Fixed ffmpeg sourcing for the cluster

Author: nholschuh

find_nearest.py

@@ -31,6 +31,10 @@ def find_nearest(vector_2_search,value,how_many=1):
         vector_2_search = np.array(vector_2_search)
     if isinstance(value,list):
         value = np.array(value)
+
+    ############### Here, we substitute out NaNs so they are never chosen
+    if np.max(np.isnan(vector_2_search) == 1):
+        vector_2_search[np.isnan(vector_2_search)] = np.inf
 
     comp_vec = vector_2_search
 

find_pixelcoords.py

@@ -1,4 +1,10 @@
 import matplotlib.animation as manimation
+import os
+
+if os.path.isdir('/home/common/HolschuhLab/Code/'):
+    import matplotlib.pyplot as plt
+    plt.rcParams['animation.ffmpeg_path']='/home/common/HolschuhLab/Code/HolschuhLab_CondaEnv/bin/ffmpeg'
+    
 
 def generate_animation(fps,title='Matplotlib Animation',comment='Matplotlib Animation'):
     """