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Add samplesheet schema for our SDRF input #38

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jpfeuffer opened this issue May 3, 2022 · 0 comments
Open

Add samplesheet schema for our SDRF input #38

jpfeuffer opened this issue May 3, 2022 · 0 comments
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enhancement Improvement for existing functionality

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@jpfeuffer
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Description of feature

I think this is used for the nf-tower Datasets feature.
For now, I think it is a json schema like the input params (nextflow.config) but probably it would be nice to think about a PEP specification in the longterm for SDRF in general.

Example of the JSON schema in RNAseq pipeline: https://github.com/nf-core/rnaseq/blob/master/assets/schema_input.json
PEP specification: http://pep.databio.org/en/latest/

@jpfeuffer jpfeuffer added the enhancement Improvement for existing functionality label May 3, 2022
daichengxin referenced this issue in daichengxin/quantms Nov 5, 2023
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