1.0.9

Release notes

Hotfix to a problem identified in the "PEPOLAR" susceptibility distortion correction path.

With thanks to @danlurie for contributions.

CHANGES

• [MAINT] Update pinning of niworkflows, nibabel, indexed_gzip and pybids.
• [FIX] Connect inputnode to SDC for pepolar images (#1046)
• [FIX] Pass ref_file to STC check (#1038)
• [DOC] Add BBR fallback to user docs. (#1036)
• [ENH] Revise resampling grid for template outputs (#1040)
• [MAINT] DataSinks within their workflows (#1021)
• [ENH] Add FLAIR pial refinement support (#829)
• [MAINT] Upgrade to pybids 0.5 (#1027)
• [MAINT] Refactor fieldmap heuristics (#1017)
• [FIX] Use metadata to select shortest echo as ref_file (#1018)
• [ENH] Adopt versioneer to compose version names (#1007)
• [ENH] Handle first echo separately for ME-EPI (#891)

1.0.8

Release notes

Minor bugfixes, niworkflows pinned to latest version 0.3.4.

CHANGES

With thanks to @mgxd and @naveau for contributions.

• [FIX] ROIs Plot and output brain masks consistency (#1002)
• [FIX] Init flirt with qform (#1003)
• [DOC] Prepopulate tag when posting neurostars questions. (#987)
• [FIX] Update fmap.py : import _get_pe_index in get_ees (#984)
• [FIX] Argparse action (#985)

1.0.7

Release notes

A release with several hotfixes, and the new feature of mapping FreeSurfer's aseg and aparc+aseg into subject space.

CHANGES

• [ENH] Output aseg and aparc in T1w space (#957)
• [FIX] Write latest BOLD mask out (space-T1w) (#978)
• [PIN] Updating niworkflows to 0.3.1 (#962)
• [FIX] Robuster BOLD mask (#966)

1.0.6-2

Testing deployment from CircleCI

1.0.6-1

Release to check new CircleCI deployment.

1.0.6

Release notes

This release addresses the major issues arisen from finishing Testing Phase 2 (see https://github.com/poldracklab/fmriprep/milestone/19) in combination with the very recent Nipype 1.0.0 release.

CHANGES

• [FIX] Bad connection in phasediff-fieldmap workflow (#950)
• [PIN] niworkflows-0.3.1-dev (including Nipype 1.0.0!)
• [ENH] Migrate to CircleCI 2.0 and workflows (#943)
• [ENH] Improvements to CLIs (native & wrapper) (#944)
• [FIX] Rerun tCompCor interface in case of MemoryError (#942)

1.0.5

CHANGES

• [PIN] niworkflows-0.2.8 to fix several execution issues.
• [ENH] Code cleanup (#938)

1.0.4

Release notes

This release fixes minor issues found during Testing Phase 2, and gives a solution to some execution errors derived from Nipype latest changes.

CHANGES

• [FIX] Pin niworkflows-0.2.6 to fix several MultiProc errors (nipy/nipype#2368)
• [DOC] Fix DOI in citation boilerplate (#933), w.t.t. @jdkent
• [FIX] Heuristics to prevent memory errors during aCompCor (#930).
• [FIX] RuntimeWarning: divide by zero encountered in float_scalars (#931).
• [FIX] INU correction before merging several T1w (#925).

1.0.3

Release notes

Hotfix for regression of #868 and #914.

CHANGES

• [FIX] Pin niworkflows-0.2.4 to fix #868.
• [FIX] Roll back run/task groupings after BIDS query (#918).
  Groupings for the multi-echo extension will be reenabled soon.

1.0.2

CHANGES

• [FIX] Grouping runs broke FMRIPREP on some datasets (#916)
  Thanks to @emdupre for fixing this.