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1 | 1 | .. -*- rest -*-
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2 | 2 | .. vim:syntax=rst
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3 | 3 |
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4 |
| -.. Following contents should be copied from LONG_DESCRIPTION in nibabel/info.py |
5 |
| -
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6 | 4 | .. image:: doc/pics/logo.png
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7 | 5 | :target: https://nipy.org/nibabel
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8 | 6 | :alt: NiBabel logo
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9 | 7 |
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10 |
| -Read and write access to common neuroimaging file formats, including: ANALYZE_ (plain, SPM99, SPM2 and later), |
11 |
| -GIFTI_, NIfTI1_, NIfTI2_, `CIFTI-2`_, MINC1_, MINC2_, `AFNI BRIK/HEAD`_, ECAT_ and Philips PAR/REC. |
12 |
| -In addition, NiBabel also supports FreeSurfer_'s MGH_, geometry, annotation and morphometry files, |
13 |
| -and provides some limited support for DICOM_. |
14 |
| - |
15 |
| -NiBabel's API gives full or selective access to header information (metadata), and image |
16 |
| -data is made available via NumPy arrays. For more information, see NiBabel's `documentation site`_ |
17 |
| -and `API reference`_. |
18 |
| - |
19 |
| -.. _API reference: https://nipy.org/nibabel/api.html |
20 |
| -.. _AFNI BRIK/HEAD: https://afni.nimh.nih.gov/pub/dist/src/README.attributes |
21 |
| -.. _ANALYZE: http://www.grahamwideman.com/gw/brain/analyze/formatdoc.htm |
22 |
| -.. _CIFTI-2: https://www.nitrc.org/projects/cifti/ |
23 |
| -.. _DICOM: http://medical.nema.org/ |
24 |
| -.. _documentation site: http://nipy.org/nibabel |
25 |
| -.. _ECAT: http://xmedcon.sourceforge.net/Docs/Ecat |
26 |
| -.. _Freesurfer: https://surfer.nmr.mgh.harvard.edu |
27 |
| -.. _GIFTI: https://www.nitrc.org/projects/gifti |
28 |
| -.. _MGH: https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MghFormat |
29 |
| -.. _MINC1: |
30 |
| - https://en.wikibooks.org/wiki/MINC/Reference/MINC1_File_Format_Reference |
31 |
| -.. _MINC2: |
32 |
| - https://en.wikibooks.org/wiki/MINC/Reference/MINC2.0_File_Format_Reference |
33 |
| -.. _NIfTI1: http://nifti.nimh.nih.gov/nifti-1/ |
34 |
| -.. _NIfTI2: http://nifti.nimh.nih.gov/nifti-2/ |
35 |
| - |
36 | 8 | .. list-table::
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37 | 9 | :widths: 20 80
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38 | 10 | :header-rows: 0
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@@ -97,6 +69,35 @@ and `API reference`_.
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97 | 69 | :target: https://doi.org/10.5281/zenodo.591597
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98 | 70 | :alt: Zenodo DOI
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99 | 71 |
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| 72 | +.. Following contents should be copied from LONG_DESCRIPTION in nibabel/info.py |
| 73 | +
|
| 74 | +
|
| 75 | +Read and write access to common neuroimaging file formats, including: ANALYZE_ (plain, SPM99, SPM2 and later), |
| 76 | +GIFTI_, NIfTI1_, NIfTI2_, `CIFTI-2`_, MINC1_, MINC2_, `AFNI BRIK/HEAD`_, ECAT_ and Philips PAR/REC. |
| 77 | +In addition, NiBabel also supports FreeSurfer_'s MGH_, geometry, annotation and morphometry files, |
| 78 | +and provides some limited support for DICOM_. |
| 79 | + |
| 80 | +NiBabel's API gives full or selective access to header information (metadata), and image |
| 81 | +data is made available via NumPy arrays. For more information, see NiBabel's `documentation site`_ |
| 82 | +and `API reference`_. |
| 83 | + |
| 84 | +.. _API reference: https://nipy.org/nibabel/api.html |
| 85 | +.. _AFNI BRIK/HEAD: https://afni.nimh.nih.gov/pub/dist/src/README.attributes |
| 86 | +.. _ANALYZE: http://www.grahamwideman.com/gw/brain/analyze/formatdoc.htm |
| 87 | +.. _CIFTI-2: https://www.nitrc.org/projects/cifti/ |
| 88 | +.. _DICOM: http://medical.nema.org/ |
| 89 | +.. _documentation site: http://nipy.org/nibabel |
| 90 | +.. _ECAT: http://xmedcon.sourceforge.net/Docs/Ecat |
| 91 | +.. _Freesurfer: https://surfer.nmr.mgh.harvard.edu |
| 92 | +.. _GIFTI: https://www.nitrc.org/projects/gifti |
| 93 | +.. _MGH: https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MghFormat |
| 94 | +.. _MINC1: |
| 95 | + https://en.wikibooks.org/wiki/MINC/Reference/MINC1_File_Format_Reference |
| 96 | +.. _MINC2: |
| 97 | + https://en.wikibooks.org/wiki/MINC/Reference/MINC2.0_File_Format_Reference |
| 98 | +.. _NIfTI1: http://nifti.nimh.nih.gov/nifti-1/ |
| 99 | +.. _NIfTI2: http://nifti.nimh.nih.gov/nifti-2/ |
| 100 | + |
100 | 101 | Installation
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101 | 102 | ============
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102 | 103 |
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@@ -128,13 +129,13 @@ Please send any questions or suggestions to the `neuroimaging mailing list
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128 | 129 | License
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129 | 130 | =======
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130 | 131 |
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131 |
| -NiBabel is licensed under the terms of the `MIT license`_. Some code included |
132 |
| -with NiBabel is licensed under the `BSD license`_. For more information, |
133 |
| -please see the COPYING_ file. |
| 132 | +NiBabel is licensed under the terms of the `MIT license |
| 133 | +<https://github.com/nipy/nibabel/blob/master/COPYING#nibabel>`__. |
| 134 | +Some code included with NiBabel is licensed under the `BSD license`_. |
| 135 | +For more information, please see the COPYING_ file. |
134 | 136 |
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135 | 137 | .. _BSD license: https://opensource.org/licenses/BSD-3-Clause
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136 | 138 | .. _COPYING: https://github.com/nipy/nibabel/blob/master/COPYING
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137 |
| -.. _MIT license: https://github.com/nipy/nibabel/blob/master/COPYING#nibabel |
138 | 139 |
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139 | 140 | Citation
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140 | 141 | ========
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