chore: Bump dependency pins

Author: effigies

env.yml

@@ -13,35 +13,31 @@ dependencies:
   # git-annex for templateflow users with DataLad superdatasets
   - git-annex=*=alldep*
   # Base scientific python stack; required by FSL, so pinned here
-  - numpy=1.26
+  - numpy=2.2
   - scipy=1.15
-  - matplotlib=3.9
+  - matplotlib=3.10
   - pandas=2.2
   - h5py=3.13
   # Dependencies compiled against numpy, best to stick with conda
   - nitime=0.11
   - scikit-image=0.25
   - scikit-learn=1.6
   # Utilities
-  - graphviz=11.0
-  - pandoc=3.6
+  - graphviz=12.2
+  - pandoc=3.7
   # Workflow dependencies: ANTs
-  - ants=2.5
-  # 5.4.1 and 5.4.2 cause segfaults with ants
-  # Try to remove this ASAP
-  # https://github.com/conda-forge/ants-feedstock/issues/19
-  - libitk=5.4.0
+  - ants=2.6
   # Workflow dependencies: Convert3d
   - convert3d=1.4
   # Workflow dependencies: Connectome Workbench
   - connectome-workbench-cli=2.0
-  # Workflow dependencies: FSL (versions pinned in 6.0.7.13)
+  # Workflow dependencies: FSL (versions pinned in 6.0.7.17.20250415.fe1c582e)
   - fsl-bet2=2111.8
-  - fsl-flirt=2111.2
+  - fsl-flirt=2111.4
   - fsl-fast4=2111.3
   - fsl-fugue=2201.5
   - fsl-mcflirt=2111.0
-  - fsl-miscmaths=2203.2
+  - fsl-miscmaths=2412.4
   - fsl-topup=2203.5
   - pip
   - pip: