem2_list] if isinstance(elem2_list, str) else elem2_list
             )

movement/validators/files.py

@@ -156,7 +156,7 @@ def _file_is_h5(self, attribute, value):
         except Exception as e:
             raise log_error(
                 ValueError,
-                f"File {value} does not seem to be in valid" "HDF5 format.",
+                f"File {value} does not seem to be in validHDF5 format.",
             ) from e
 
     @path.validator

tests/test_unit/test_kinematics.py

@@ -479,9 +479,9 @@ def test_nan_behavior_forward_vector(
     # Should have NaN values in the forward vector at time 1 and left_ear
     nan_values = forward_vector.sel(time=nan_time)
     assert nan_values.shape == (1, 2)
-    assert np.isnan(
-        nan_values
-    ).all(), "NaN values not returned where expected!"
+    assert np.isnan(nan_values).all(), (
+        "NaN values not returned where expected!"
+    )
     # Should have no NaN values in the forward vector in other positions
     assert not np.isnan(
         forward_vector.sel(

tests/test_unit/test_sample_data.py

@@ -55,15 +55,15 @@ def validate_metadata(metadata: dict[str, dict]) -> None:
         "note",
     ]
     check_yaml_msg = "Check the format of the metadata .yaml file."
-    assert isinstance(
-        metadata, dict
-    ), f"Expected metadata to be a dictionary. {check_yaml_msg}"
-    assert all(
-        isinstance(ds, str) for ds in metadata
-    ), f"Expected metadata keys to be strings. {check_yaml_msg}"
-    assert all(
-        isinstance(val, dict) for val in metadata.values()
-    ), f"Expected metadata values to be dicts. {check_yaml_msg}"
+    assert isinstance(metadata, dict), (
+        f"Expected metadata to be a dictionary. {check_yaml_msg}"
+    )
+    assert all(isinstance(ds, str) for ds in metadata), (
+        f"Expected metadata keys to be strings. {check_yaml_msg}"
+    )
+    assert all(isinstance(val, dict) for val in metadata.values()), (
+        f"Expected metadata values to be dicts. {check_yaml_msg}"
+    )
     assert all(
         set(val.keys()) == set(metadata_fields) for val in metadata.values()
     ), f"Found issues with the names of metadata fields. {check_yaml_msg}"