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nipy · Feb 24, 2020 · 84d48f4 · 84d48f4
1 parent b99c6a3
commit 84d48f4
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Showing 3 changed files with 25 additions and 9 deletions.
diff --git a/nipype/interfaces/base/traits_extension.py b/nipype/interfaces/base/traits_extension.py
@@ -26,6 +26,7 @@
 import traits.api as traits
 from traits.api import TraitType, Unicode
 from traits.trait_base import _Undefined
+
 try:
     # Moved in traits 6.0
     from traits.trait_type import NoDefaultSpecified

diff --git a/nipype/interfaces/fsl/tests/test_model.py b/nipype/interfaces/fsl/tests/test_model.py
@@ -7,18 +7,25 @@
 import nipype.interfaces.fsl.model as fsl
 from nipype.interfaces.fsl import no_fsl
 from pathlib import Path
-from ....pipeline import engine as pe 
+from ....pipeline import engine as pe
 
 
 @pytest.mark.skipif(no_fsl(), reason="fsl is not installed")
 def test_MultipleRegressDesign(tmpdir):
-    designer = pe.Node(fsl.MultipleRegressDesign(), name='designer', base_dir=str(tmpdir))
+    designer = pe.Node(
+        fsl.MultipleRegressDesign(), name="designer", base_dir=str(tmpdir)
+    )
     designer.inputs.regressors = dict(
         voice_stenght=[1, 1, 1], age=[0.2, 0.4, 0.5], BMI=[1, -1, 2]
     )
     con1 = ["voice_and_age", "T", ["age", "voice_stenght"], [0.5, 0.5]]
     con2 = ["just_BMI", "T", ["BMI"], [1]]
-    designer.inputs.contrasts = [con1, con2, ["con3", "F", [con1, con2]], ["con4", "F", [con2]]]
+    designer.inputs.contrasts = [
+        con1,
+        con2,
+        ["con3", "F", [con1, con2]],
+        ["con4", "F", [con2]],
+    ]
     res = designer.run()
     outputs = res.outputs.get_traitsfree()
 
@@ -27,7 +34,9 @@ def test_MultipleRegressDesign(tmpdir):
 
     expected_content = {}
 
-    expected_content["design_mat"] = """/NumWaves       3
+    expected_content[
+        "design_mat"
+    ] = """/NumWaves       3
 /NumPoints      3
 /PPheights      3.000000e+00 5.000000e-01 1.000000e+00
 
@@ -37,7 +46,9 @@ def test_MultipleRegressDesign(tmpdir):
 2.000000e+00 5.000000e-01 1.000000e+00
 """
 
-    expected_content["design_con"] = """/ContrastName1   voice_and_age
+    expected_content[
+        "design_con"
+    ] = """/ContrastName1   voice_and_age
 /ContrastName2   just_BMI
 /NumWaves       3
 /NumContrasts   2
@@ -49,15 +60,19 @@ def test_MultipleRegressDesign(tmpdir):
 1.000000e+00 0.000000e+00 0.000000e+00
 """
 
-    expected_content["design_fts"] = """/NumWaves       2
+    expected_content[
+        "design_fts"
+    ] = """/NumWaves       2
 /NumContrasts   2
 
 /Matrix
 1 1
 0 1
 """
 
-    expected_content["design_grp"] = """/NumWaves       1
+    expected_content[
+        "design_grp"
+    ] = """/NumWaves       1
 /NumPoints      3
 
 /Matrix

diff --git a/nipype/interfaces/io.py b/nipype/interfaces/io.py
@@ -450,7 +450,7 @@ def _check_s3_base_dir(self):
 
         s3_flag = base_directory.lower().startswith(s3_str)
         if s3_flag:
-            bucket_name = base_directory[len(s3_str):].partition('/')[0]
+            bucket_name = base_directory[len(s3_str) :].partition("/")[0]
 
         return s3_flag, bucket_name
 
@@ -610,7 +610,7 @@ def _upload_to_s3(self, bucket, src, dst):
 
         # Explicitly lower-case the "s3"
         if dst.lower().startswith(s3_str):
-            dst = s3_str + dst[len(s3_str):]
+            dst = s3_str + dst[len(s3_str) :]
 
         # If src is a directory, collect files (this assumes dst is a dir too)
         if os.path.isdir(src):