diff --git a/workflow/snakemake_rules/main_workflow.smk b/workflow/snakemake_rules/main_workflow.smk index 00affd890..c76d97219 100644 --- a/workflow/snakemake_rules/main_workflow.smk +++ b/workflow/snakemake_rules/main_workflow.smk @@ -469,7 +469,7 @@ rule build_align: sequences = rules.combine_samples.output.sequences, genemap = config["files"]["annotation"], reference = config["files"]["alignment_reference"], - nextclade_dataset = rules.prepare_nextclade.output.nextclade_dataset, + nextclade_dataset = "data/sars-cov-2-nextclade-defaults", output: alignment = "results/{build_name}/aligned.fasta", insertions = "results/{build_name}/insertions.tsv",