You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Is it possible to have a way to verify the conda environment is intact before launching the pipeline? There are times that the creation of the conda environments fail without (me) notice, the next time i launch, nextflow would assume the env is created and go along with the broken environments. If the env is used in the modules with error ignore, it would take ages for people to find out that failure of the error ignre step is due to conda
Use case
Make sure conda env is indeed correctly created
Suggested implementation
The text was updated successfully, but these errors were encountered:
@pditommaso I think it would be useful to extend the inspect command to also show the conda environment for each process, and even build every conda environment beforehand
Yeah, indeed. Irrespective of that it could done a minimal validation of conda directive content for example checking package name does not contain invalid char, trailing spaces, etc
New feature
Is it possible to have a way to verify the conda environment is intact before launching the pipeline? There are times that the creation of the conda environments fail without (me) notice, the next time i launch, nextflow would assume the env is created and go along with the broken environments. If the env is used in the modules with error ignore, it would take ages for people to find out that failure of the error ignre step is due to conda
Use case
Make sure conda env is indeed correctly created
Suggested implementation
The text was updated successfully, but these errors were encountered: