TEST: Update tests

Author: effigies

nipype/interfaces/freesurfer/tests/test_auto_GLMFit.py

@@ -13,6 +13,12 @@ def test_GLMFit_inputs():
         args=dict(
             argstr="%s",
         ),
+        bp_clip_max=dict(
+            argstr="--bp-clip-max %f",
+        ),
+        bp_clip_neg=dict(
+            argstr="--bp-clip-neg",
+        ),
         calc_AR1=dict(
             argstr="--tar1",
         ),

nipype/interfaces/freesurfer/tests/test_auto_GTMPVC.py

@@ -207,6 +207,9 @@ def test_GTMPVC_inputs():
 
 def test_GTMPVC_outputs():
     output_map = dict(
+        eres=dict(
+            extensions=None,
+        ),
         gtm_file=dict(
             extensions=None,
         ),
@@ -256,6 +259,18 @@ def test_GTMPVC_outputs():
         reg_rbvpet2anat=dict(
             extensions=None,
         ),
+        seg=dict(
+            extensions=None,
+        ),
+        seg_ctab=dict(
+            extensions=None,
+        ),
+        tissue_fraction=dict(
+            extensions=None,
+        ),
+        tissue_fraction_psf=dict(
+            extensions=None,
+        ),
         yhat=dict(
             extensions=None,
         ),

nipype/interfaces/freesurfer/tests/test_auto_LoganRef.py nipype/interfaces/freesurfer/tests/test_auto_Logan.py

@@ -1,8 +1,8 @@
 # AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
-from ..petsurfer import LoganRef
+from ..petsurfer import Logan
 
 
-def test_LoganRef_inputs():
+def test_Logan_inputs():
     input_map = dict(
         allow_ill_cond=dict(
             argstr="--illcond",
@@ -13,6 +13,12 @@ def test_LoganRef_inputs():
         args=dict(
             argstr="%s",
         ),
+        bp_clip_max=dict(
+            argstr="--bp-clip-max %f",
+        ),
+        bp_clip_neg=dict(
+            argstr="--bp-clip-neg",
+        ),
         calc_AR1=dict(
             argstr="--tar1",
         ),
@@ -214,14 +220,14 @@ def test_LoganRef_inputs():
             xor=("weight_file", "weight_inv", "weight_sqrt"),
         ),
     )
-    inputs = LoganRef.input_spec()
+    inputs = Logan.input_spec()
 
     for key, metadata in list(input_map.items()):
         for metakey, value in list(metadata.items()):
             assert getattr(inputs.traits()[key], metakey) == value
 
 
-def test_LoganRef_outputs():
+def test_Logan_outputs():
     output_map = dict(
         beta_file=dict(
             extensions=None,
@@ -271,7 +277,7 @@ def test_LoganRef_outputs():
             extensions=None,
         ),
     )
-    outputs = LoganRef.output_spec()
+    outputs = Logan.output_spec()
 
     for key, metadata in list(output_map.items()):
         for metakey, value in list(metadata.items()):

nipype/interfaces/freesurfer/tests/test_auto_MRTM.py nipype/interfaces/freesurfer/tests/test_auto_MRTM1.py

@@ -1,8 +1,8 @@
 # AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
-from ..petsurfer import MRTM
+from ..petsurfer import MRTM1
 
 
-def test_MRTM_inputs():
+def test_MRTM1_inputs():
     input_map = dict(
         allow_ill_cond=dict(
             argstr="--illcond",
@@ -13,6 +13,12 @@ def test_MRTM_inputs():
         args=dict(
             argstr="%s",
         ),
+        bp_clip_max=dict(
+            argstr="--bp-clip-max %f",
+        ),
+        bp_clip_neg=dict(
+            argstr="--bp-clip-neg",
+        ),
         calc_AR1=dict(
             argstr="--tar1",
         ),
@@ -214,14 +220,14 @@ def test_MRTM_inputs():
             xor=("weight_file", "weight_inv", "weight_sqrt"),
         ),
     )
-    inputs = MRTM.input_spec()
+    inputs = MRTM1.input_spec()
 
     for key, metadata in list(input_map.items()):
         for metakey, value in list(metadata.items()):
             assert getattr(inputs.traits()[key], metakey) == value
 
 
-def test_MRTM_outputs():
+def test_MRTM1_outputs():
     output_map = dict(
         beta_file=dict(
             extensions=None,
@@ -271,7 +277,7 @@ def test_MRTM_outputs():
             extensions=None,
         ),
     )
-    outputs = MRTM.output_spec()
+    outputs = MRTM1.output_spec()
 
     for key, metadata in list(output_map.items()):
         for metakey, value in list(metadata.items()):

nipype/interfaces/freesurfer/tests/test_auto_MRTM2.py

@@ -13,6 +13,12 @@ def test_MRTM2_inputs():
         args=dict(
             argstr="%s",
         ),
+        bp_clip_max=dict(
+            argstr="--bp-clip-max %f",
+        ),
+        bp_clip_neg=dict(
+            argstr="--bp-clip-neg",
+        ),
         calc_AR1=dict(
             argstr="--tar1",
         ),

nipype/interfaces/freesurfer/tests/test_auto_OneSampleTTest.py

@@ -13,6 +13,12 @@ def test_OneSampleTTest_inputs():
         args=dict(
             argstr="%s",
         ),
+        bp_clip_max=dict(
+            argstr="--bp-clip-max %f",
+        ),
+        bp_clip_neg=dict(
+            argstr="--bp-clip-neg",
+        ),
         calc_AR1=dict(
             argstr="--tar1",
         ),