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Map fsLR template to fsnative/T1w space #59

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Closed
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oesteban opened this issue Mar 12, 2019 · 1 comment
Closed
1 of 3 tasks

Map fsLR template to fsnative/T1w space #59

oesteban opened this issue Mar 12, 2019 · 1 comment
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effort:medium Estimated medium effort task impact:medium Estimated medium impact task

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@oesteban
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oesteban commented Mar 12, 2019

In pursuing nipreps/fmriprep#1025, this would be the fastest route to avoid the overhead of an extra surface registration step with MSM. After all, users in need of a more precise registration should be using ciftify anyways.

To do this, I think this would be the workflow:

  • Make sure we have all we need from templateflow (Ensure all necessary files are available under fsaverage and fsLR templateflow/templateflow#13)
  • Back-project tpl-fsLR_space-fsaverage_hemi-{L,R}_den-32k_sphere.surf.gii to fsnative.
  • Back-project tpl-fsLR_res-01_desc-aseg_dseg.nii.gz to T1w space.
  • Project sub-NNN_space-T1w_desc-fsLRatlas_dseg.nii.gz to BOLD run space (this would happen on fmriprep proper)
  • Sample via mris_vol2surf, as we are currently doing for GIfTI outputs (this would happen on fmriprep proper).

@edickie does this make sense?
@mgxd still interested on working this out or we should get this off your plate?
@effigies, any conceptual concerns about this?

@oesteban oesteban added effort:medium Estimated medium effort task impact:medium Estimated medium impact task labels Mar 12, 2019
@oesteban oesteban changed the title Map fsLR template to fsnative space Map fsLR template to fsnative/T1w space Mar 12, 2019
@oesteban
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i don't think this is an issue anymore (see nipreps/fmriprep#1887 & nipreps/niworkflows#417)

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