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1.1.9 (February 25, 2019)
=========================
##### [Full changelog](https://github.com/nipy/nipype/milestone/30?closed=1)
* FIX: Make positional arguments to LaplacianThickness require previous argument (https://github.com/nipy/nipype/pull/2848)
* FIX: Import math and csv modules for bids_gen_info (https://github.com/nipy/nipype/pull/2881)
* FIX: Ensure outputs can be listed in camino.ProcStreamlines by defining instance variable (https://github.com/nipy/nipype/pull/2739)
* ENH: Allow afni.MaskTool to take multiple input files (https://github.com/nipy/nipype/pull/2892)
* ENH: Add flags dictionary input to spm.Level1Design (https://github.com/nipy/nipype/pull/2861)
* ENH: Threshold stddev once only in TSNR (https://github.com/nipy/nipype/pull/2883)
* ENH: Add workbench.CiftiSmooth interface (https://github.com/nipy/nipype/pull/2871)
* DOC: Replace initialism typo in comment with intended phrase (https://github.com/nipy/nipype/pull/2875)
* DOC: Fix typos in ANTs Registration input documentation (https://github.com/nipy/nipype/pull/2869)
1.1.8 (January 28, 2019)
========================
##### [Full changelog](https://github.com/nipy/nipype/milestone/29?closed=1)
* FIX: ANTS LaplacianThickness cmdline opts fixed up (https://github.com/nipy/nipype/pull/2846)
* FIX: Resolve LinAlgError during SVD (https://github.com/nipy/nipype/pull/2838)
* ENH: Add interfaces wrapping DIPY worflows (https://github.com/nipy/nipype/pull/2830)
* ENH: Update BIDSDataGrabber for pybids 0.7 (https://github.com/nipy/nipype/pull/2737)
* ENH: Add FSL `eddy_quad` interface (https://github.com/nipy/nipype/pull/2825)
* ENH: Support tckgen -select in MRtrix3 v3+ (https://github.com/nipy/nipype/pull/2823)
* ENH: Support for BIDS event files (https://github.com/nipy/nipype/pull/2845)
* ENH: CompositeTransformUtil, new ANTs interface (https://github.com/nipy/nipype/pull/2785)
* RF: Move pytest and pytest-xdist from general requirement into tests_required (https://github.com/nipy/nipype/pull/2850)
* DOC: Add S3DataGrabber example (https://github.com/nipy/nipype/pull/2849)
* DOC: Skip conftest module in API generation (https://github.com/nipy/nipype/pull/2852)
* DOC: Hyperlink DOIs to preferred resolver (https://github.com/nipy/nipype/pull/2833)
* MAINT: Install numpy!=1.16.0 from conda in Docker (https://github.com/nipy/nipype/pull/2862)
* MAINT: Drop pytest-xdist requirement, minimum pytest version (https://github.com/nipy/nipype/pull/2856)
* MAINT: Disable numpy 1.16.0 for Py2.7 (https://github.com/nipy/nipype/pull/2855)
1.1.7 (December 17, 2018)
=========================
##### [Full changelog](https://github.com/nipy/nipype/milestone/28?closed=1)
* FIX: Copy node list before generating a flat graph (https://github.com/nipy/nipype/pull/2828)
* FIX: Update pytest req'd version to 3.6 (https://github.com/nipy/nipype/pull/2827)
* FIX: Set ResourceMonitor.fname to an absolute path (https://github.com/nipy/nipype/pull/2824)
* FIX: Order of SPM.NewSegment channel_info boolean tuple is (Field, Corrected) (https://github.com/nipy/nipype/pull/2817)
* FIX: Indices were swapped for memory and cpu profile data (https://github.com/nipy/nipype/pull/2816)
* FIX: ``status_callback`` not called with ``stop_on_first_crash`` (https://github.com/nipy/nipype/pull/2810)
* FIX: Change undefined ScriptError on LFS plugin to IOError (https://github.com/nipy/nipype/pull/2803)
* ENH: Add NaN failure mode to CompCor interfaces (https://github.com/nipy/nipype/pull/2819)
* ENH: Enable cnr_maps and residuals outputs for FSL eddy (https://github.com/nipy/nipype/pull/2750)
* ENH: Improve ``str2bool`` + doctests (https://github.com/nipy/nipype/pull/2807)
* TST: Improve py.test configuration of doctests (https://github.com/nipy/nipype/pull/2802)
* DOC: Update DOI badge to point to all versions (https://github.com/nipy/nipype/pull/2804)
* MAINT: Offload interfaces with help formatting (https://github.com/nipy/nipype/pull/2797)
* MAINT: Reduce minimal code redundancy in filemanip.get_dependencies (https://github.com/nipy/nipype/pull/2782)
* MAINT: Delayed imports to reduce import time (https://github.com/nipy/nipype/pull/2809)
1.1.6 (November 26, 2018)
=========================
##### [Full changelog](https://github.com/nipy/nipype/milestone/27?closed=1)
* FIX: MapNodes fail when ``MultiProcPlugin`` passed by instance (https://github.com/nipy/nipype/pull/2786)
* FIX: --fineTune arguments order for MeshFix command (https://github.com/nipy/nipype/pull/2780)
* ENH: Add mp_context plugin arg for MultiProc (https://github.com/nipy/nipype/pull/2778)
* ENH: Create a crashfile even if 'stop_on_first_crash' is set (https://github.com/nipy/nipype/pull/2774)
* ENH: Add ExtractedBrainN4 output to ANTs CorticalThickness interface (https://github.com/nipy/nipype/pull/2784)
* STY: Combine split import (https://github.com/nipy/nipype/pull/2801)
* DOC: use https in css stylesheet url (https://github.com/nipy/nipype/pull/2779)
* MAINT: Outsource ``get_filecopy_info()`` from interfaces (https://github.com/nipy/nipype/pull/2798)
* MAINT: Import only Sequence to avoid DeprecationWarning (https://github.com/nipy/nipype/pull/2793)
* MAINT: One less DeprecationWarning (configparser) (https://github.com/nipy/nipype/pull/2794)
* MAINT: DeprecationWarning: use ``HasTraits.trait_set`` instead (https://github.com/nipy/nipype/pull/2792)
* MAINT: Stop using deprecated ``logger.warn()`` (https://github.com/nipy/nipype/pull/2788)
* MAINT: Move ``interfaces.base.run_command`` to ``nipype.utils.subprocess`` (https://github.com/nipy/nipype/pull/2777)
* MAINT: Force numpy>=1.15.4 when Python>=3.7 (https://github.com/nipy/nipype/pull/2775)
1.1.5 (November 08, 2018)
=========================
Hotfix release.
##### [Full changelog](https://github.com/nipy/nipype/milestone/26?closed=1)
* ENH: Allow timeouts during SLURM job status checks (https://github.com/nipy/nipype/pull/2767)
* RF: Subclass non-daemon variants of all multiprocessing contexts (https://github.com/nipy/nipype/pull/2771)
1.1.4 (October 31, 2018)
========================
##### [Full changelog](https://github.com/nipy/nipype/milestone/25?closed=1)
* FIX: Python 2.7-3.7.1 compatible NonDaemonPool (https://github.com/nipy/nipype/pull/2754)
* FIX: VRML typo (VMRL) in MeshFix (https://github.com/nipy/nipype/pull/2757)
* FIX: Refine FSL.split output identification (https://github.com/nipy/nipype/pull/2746)
* FIX: Reuse _gen_filename logic in ants.LaplacianThickness (https://github.com/nipy/nipype/pull/2734)
* FIX: Remove 'reg_term' default from dwi2tensor interface (https://github.com/nipy/nipype/pull/2731)
* FIX: Keep profile files when ``remove_unnecessary_outputs = true`` (https://github.com/nipy/nipype/pull/2718)
* ENH: Add afni.LocalStat and afni.ReHo, update afni.ROIStats inputs (https://github.com/nipy/nipype/pull/2740)
* ENH: Add compression option for bru2nii (https://github.com/nipy/nipype/pull/2762)
* ENH: Add slice_encoding_direction input to TShift (https://github.com/nipy/nipype/pull/2753)
* ENH: Add 'sse' output to FSL DTIFit interface (https://github.com/nipy/nipype/pull/2749)
* ENH: Update ``ants.LaplacianThickness`` to use ``name_source`` (https://github.com/nipy/nipype/pull/2747)
* ENH: Add tab completion for node and interface inputs properties (https://github.com/nipy/nipype/pull/2735)
* ENH: enable/disable resource monitor in the fixture per test (https://github.com/nipy/nipype/pull/2725)
* TEST: Update expected dotfile text for networkx 1.x (https://github.com/nipy/nipype/pull/2730)
* DOC: Move user docs from nipype to nipype_tutorial (https://github.com/nipy/nipype/pull/2726)
* DOC: Use consistent name in reconall workflow docstring (https://github.com/nipy/nipype/pull/2758)
* MAINT: Use neurodocker 0.4.1 + apt install afni (https://github.com/nipy/nipype/pull/2707)
* MAINT: Fix prov and rdflib in nipype (https://github.com/nipy/nipype/pull/2701)
* MAINT: Correct readthedocs build error (https://github.com/nipy/nipype/pull/2723)
* MAINT: Pin codecov to <5.0 so Travis is fixed (https://github.com/nipy/nipype/pull/2728)
* CI: Lock travis pybids 0.6.5 (https://github.com/nipy/nipype/pull/2720)
1.1.3 (September 24, 2018)
==========================
##### [Full changelog](https://github.com/nipy/nipype/milestone/24?closed=1)
* FIX: Return afni.Qwarp outputs as absolute paths (https://github.com/nipy/nipype/pull/2705)
* FIX: Add informative error for interfaces that fail to return valid runtime object (https://github.com/nipy/nipype/pull/2692)
* FIX: Construct MCFLIRT output paths relative to out_file (https://github.com/nipy/nipype/pull/2703)
* FIX: SLURM plugin polling (https://github.com/nipy/nipype/pull/2693)
* FIX: Handle missing substring in SPM docs (https://github.com/nipy/nipype/pull/2691)
* ENH: Add colorFA output to DIPY DTI interface (https://github.com/nipy/nipype/pull/2695)
* RF: Use runtime.cwd in Rename (https://github.com/nipy/nipype/pull/2688)
* DOC: Fix naming of motion parameters (roll/yaw swapped) (https://github.com/nipy/nipype/pull/2696)
* DOC: Update links to user and developer help forums (https://github.com/nipy/nipype/pull/2686)
* CI: Test 3.7, resume testing nipy extras (https://github.com/nipy/nipype/pull/2682)
1.1.2 (August 11, 2018)
=======================
Hot-fix release, resolving incorrect dependencies in 1.1.1 wheel.
##### [Full changelog](https://github.com/nipy/nipype/milestone/23?closed=1)
* FIX: Read BIDS config.json under grabbids or layout (https://github.com/nipy/nipype/pull/2679)
* FIX: Node __repr__ and detailed graph expansion (https://github.com/nipy/nipype/pull/2669)
* FIX: Prevent double-collapsing of nested lists by OutputMultiObject (https://github.com/nipy/nipype/pull/2673)
* ENH: Add interface to SPM realign_unwarp (https://github.com/nipy/nipype/pull/2635)
* MAINT: Fix wheel build to ensure futures is only required in Python 2 (https://github.com/nipy/nipype/pull/2678)
* MAINT: ensure interface _cmd only includes executable (https://github.com/nipy/nipype/pull/2674)
* MAINT: Issue template: Pretty print platform details (https://github.com/nipy/nipype/pull/2671)
* CI: removing travis_retry for pip install pytest xdist 1.22.5 (https://github.com/nipy/nipype/pull/2664)
1.1.1 (July 30, 2018)
=====================
##### [Full changelog](https://github.com/nipy/nipype/milestone/22?closed=1)
* FIX: Un-set incorrect default options in TOPUP (https://github.com/nipy/nipype/pull/2637)
* FIX: Copy FSCommand.version to ReconAll.version (https://github.com/nipy/nipype/pull/2656)
* FIX: Various BIDSDataGrabber fixes (https://github.com/nipy/nipype/pull/2651)
* FIX: changing Node._output_dir to realpath (https://github.com/nipy/nipype/pull/2639)
* FIX: Typo in DWIExtract of Mrtrix3interface (https://github.com/nipy/nipype/pull/2634)
* FIX: Typo in FSLXCommandInputSpec (https://github.com/nipy/nipype/pull/2628)
* ENH: Allow transform to be saved from AFNI 3dWarp (https://github.com/nipy/nipype/pull/2642)
* ENH: Allow BIDS-style slice timings to be passed directly to TShift (https://github.com/nipy/nipype/pull/2608)
* ENH: S3 access using instance role (https://github.com/nipy/nipype/pull/2621)
* ENH Minor improvements to PR template (https://github.com/nipy/nipype/pull/2636)
* TEST: make specs (https://github.com/nipy/nipype/pull/2653)
* DOC: update neurodocker tutorial for neurodocker version 0.4.0 (https://github.com/nipy/nipype/pull/2647)
* MAINT: Remove vestiges of nose testing library (https://github.com/nipy/nipype/pull/2662)
* MAINT: Make pytest-xdist a dependency (https://github.com/nipy/nipype/pull/2649)
* CI: Install pytest>=3.4 in Travis (https://github.com/nipy/nipype/pull/2659)
1.1.0 (July 04, 2018)
=====================
###### [Full changelog](https://github.com/nipy/nipype/milestone/21?closed=1)
* RF: Futures-based MultiProc (https://github.com/nipy/nipype/pull/2598)
* FIX: Avoid closing file descriptors on Windows (https://github.com/nipy/nipype/pull/2617)
* MAINT: Play nice with external logging (https://github.com/nipy/nipype/pull/2611)
* MAINT: Remove ignore_exception and terminal_output traits from input specs (https://github.com/nipy/nipype/pull/2618)
* MAINT: Converge autotest names (https://github.com/nipy/nipype/pull/2610)
* ENH: Add versioning metadata to crash files (https://github.com/nipy/nipype/pull/2626)
* ENH add -dsort option to TProject (https://github.com/nipy/nipype/pull/2623)
* ENH: Add Rescale interface (https://github.com/nipy/nipype/pull/2599)
* DOC: Improve documentation for ANTs/FSL interfaces (https://github.com/nipy/nipype/pull/2593)
* CI: Stop using Miniconda on Travis (https://github.com/nipy/nipype/pull/2600)
* CI: Add PyPI validation on rel/* branches (https://github.com/nipy/nipype/pull/2603)
1.0.4 (May 29, 2018)
====================
###### [Full changelog](https://github.com/nipy/nipype/milestone/20?closed=1)
* FIX: Update logging levels in enable_debug_mode (https://github.com/nipy/nipype/pull/2595)
* FIX: Set default result in DistributedPluginBase._clean_queue (https://github.com/nipy/nipype/pull/2596)
* FIX: Correctly connect JoinNodes in nested iterables (https://github.com/nipy/nipype/pull/2597)
* FIX: DTITK nonlinear workflow origin reslicing (https://github.com/nipy/nipype/pull/2561)
* FIX: ResponseSD support for multiple b-vals (https://github.com/nipy/nipype/pull/2582)
* FIX: Workaround to ICA-AROMA change of directory (https://github.com/nipy/nipype/pull/2566)
* FIX/TEST: Gunzip cleanup and test (https://github.com/nipy/nipype/pull/2564)
* FIX: Print UID in crashfile if login name is unavailable (https://github.com/nipy/nipype/pull/2563)
* ENH: initial connectome workbench support (https://github.com/nipy/nipype/pull/2594)
* ENH: AFNI (3d)LocalBistat interface (https://github.com/nipy/nipype/pull/2590)
* ENH: Reorient interface (https://github.com/nipy/nipype/pull/2572)
* ENH: FSL slice interface (https://github.com/nipy/nipype/pull/2585)
* ENH: LabelGeometryMeasures interface (https://github.com/nipy/nipype/pull/2586)
* ENH: MRTrix3 dwidenoise interface (https://github.com/nipy/nipype/pull/2568)
* ENH: ReportCapableInterface mix-in/base interface (https://github.com/nipy/nipype/pull/2560)
* CI: Move PyPI deployment to Circle (https://github.com/nipy/nipype/pull/2587)
* CI: Submit Travis results to codecov (https://github.com/nipy/nipype/pull/2574)
1.0.3 (April 30, 2018)
======================
###### [Full changelog](https://github.com/nipy/nipype/milestone/19?closed=1)
* FIX: Propagate explicit Workflow config to Nodes (https://github.com/nipy/nipype/pull/2559)
* FIX: Return non-enhanced volumes from dwi_flirt (https://github.com/nipy/nipype/pull/2547)
* FIX: Skip filename generation when required fields are missing (https://github.com/nipy/nipype/pull/2549)
* FIX: Fix Afni's Allineate hashing and out_file (https://github.com/nipy/nipype/pull/2502)
* FIX: Replace deprecated ``HasTraits.get`` with ``trait_get`` (https://github.com/nipy/nipype/pull/2534)
* FIX: Typo in "antsRegistrationSyNQuick.sh" (https://github.com/nipy/nipype/pull/2544)
* FIX: DTITK Interface (https://github.com/nipy/nipype/pull/2514)
* FIX: Add ``-mas`` argument to fsl.utils.ImageMaths (https://github.com/nipy/nipype/pull/2529)
* FIX: Build cmdline from working directory (https://github.com/nipy/nipype/pull/2521)
* FIX: FSL orthogonalization bug (https://github.com/nipy/nipype/pull/2523)
* FIX: Re-enable dcm2niix source_names (https://github.com/nipy/nipype/pull/2550)
* ENH: Add an activation count map interface (https://github.com/nipy/nipype/pull/2522)
* ENH: Revise the implementation of FuzzyOverlap (https://github.com/nipy/nipype/pull/2530)
* ENH: Add MultiObject, ensure/simplify_list; alias old names for 1.x compatibility (https://github.com/nipy/nipype/pull/2517)
* ENH: Add LibraryBaseInterface (https://github.com/nipy/nipype/pull/2538)
* ENH: Define default output file template for afni.CatMatvec (https://github.com/nipy/nipype/pull/2527)
* MAINT: Deprecate terminal_output and ignore_exception from CommandLine (https://github.com/nipy/nipype/pull/2552)
* MAINT: Set traits default values properly (https://github.com/nipy/nipype/pull/2533)
* MAINT: use RawConfigParser (https://github.com/nipy/nipype/pull/2542)
* MAINT: Minor autotest cleanups (https://github.com/nipy/nipype/pull/2519)
* CI: Add retry script for Docker commands (https://github.com/nipy/nipype/pull/2516)
1.0.2 (March 27, 2018)
======================
###### [Full changelog](https://github.com/nipy/nipype/milestone/16?closed=1)
* FIX: dcm2niix interface (https://github.com/nipy/nipype/pull/2498)
* FIX: mark .niml.dset as special extension in utils.filemanip (https://github.com/nipy/nipype/pull/2495)
* FIX: handle automatic module creation, name extraction, default value (https://github.com/nipy/nipype/pull/2490)
* FIX: Check and report mount table parsing failures (https://github.com/nipy/nipype/pull/2476)
* FIX: Check against full node name when reconnecting JoinNodes (https://github.com/nipy/nipype/pull/2479)
* DOC: Add tutorials, porcupine to users TOC (https://github.com/nipy/nipype/pull/2503
* DOC: Contributing and testing (https://github.com/nipy/nipype/pull/2482)
* DOC: Describe 'orphaned' tag in CONTRIBUTING (https://github.com/nipy/nipype/pull/2481)
* DOC: Add details for dcm2niix output filename pattern (https://github.com/nipy/nipype/pull/2512)
* ENH: Add interface for AFNI 3dNwarpAdjust (https://github.com/nipy/nipype/pull/2450)
* ENH: Update SSHDataGrabber to fetch related files (https://github.com/nipy/nipype/pull/2104)
* ENH: Add interpolation order parameter to NiftyReg's RegTools (https://github.com/nipy/nipype/pull/2471)
* MAINT: Stray warnings and exceptions (https://github.com/nipy/nipype/pull/2478)
* MAINT: Add dev install option, update CONTRIBUTING (https://github.com/nipy/nipype/pull/2477)
* MAINT: Sync requirements with info.py (https://github.com/nipy/nipype/pull/2472)
* CI: Update Travis builds, Docker to use latest miniconda (https://github.com/nipy/nipype/pull/2455)
* TEST: Parallelize pytest (https://github.com/nipy/nipype/pull/2469)
1.0.1 (February 27, 2018)
=========================
###### [Full changelog](https://github.com/nipy/nipype/milestone/16?closed=1)
* FIX: Small bug in freesurfer label2annot fill_thresh specs [#2377](https://github.com/nipy/nipype/pull/2377)
* FIX: Error creating gradients in DTIRecon [#2460](https://github.com/nipy/nipype/pull/2460)
* FIX: improve matlab_cmd [#2452](https://github.com/nipy/nipype/pull/2452)
* FIX: Extract unit information from image header in CompCor [#2458](https://github.com/nipy/nipype/pull/2458)
* FIX: Update pybids data directory, unbundle out-of-date numpydoc [#2437](https://github.com/nipy/nipype/pull/2437)
* FIX: Out_file bugs in Afni.Zcat and Afni.Merge interfaces [#2424](https://github.com/nipy/nipype/pull/2424)
* FIX: Re-enable spm.Realign to take lists of lists of files [#2409](https://github.com/nipy/nipype/pull/2409)
* FIX: Remove deprecated output from ICC interface [#2422](https://github.com/nipy/nipype/pull/2422)
* FIX: Argstr for mask in Afni.BlurToFWHM [#2418](https://github.com/nipy/nipype/pull/2418)
* FIX: Default value for sbatch_args (SLURMGraph) [#2417](https://github.com/nipy/nipype/pull/2417)
* FIX: Ortvec argstr for Afni.Deconvolve [#2415](https://github.com/nipy/nipype/pull/2415)
* FIX: Bug fixes for afni.model [#2398](https://github.com/nipy/nipype/pull/2398)
* DOC: Add brief neurodocker tutorial [#2464](https://github.com/nipy/nipype/pull/2464)
* DOC: Fix tutorials [#2459](https://github.com/nipy/nipype/pull/2459)
* ENH: antsRegistrationSyNQuick interface [#2453](https://github.com/nipy/nipype/pull/2453)
* ENH: Automate updates of CHANGES [#2440](https://github.com/nipy/nipype/pull/2440)
* ENH: Add SPM Fieldmap Tool wrapper [#1905](https://github.com/nipy/nipype/pull/1905)
* ENH: Additional option for DataGrabber [#1915](https://github.com/nipy/nipype/pull/1915)
* ENH: Add 3dTproject AFNI interface, Fix OneDToolPy, Add -noFDR flag to 3dDeconvolve [#2426](https://github.com/nipy/nipype/pull/2426)
* ENH: c3d/c4d interface [#2430](https://github.com/nipy/nipype/pull/2430)
* ENH: Allow input weight for AFNI's volreg. [#2396](https://github.com/nipy/nipype/pull/2396)
* ENH: Delay crashing if exception is raised in local hash check [#2410](https://github.com/nipy/nipype/pull/2410)
* CI: Add doctests to pytest script [#2449](https://github.com/nipy/nipype/pull/2449)
* CI: Ignore tests in calculating coverage [#2443](https://github.com/nipy/nipype/pull/2443)
* CI: Saturate Circle workflow [#2386](https://github.com/nipy/nipype/pull/2386)
* REF: Update and factor mount table parsing [#2444](https://github.com/nipy/nipype/pull/2444)
* REF: Make ignore_exception a class attribute [#2414](https://github.com/nipy/nipype/pull/2414)
1.0.0 (January 24, 2018)
========================
###### [Full changelog](https://github.com/nipy/nipype/milestone/16?closed=1)
* FIX: Change to interface workdir within ``Interface.run()`` instead Node (https://github.com/nipy/nipype/pull/2384)
* FIX: PBS plugin submissions (https://github.com/nipy/nipype/pull/2344)
* FIX: Graph plugins submissions (https://github.com/nipy/nipype/pull/2359)
* FIX: Logging error if % in interface command (https://github.com/nipy/nipype/pull/2364)
* FIX: Robustly handled outputs of 3dFWHMx across different versions of AFNI (https://github.com/nipy/nipype/pull/2373)
* FIX: Cluster threshold in randomise + change default prefix (https://github.com/nipy/nipype/pull/2369)
* FIX: Errors parsing ``$DISPLAY`` (https://github.com/nipy/nipype/pull/2363)
* FIX: MultiProc starting workers at dubious wd (https://github.com/nipy/nipype/pull/2368)
* FIX: Explicitly collect MultiProc job IDs (https://github.com/nipy/nipype/pull/2378)
* FIX: Correct Windows environment canonicalization (https://github.com/nipy/nipype/pull/2328)
* FIX: Linked libraries (https://github.com/nipy/nipype/pull/2322)
* REF+FIX: Move BIDSDataGrabber to `interfaces.io` + fix correct default behavior (https://github.com/nipy/nipype/pull/2336)
* REF+MAINT: Simplify hashing (https://github.com/nipy/nipype/pull/2383)
* MAINT: Cleanup Interfaces base (https://github.com/nipy/nipype/pull/2387)
* MAINT: Cleanup EngineBase (https://github.com/nipy/nipype/pull/2376)
* MAINT: Cleaning / simplify ``Node`` (https://github.com/nipy/nipype/pull/2325)
* MAINT+ENH: Update and extend MRtrix3 interfaces (https://github.com/nipy/nipype/pull/2338)
* ENH: Add AFNI interface for 3dConvertDset (https://github.com/nipy/nipype/pull/2337)
* ENH: Allow specific interface command prefixes (https://github.com/nipy/nipype/pull/2379)
* STY: Cleanup of PEP8 violations (https://github.com/nipy/nipype/pull/2358)
* STY: Cleanup of trailing spaces and adding of missing newlines at end of files (https://github.com/nipy/nipype/pull/2355)
* STY: Apply yapf to codebase (https://github.com/nipy/nipype/pull/2371)
* DOC: Updated guide for contributing (https://github.com/nipy/nipype/pull/2393)