rel(20.2.0rc0): Update CHANGES [skip ci]

Author: oesteban

.maint/paper_author_list.py

@@ -40,7 +40,7 @@ def _aslist(inlist):
           "files: %s." % ', '.join(unmatched), file=sys.stderr)
 
     print('Authors (%d):' % len(author_matches))
-    print('; '.join([
+    print("%s." % '; '.join([
         '%s \\ :sup:`%s`\\ ' % (i['name'], idx)
         for i, idx in zip(author_matches, aff_indexes)
     ]))

CHANGES.rst

@@ -1,3 +1,108 @@
+20.2.0 (TBD)
+============
+With this third minor release series of 2020,
+the first *fMRIPrep LTS* (*long-term support*) is finally here!
+
+This release contains a number of bug-fixes and enhancements mostly
+related to easing the maintenance, anticipating patch-release breaking
+changes to ensure a longstanding LTS, and addressing some run-to-run
+repeatability problems of the CompCor implementation.
+
+.. admonition:: Long-Term Support (LTS)
+
+    *fMRIPrep* 20.2 LTS introduces the `long-term support program
+    <https://www.nipreps.org/devs/releases/#long-term-support-series>`__.
+    This LTS version will be kindly steered and maintained by
+    the group of Dr. Basile Pinsard and Prof. Pierre Bellec at
+    `CRIUGM <http://www.criugm.qc.ca/>`__, (Université de Montréal).
+    The LTS is planned for a window of 4 years of support (i.e., until
+    September 2024).
+
+.. caution::
+
+    As with all minor version increments, working directories
+    from previous versions **should not be reused**.
+
+Thank you for using *fMRIPrep*!
+If you encounter any issues with this release, please let us know
+by posting an issue on our GitHub page!
+
+A full list of changes can be found below.
+
+* FIX: Revise the reproducibility of CompCor masks (#2130)
+* FIX: Simplify transform aggregation in resampling, pass identity transforms for multi-echo cases (#2239)
+* FIX: Skip the T1w check if ``--anat-derivatives`` is provided. (#2201)
+* FIX: Storing ``--bids-filters`` within config file (#2177)
+* FIX: Revise multi-echo reference generation, permitting using SBRefs too (#1803)
+* FIX: FreeSurfer license manipulation & canary
+* ENH: Output CompCor masks if ``--debug compcor`` is passed (#2248)
+* ENH: Conform to BIDS Derivatives as of BIDS 1.4.0 (#2223)
+* ENH: Reuse config (#2240)
+* ENH: Save BOLD-anatomical transforms to derivatives folder (#2233)
+* ENH: Leverage BIDSLayout's ``database_path`` (#2203)
+* ENH: Add ``--no-tty`` option to ``fmriprep-docker.py`` (#2204)
+* ENH: Report number of echoes in BOLD summary. (#2184)
+* ENH: Ensure NiPype telemetry is just pinged once (#2168)
+* DOC: Update reference in "Refinement of Brain Mask" description (#2215)
+* DOC: List *TemplateFlow* templates that need to be prefetched (#2196)
+* DOC: Update references to https://github.com/nipreps (#2191)
+* DOC: Pin NiPype with new Sphinx extension syntax (#2092)
+* MAINT: Track #2252 from 20.1.x series (#2253)
+* MAINT: Silence PyBIDS warning by setting extension mode (#2250)
+* MAINT: Drop CircleCI docs build (#2247)
+* MAINT: Pin latest *NiPreps* (#2244)
+* MAINT: Update ``setup.cfg`` (flake8 and pytest) (#2183)
+* MAINT: Delete release-drafter (#2169)
+* MAINT: Track bug-fix release on the 20.1.x series (#2165)
+* MAINT: Remove auto-comment bot (#2166)
+* MAINT: Improve the questions on the bug-report template (#2158)
+
+.. admonition:: Author list for papers based on *fMRIPrep* 20.2 LTS series
+
+    As described in the `Contributor Guidelines
+    <https://www.nipreps.org/community/CONTRIBUTING/#recognizing-contributions>`__,
+    anyone listed as developer or contributor may write and submit manuscripts
+    about *fMRIPrep*.
+    To do so, please move the author(s) name(s) to the front of the following list:
+
+    Markiewicz, Christopher J. \ :sup:`1`\ ; Goncalves, Mathias \ :sup:`1`\ ; DuPre, Elizabeth \ :sup:`2`\ ; Kent, James D. \ :sup:`3`\ ; Salo, Taylor \ :sup:`4`\ ; Ciric, Rastko \ :sup:`1`\ ; Pinsard, Basile \ :sup:`5`\ ; Finc, Karolina \ :sup:`6`\ ; de la Vega, Alejandro \ :sup:`7`\ ; Feingold, Franklin \ :sup:`1`\ ; Tooley, Ursula A. \ :sup:`8`\ ; Benson, Noah C. \ :sup:`9`\ ; Urchs, Sebastian \ :sup:`2`\ ; Blair, Ross W. \ :sup:`1`\ ; Erramuzpe, Asier \ :sup:`10`\ ; Lurie, Daniel J. \ :sup:`11`\ ; Heinsfeld, Anibal S. \ :sup:`12`\ ; Jacoby, Nir \ :sup:`13`\ ; Jamison, Keith W. \ :sup:`14`\ ; Frederick, Blaise B. \ :sup:`15, 16`\ ; Valabregue, Romain \ :sup:`17`\ ; Sneve, Markus H. \ :sup:`18`\ ; Liem, Franz \ :sup:`19`\ ; Adebimpe, Azeez \ :sup:`20`\ ; Velasco, Pablo \ :sup:`21`\ ; Wexler, Joseph B. \ :sup:`1`\ ; Groen, Iris I. A. \ :sup:`22`\ ; Ma, Feilong \ :sup:`23`\ ; Amlien, Inge K. \ :sup:`18`\ ; Bellec, Pierre \ :sup:`5`\ ; Cieslak, Matthew \ :sup:`20`\ ; Devenyi, Grabriel A. \ :sup:`24`\ ; Ghosh, Satrajit S. \ :sup:`25, 26`\ ; Gomez, Daniel E. P. \ :sup:`27`\ ; Halchenko, Yaroslav O. \ :sup:`23`\ ; Isik, Ayse Ilkay \ :sup:`28`\ ; Moodie, Craig A. \ :sup:`1`\ ; Naveau, Mikaël \ :sup:`29`\ ; Rivera-Dompenciel, Adriana \ :sup:`3`\ ; Satterthwaite, Theodore D. \ :sup:`20`\ ; Sitek, Kevin R. \ :sup:`30`\ ; Stojić, Hrvoje \ :sup:`31`\ ; Thompson, William H. \ :sup:`1`\ ; Wright, Jessey \ :sup:`1`\ ; Ye, Zhifang \ :sup:`32`\ ; Gorgolewski, Krzysztof J. \ :sup:`1`\ ; Poldrack, Russell A. \ :sup:`1`\ ; Esteban, Oscar \ :sup:`33`\ .
+
+    Affiliations:
+
+      1. Department of Psychology, Stanford University
+      2. Montreal Neurological Institute, McGill University
+      3. Neuroscience Program, University of Iowa
+      4. Department of Psychology, Florida International University
+      5. SIMEXP Lab, CRIUGM, University of Montréal, Montréal, Canada
+      6. Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń
+      7. University of Texas at Austin
+      8. Department of Neuroscience, University of Pennsylvania, PA, USA
+      9. Department of Psychology, New York University
+      10. Computational Neuroimaging Lab, BioCruces Health Research Institute
+      11. Department of Psychology, University of California, Berkeley
+      12. Child Mind Institute
+      13. Department of Psychology, Columbia University
+      14. Department of Radiology, Weill Cornell Medicine
+      15. McLean Hospital Brain Imaging Center, MA, USA
+      16. Consolidated Department of Psychiatry, Harvard Medical School, MA, USA
+      17. CENIR, INSERM U1127, CNRS UMR 7225, UPMC Univ Paris 06 UMR S 1127, Institut du Cerveau et de la Moelle épinière, ICM, F-75013, Paris, France
+      18. Center for Lifespan Changes in Brain and Cognition, University of Oslo
+      19. URPP Dynamics of Healthy Aging, University of Zurich
+      20. Perelman School of Medicine, University of Pennsylvania, PA, USA
+      21. Center for Brain Imaging, New York University
+      22. Department of Psychology, New York University, NY, USA
+      23. Dartmouth College: Hanover, NH, United States
+      24. Department of Psychiatry, McGill University
+      25. McGovern Institute for Brain Research, MIT, MA, USA
+      26. Department of Otolaryngology, Harvard Medical School, MA, USA
+      27. Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen
+      28. Max Planck Institute for Empirical Aesthetics
+      29. Cyceron, UMS 3408 (CNRS - UCBN), France
+      30. Speech & Hearing Bioscience & Technology Program, Harvard University
+      31. Max Planck UCL Centre for Computational Psychiatry and Ageing Research, University College London
+      32. State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University
+      33. Department of Radiology, CHUV, Université de Lausanne
+
 20.1.2 (September 04, 2020)
 ===========================
 Bug-fix release in the 20.1.x series.