diff --git a/README.md b/README.md index 6c7b33e9..66aeb331 100644 --- a/README.md +++ b/README.md @@ -153,13 +153,8 @@ aws s3 cp - s3://nextstrain-data/files/ncov/open/nextclade_21L.tsv.zst.renew < / ## `vendored` -This repository uses [`git subrepo`](https://github.com/ingydotnet/git-subrepo) to manage copies of ingest scripts in `vendored`, from [nextstrain/ingest](https://github.com/nextstrain/ingest). To pull new changes from the central ingest repository, first install `git subrepo`, then run: +This repository uses [`git subrepo`](https://github.com/ingydotnet/git-subrepo) to manage copies of ingest scripts in [`vendored`](./vendored), from [nextstrain/ingest](https://github.com/nextstrain/ingest). To pull new changes from the central ingest repository, first install `git subrepo`, then run: -```sh -git subrepo pull vendored -``` - -Changes should not be pushed using `git subrepo push`. - -1. For pathogen-specific changes, make them in this repository via a pull request. -2. For pathogen-agnostic changes, make them on [nextstrain/ingest](https://github.com/nextstrain/ingest) via pull request there, then use `git subrepo pull` to add those changes to this repository. +See [vendored/README.md](vendored/README.md#vendoring) for instructions on how to update +the vendored scripts. Note that this repo is a special case and does not put vendored +scripts in an `ingest/` directory. Modify commands accordingly.