From 05c07c9f322dcc1443d1e04ece456359a19e71ab Mon Sep 17 00:00:00 2001
From: Nils Homer <nh13@users.noreply.github.com>
Date: Fri, 5 Feb 2021 17:23:17 -0800
Subject: [PATCH] Better error message for out of order contigs (#66)

---
 src/mut_txt.c | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/mut_txt.c b/src/mut_txt.c
index 5019563..b460944 100644
--- a/src/mut_txt.c
+++ b/src/mut_txt.c
@@ -58,7 +58,7 @@ muts_txt_t *muts_txt_init(FILE *fp, contigs_t *c)
           prev_pos = 0;
       }
       if(c->n == i) {
-          fprintf(stderr, "Error: contig not found [%s]\n", name);
+          fprintf(stderr, "Error: mutation contig not found or out of order [%s]\n", name);
           exit(1);
       }
       else if(pos <= 0 || c->contigs[i].len < pos) {