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Adding args to module in Part 8 #496

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JosuaCarl opened this issue Feb 10, 2025 · 1 comment
Open

Adding args to module in Part 8 #496

JosuaCarl opened this issue Feb 10, 2025 · 1 comment
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bug Something is wrong or not working nextflow run nf-core

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@JosuaCarl
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I think the following suggests the usage of the wrong scope:

Add this snippet to your `conf/modules.config` file (using the `params` scope) to call the `seqtk/trim` tool with the argument `-b 5` to trim 5 bp from the left end of each read:

The params scope can not be used with withName, like described.
If the block is added to the process scope, the code works well (as it should, like mentioned two paragraphs further up).

@vdauwera
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Thanks @JosuaCarl, we're going to refresh this material in the near future and will take your suggestion into account.

@vdauwera vdauwera added bug Something is wrong or not working nf-core nextflow run labels Feb 19, 2025
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Labels
bug Something is wrong or not working nextflow run nf-core
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