From 657df8a4b19ab946ec32e42e65d81771e56798e1 Mon Sep 17 00:00:00 2001
From: Jover <joverlee521@gmail.com>
Date: Thu, 7 Sep 2023 13:13:00 -0700
Subject: [PATCH] Add build dir for notify-on-job-start

ncov-ingest is the only repo where the ingest pipeline is in a
separate repository than the phylogenetic workflow. Therefore, the
build dir that should be sent with the onstart Slack message is the
current directory instead of the default "ingest" directory.
---
 Snakefile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Snakefile b/Snakefile
index d8e527ac..f7479877 100644
--- a/Snakefile
+++ b/Snakefile
@@ -92,7 +92,7 @@ onstart:
         print(f"\t${{{var}}}: " + ("YES" if os.environ.get(var, "") else "NO") + f"({description})")
     if send_notifications:
         message="🥗 GISAID ingest" if database=="gisaid" else "🥣 GenBank ingest"
-        shell(f"./vendored/notify-on-job-start \"{message}\" nextstrain/ncov-ingest")
+        shell(f"./vendored/notify-on-job-start \"{message}\" nextstrain/ncov-ingest '.'")
 
 onsuccess:
     message = "✅ This pipeline has successfully finished 🎉"