From 610ad5dd7fd5af92cbef6f558ebd79ce883b7c05 Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Fri, 15 Mar 2019 12:05:23 -0400 Subject: [PATCH 1/7] DOC: Changelog skeleton --- Changelog | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) diff --git a/Changelog b/Changelog index d32936cfd0..4075c043c5 100644 --- a/Changelog +++ b/Changelog @@ -24,6 +24,24 @@ Gerhard (SG), Eric Larson (EL), Yaroslav Halchenko (YOH) and Chris Cheng (CC). References like "pr/298" refer to github pull request numbers. +2.4.0 (Monday 25 March 2019) +============================ + +New features +------------ + +Enhancements +------------ + +Bug fixes +--------- + +Maintenance +----------- + +API changes and deprecations +---------------------------- + 2.3.3 (Wednesday 16 January 2019) ================================= From 61345daef6f101c9f9bdd977b6394d8271692c01 Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Fri, 15 Mar 2019 12:11:19 -0400 Subject: [PATCH 2/7] MNT/DOC: Update mailmap, zenodo, author list --- .mailmap | 4 ++-- .zenodo.json | 14 ++++++++------ doc/source/index.rst | 1 + 3 files changed, 11 insertions(+), 8 deletions(-) diff --git a/.mailmap b/.mailmap index d917d4d279..00f7e70e83 100644 --- a/.mailmap +++ b/.mailmap @@ -43,13 +43,13 @@ Marc-Alexandre Côté Marc-Alexandre Cote mathiasg Michael Hanke Michael Hanke -Nguyen, Ly lxn2 +Ly Nguyen lxn2 Oliver P. Hinds ohinds Paul McCarthy Paul McCarthy Satrajit Ghosh Satrajit Ghosh Serge Koudoro skoudoro Stephan Gerhard Stephan Gerhard Thomas Roos Roosted7 -Venky Reddy R3DDY97 +Venkateswara Reddy Reddam R3DDY97 Yaroslav O. Halchenko Yaroslav O. Halchenko Yaroslav Halchenko diff --git a/.zenodo.json b/.zenodo.json index 79f1e2081b..525f64c8df 100644 --- a/.zenodo.json +++ b/.zenodo.json @@ -178,6 +178,11 @@ "name": "Kaczmarzyk, Jakub", "orcid": "0000-0002-5544-7577" }, + { + "affiliation": "Universit\u00e9 de Sherbrooke", + "name": "Legarreta, Jon Haitz", + "orcid": "0000-0002-9661-1396" + }, { "name": "Hahn, Kevin S." }, @@ -192,11 +197,6 @@ "name": "Poline, Jean-Baptiste", "orcid": "0000-0002-9794-749X" }, - { - "affiliation": "Universit\u00e9 de Sherbrooke", - "name": "Legarreta, Jon Haitz", - "orcid": "0000-0002-9661-1396" - }, { "affiliation": "University College London, London, UK", "name": "Stutters, Jon", @@ -265,7 +265,9 @@ "name": "Roos, Thomas" }, { - "name": "Reddy, Venky" + "affiliation": "National Institute of Mental Health and Neuro-Sciences, India", + "name": "Reddam, Venkateswara Reddy", + "orcid": "0000-0001-6817-2966" }, { "name": "freec84" diff --git a/doc/source/index.rst b/doc/source/index.rst index b768a57d71..210161b8bf 100644 --- a/doc/source/index.rst +++ b/doc/source/index.rst @@ -92,6 +92,7 @@ contributed code and discussion (in rough order of appearance): * Igor Solovey * Jon Haitz Legarreta Gorroño * Katrin Leinweber +* Soichi Hayashi License reprise =============== From 570cdc1518a347ebe5f202392e76ce7e73c147f4 Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Fri, 15 Mar 2019 12:13:19 -0400 Subject: [PATCH 3/7] MAINT: Version 2.4.0 --- nibabel/info.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/nibabel/info.py b/nibabel/info.py index abe71735cd..1726d0e53d 100644 --- a/nibabel/info.py +++ b/nibabel/info.py @@ -19,8 +19,8 @@ _version_major = 2 _version_minor = 4 _version_micro = 0 -_version_extra = 'dev' -# _version_extra = '' +# _version_extra = 'dev' +_version_extra = '' # Format expected by setup.py and doc/source/conf.py: string of form "X.Y.Z" __version__ = "%s.%s.%s%s" % (_version_major, From 6d031e3f5393ad16ca47e81040f6a15d181de80d Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Tue, 19 Mar 2019 15:31:24 -0400 Subject: [PATCH 4/7] MNT: Update author list, mailmap, zenodo --- .mailmap | 1 + .zenodo.json | 7 +++++++ doc/source/index.rst | 2 ++ 3 files changed, 10 insertions(+) diff --git a/.mailmap b/.mailmap index 00f7e70e83..d0f2bd6aff 100644 --- a/.mailmap +++ b/.mailmap @@ -38,6 +38,7 @@ Jean-Baptiste Poline jbpoline Jon Haitz Legarreta Jon Haitz Legarreta Gorroño Kesshi Jordan kesshijordan Kevin S. Hahn Kevin S. Hahn +Konstantinos Raktivan constracti Krish Subramaniam Krish Subramaniam Marc-Alexandre Côté Marc-Alexandre Cote Mathias Goncalves mathiasg diff --git a/.zenodo.json b/.zenodo.json index 525f64c8df..10d7a54128 100644 --- a/.zenodo.json +++ b/.zenodo.json @@ -162,6 +162,9 @@ { "name": "Nguyen, Ly" }, + { + "name": "Reddigari, Samir" + }, { "name": "St-Jean, Samuel" }, @@ -247,6 +250,10 @@ "name": "Leinweber, Katrin", "orcid": "0000-0001-5135-5758" }, + { + "affiliation": "National Technical University of Athens, Greece", + "name": "Raktivan, Konstantinos" + }, { "affiliation": "Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg, Erlangen, Germany", "name": "Fischer, Peter", diff --git a/doc/source/index.rst b/doc/source/index.rst index 550dc8a0cb..d63844f712 100644 --- a/doc/source/index.rst +++ b/doc/source/index.rst @@ -93,6 +93,8 @@ contributed code and discussion (in rough order of appearance): * Jon Haitz Legarreta Gorroño * Katrin Leinweber * Soichi Hayashi +* Samir Reddigari +* Konstantinos Raktivan License reprise =============== From 42f3c9bce8d81ba489facc461417a0ad970bf1c5 Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Tue, 19 Mar 2019 16:41:18 -0400 Subject: [PATCH 5/7] DOC: Update changelog --- Changelog | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/Changelog b/Changelog index 73114f8cdf..0aae6b0212 100644 --- a/Changelog +++ b/Changelog @@ -33,12 +33,34 @@ New features Enhancements ------------ +* Accept TCK files produced by tools with other delimiter/EOF defaults + (pr/720) (Soichi Hayashi, reviewed by CM, MB, MC) +* Allow BrainModels or Parcels to contain a single vertex in CIFTI + (pr/739) (Michiel Cottaar, reviewed by CM) +* Support for ``NIFTI_XFORM_TEMPLATE_OTHER`` xform code (pr/743) (CM) Bug fixes --------- +* Skip refcheck in ArraySequence construction/extension (pr/719) (Ariel + Rokem, reviewed by CM, MC) +* Use safe resizing for ArraySequence extension (pr/724) (CM, reviewed + by MC) +* Fix typo in error message (pr/726) (Jon Haitz Legarreta Gorroño, + reviewed by CM) +* Support DICOM slice sorting in Python 3 (pr/728) (Samir Reddigari, + reviewed by CM) +* Correctly reorient dim_info when reorienting NIfTI images + (Konstantinos Raktivan, CM, reviewed by CM) Maintenance ----------- +* Import updates to reduce upstream deprecation warnings (pr/711, + pr/705, pr/738) (EL, YOH, reviewed by CM) +* Delay import of ``nibabel.testing``, ``nose`` and ``mock`` to speed up + import (pr/699) (CM) +* Increase coverage testing, drop coveralls (pr/722, pr/732) (CM) +* Add Zenodo metadata, sorted by commits (pr/732) (CM + others) +* Update author listing and copyrights (pr/742) (MB, reviewed by CM) API changes and deprecations ---------------------------- From 1672e994233d9aaa8125f76c50731ec2d3f59e91 Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Mon, 1 Apr 2019 10:18:01 -0400 Subject: [PATCH 6/7] DOC: Update changelog, zenodo --- .zenodo.json | 17 +++++++++++------ Changelog | 7 +++---- 2 files changed, 14 insertions(+), 10 deletions(-) diff --git a/.zenodo.json b/.zenodo.json index 10d7a54128..e4ea56b108 100644 --- a/.zenodo.json +++ b/.zenodo.json @@ -38,6 +38,11 @@ "name": "Halchenko, Yaroslav O.", "orcid": "0000-0003-3456-2493" }, + { + "affiliation": "Wellcome Centre for Integrative Neuroimaging, University of Oxford, UK", + "name": "Cottaar, Michiel", + "orcid": "0000-0003-4679-7724" + }, { "affiliation": "MIT, HMS", "name": "Ghosh, Satrajit", @@ -82,11 +87,6 @@ { "name": "Moloney, Brendan" }, - { - "affiliation": "Wellcome Centre for Integrative Neuroimaging, University of Oxford, UK", - "name": "Cottaar, Michiel", - "orcid": "0000-0003-4679-7724" - }, { "name": "Burns, Christopher" }, @@ -163,7 +163,9 @@ "name": "Nguyen, Ly" }, { - "name": "Reddigari, Samir" + "affiliation": "BrainSpec, Boston, MA", + "name": "Reddigari, Samir", + "orcid": "0000-0003-1472-5881" }, { "name": "St-Jean, Samuel" @@ -210,6 +212,9 @@ "name": "Jordan, Kesshi", "orcid": "0000-0001-6313-0580" }, + { + "name": "Cieslak, Matt" + }, { "name": "Moreno, Miguel Estevan" }, diff --git a/Changelog b/Changelog index 0aae6b0212..6637d0b995 100644 --- a/Changelog +++ b/Changelog @@ -25,11 +25,13 @@ Eric Larson (EL), Demien Wasserman, and Stephan Gerhard. References like "pr/298" refer to github pull request numbers. -2.4.0 (Monday 25 March 2019) +2.4.0 (Monday 1 April 2019) ============================ New features ------------ +* Alternative ``Axis``-based interface for manipulating CIFTI-2 headers + (pr/641) (Michiel Cottaar, reviewed by Demien Wasserman, CM, SG) Enhancements ------------ @@ -62,9 +64,6 @@ Maintenance * Add Zenodo metadata, sorted by commits (pr/732) (CM + others) * Update author listing and copyrights (pr/742) (MB, reviewed by CM) -API changes and deprecations ----------------------------- - 2.3.3 (Wednesday 16 January 2019) ================================= From 53195805c2359f807b790e0b5e6912b0312f024d Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Mon, 1 Apr 2019 10:23:16 -0400 Subject: [PATCH 7/7] DOC: Add Matt Cieslak to author list --- doc/source/index.rst | 1 + 1 file changed, 1 insertion(+) diff --git a/doc/source/index.rst b/doc/source/index.rst index d63844f712..453224bffb 100644 --- a/doc/source/index.rst +++ b/doc/source/index.rst @@ -95,6 +95,7 @@ contributed code and discussion (in rough order of appearance): * Soichi Hayashi * Samir Reddigari * Konstantinos Raktivan +* Matt Cieslak License reprise ===============