From af23b3997aa91b9bc0ecbf4a163c022c73a92f57 Mon Sep 17 00:00:00 2001 From: Ani Date: Sat, 10 Aug 2024 17:42:37 +0200 Subject: [PATCH] Update creating_with_nf-core.md Looks like one needs to replace INPUT_CHECK.out.reads with ch_samplesheet to make the demo work? I have uploaded the created demo to showcase at https://github.com/animesh/nf-core-demo , hope it is correct! --- .../tutorials/nextflow_training/creating_with_nf-core.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/sites/docs/src/content/docs/tutorials/nextflow_training/creating_with_nf-core.md b/sites/docs/src/content/docs/tutorials/nextflow_training/creating_with_nf-core.md index a246e2cf35..e81a3b2235 100644 --- a/sites/docs/src/content/docs/tutorials/nextflow_training/creating_with_nf-core.md +++ b/sites/docs/src/content/docs/tutorials/nextflow_training/creating_with_nf-core.md @@ -368,7 +368,7 @@ Write some code to invoke the process above: // MODULE: Echo reads // ECHO_READS ( - INPUT_CHECK.out.reads + ch_samplesheet ) ``` @@ -380,7 +380,7 @@ and call it in the main `workflow` definition after `FASTQC`: // MODULE: Run FastQC // FASTQC ( - INPUT_CHECK.out.reads + ch_samplesheet ) ch_versions = ch_versions.mix(FASTQC.out.versions.first()) @@ -745,7 +745,7 @@ We now just need to call the `FASTP` process in the main `workflow`. Paste the s // MODULE: Run Fastp trimming // FASTP ( - INPUT_CHECK.out.reads, + ch_samplesheet, [], false, false