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override matched provided entities with baseline spec query
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fmriprep/utils/bids.py

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@@ -62,7 +62,7 @@ def collect_derivatives(
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# search for both boldrefs
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for k, q in spec['baseline'].items():
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query = {**q, **entities}
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query = {**entities, **q}
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item = layout.get(return_type='filename', **query)
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if not item:
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continue

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