diff --git a/CHANGES.rst b/CHANGES.rst index 1961dfb266..6d1fa38462 100644 --- a/CHANGES.rst +++ b/CHANGES.rst @@ -1,3 +1,19 @@ +0.13.2 (December 08, 2023) +========================== +Bug fix release in the 0.13.x series. + +This release fixes a check for skull-stripping in auto mode, and adds +missing fsLR atlases to the Python package resources. +The Docker image has also been updated to ensure FreeSurfer can be run +from the sMRIPrep container. + +With thanks to Patrick Sadil for reports and fixes. + +* ENH: Add 59k atlases (#405) +* FIX: Repair FreeSurfer dependency in Dockerfile (tcsh) (#404) +* FIX: Invert result of skull-strip check in auto mode (#402) + + 0.13.1 (November 21, 2023) ========================== Bug fix release in the 0.13.x series. diff --git a/smriprep/data/atlases/L.atlasroi.59k_fs_LR.shape.gii b/smriprep/data/atlases/L.atlasroi.59k_fs_LR.shape.gii new file mode 100644 index 0000000000..6837cfad9c --- /dev/null +++ b/smriprep/data/atlases/L.atlasroi.59k_fs_LR.shape.gii @@ -0,0 +1,85 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + MODE_AUTO_SCALE_PERCENTAGE + 98.000000 2.000000 2.000000 98.000000 + -100.000000 0.000000 0.000000 100.000000 + ROY-BIG-BL + true + true + false + true + THRESHOLD_TEST_SHOW_OUTSIDE + THRESHOLD_TYPE_OFF + false + -1.000000 1.000000 + -1.000000 1.000000 + -1.000000 1.000000 + + PALETTE_THRESHOLD_RANGE_MODE_MAP + false + +]]> + + + eJzt2tFu2zAMBVD/WX8tnz7sYcBaxE1iSyJFnocDFBhg3kt1XazuOB5fx6njcf5n7/r7jM7u7q+b6POqfO7RO4lmT/ZkR3n2E53RbnKxEzu5s4/obHaRaw/Ruewgtn90Jmevt8766tqvZ/WOlftV/VxdsVe1TpXe91912aVPhw7Zu7ybP2OH6rkz5d8t86d5IzPvkvVKztVZr2ZclTNzvqzZ7uSalS1bprt5RuYaleVungw5Rma4kiNy/ujZ786PmDtj5m+zZ877OXPVrNlzAGAno98VVv7bDgAAkE3nd6Gu74Qde5/dAVTt3+n+o8udT4d7rur3eZX7Vb2TrXjfXO0evVKfUV2iO1XoMbrD6h475981+465Z2SemXunvLtk3SHnrIyjcmbOlzVbxlzZMs3M82kmOfKcS+T8qNnVZj6bW3HWijmzZ+z4bCCnO5+bAQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAIB+jsc4P595Ncu/r0fnG9ENAKATn4W+76H7LuzBDv7fQXQOZ6+3zvrq+rprdA4d9evUrWKvap0q9onOoMf+HXb+e7F79ugMlXe9Y97oDFV2mj1j5nyZswEAwKdGfL599oyz3zP5P8oAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAADDf8fguOk9E97NdPBOdefb5XxXdI9s+Kuxk5C523smMPey2i+470L1fd53rd+70vT3zZ3im3rN6Zjrf2R2je67o96rrrB2s7rbqrKM7zOgXnfvdbu92jM468tyis404MwAAgBGi7lGqzlt577b7jJnPn/Vs7+SQU+TvIqjD95Y92ZH9RLMbe7GTcTuJzmMX8ezBDjr379q9Y+/unaOz6Dq+a3QOHe93jM6gGwAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAOzuD/R09gI= + + diff --git a/smriprep/data/atlases/R.atlasroi.59k_fs_LR.shape.gii b/smriprep/data/atlases/R.atlasroi.59k_fs_LR.shape.gii new file mode 100644 index 0000000000..7594459fe7 --- /dev/null +++ b/smriprep/data/atlases/R.atlasroi.59k_fs_LR.shape.gii @@ -0,0 +1,85 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + MODE_AUTO_SCALE_PERCENTAGE + 98.000000 2.000000 2.000000 98.000000 + -100.000000 0.000000 0.000000 100.000000 + ROY-BIG-BL + true + true + false + true + THRESHOLD_TEST_SHOW_OUTSIDE + THRESHOLD_TYPE_OFF + false + -1.000000 1.000000 + -1.000000 1.000000 + -1.000000 1.000000 + + PALETTE_THRESHOLD_RANGE_MODE_MAP + false + +]]> + + + 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 + +