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lines changed Original file line number Diff line number Diff line change @@ -297,7 +297,8 @@ ICA-AROMA can be enabled with the flag ``--use-aroma``.
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do not include ICA-AROMA confounds during your design specification or denoising procedure.
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**CompCor confounds **.
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- :abbr: `CompCor ( Component Based Noise Correction ) ` is a component-based noise correlation method.
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+ :abbr: `CompCor ( Component Based Noise Correction ) ` is a :abbr: `PCA ( principal component analysis ) `,
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+ hence component-based, noise pattern recognition method.
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In the method, principal components are calculated within an :abbr: `ROI ( Region of Interest ) `
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that is unlikely to include signal related to neuronal activity, such as :abbr: `CSF ( cerebro-spinal fluid ) `
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and :abbr: `WM ( white matter ) ` masks.
@@ -321,6 +322,10 @@ from the union of these.
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[Muschelli2014 ]_ can be applied using
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the :abbr: `WM ( white matter ) ` and :abbr: `CSF ( cerebro-spinal fluid ) ` masks. To determine the provenance
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of each component, consult the metadata file (see below).
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+ Make sure you check on `this didactic discussion on NeuroStars.org
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+ <https://neurostars.org/t/fmrirep-outputs-very-high-number-of-acompcors-up-to-1000/5451> `__
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+ where Patrick Sadil gets into details about PCA and how that base technique applies
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+ to CompCor in general and *fMRIPrep *'s implementation in particular.
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Each confounds data file will also have a corresponding metadata file
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(``~desc-confounds_regressors.json ``).
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