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FIX: Set volume all file
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nibabies/workflows/bold/alignment.py

Lines changed: 5 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -145,7 +145,7 @@ def gen_subcortical_alignment_wf(repetition_time, name='subcortical_alignment_wf
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name="smooth"
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)
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separate = pe.MapNode(
148-
CiftiSeparate(direction="COLUMN", volume_all=True),
148+
CiftiSeparate(direction="COLUMN", volume_all_file='volume_all.nii.gz'),
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iterfield=["in_file"],
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name="separate"
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)
@@ -163,7 +163,10 @@ def gen_subcortical_alignment_wf(repetition_time, name='subcortical_alignment_wf
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name='fmt_agg_rois',
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)
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agg_rois = pe.MapNode(fsl.MultiImageMaths(), name='agg_rois')
166-
final_vol = pe.Node(CiftiSeparate(direction="COLUMN", volume_all=True), name="final_vol")
166+
final_vol = pe.Node(
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CiftiSeparate(direction="COLUMN", volume_all_file='volume_all.nii.gz'),
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name="final_vol"
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)
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workflow = Workflow(name=name)
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# fmt: off

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