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syn-sdc largely suboptimal results #85

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dorianps opened this issue Feb 3, 2020 · 0 comments · Fixed by #239
Closed

syn-sdc largely suboptimal results #85

dorianps opened this issue Feb 3, 2020 · 0 comments · Fixed by #239
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bug Something isn't working effort: medium Estimated medium effort task impact: medium Estimated medium impact task T1w-SyN
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@dorianps
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dorianps commented Feb 3, 2020

I mentioned in Neurostars that the syn-sdc we get are not good. As suggested (I think by @effigies) I am posting a couple of examples here for your review.

Please note that my area of research focuses on basal ganglia (caudate and putamen more), so we focus a lot on the ventricles going into place after the correction.

These are cases where we have fieldmaps and compare fmb-sdc with syn-sdc figures. Since SVG files cannot be uploaded in github, I have added some screen recordings in the attached powerpoint file.

Syn-SDC_subptimal.pptx

We don't have a lot cases without fieldmaps, but looks like those without fieldmaps are a lost case, particularly from Philips scanners.

@effigies effigies transferred this issue from nipreps/fmriprep Feb 3, 2020
@oesteban oesteban added this to the 1.5.0 milestone Nov 18, 2020
@oesteban oesteban added bug Something isn't working impact: medium Estimated medium impact task effort: medium Estimated medium effort task labels Nov 27, 2020
@oesteban oesteban modified the milestones: 2.1.0, 2.0.8 Oct 1, 2021
@oesteban oesteban linked a pull request Oct 1, 2021 that will close this issue
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