From ea55e81e6a486eab150f743b2c12e4c3f32b2a89 Mon Sep 17 00:00:00 2001
From: Yaroslav Halchenko <debian@onerussian.com>
Date: Mon, 26 Mar 2018 17:09:56 -0400
Subject: [PATCH 1/2] DOC: dcm2niix - details for the output filename pattern,
 minor typo fixes

---
 nipype/interfaces/dcm2nii.py | 21 +++++++++++++++++++--
 1 file changed, 19 insertions(+), 2 deletions(-)

diff --git a/nipype/interfaces/dcm2nii.py b/nipype/interfaces/dcm2nii.py
index 156c24404e..f548998511 100644
--- a/nipype/interfaces/dcm2nii.py
+++ b/nipype/interfaces/dcm2nii.py
@@ -275,7 +275,24 @@ class Dcm2niixInputSpec(CommandLineInputSpec):
         xor=['source_names'])
     out_filename = traits.Str(
         argstr="-f %s",
-        desc="Output filename")
+        desc="Output filename template ("
+             "%a=antenna (coil) number, " \
+             "%c=comments, " \
+             "%d=description, " \
+             "%e=echo number, " \
+             "%f=folder name, " \
+             "%i=ID of patient, " \
+             "%j=seriesInstanceUID, " \
+             "%k=studyInstanceUID, " \
+             "%m=manufacturer, " \
+             "%n=name of patient, " \
+             "%p=protocol, " \
+             "%s=series number, " \
+             "%t=time, " \
+             "%u=acquisition number, " \
+             "%v=vendor, " \
+             "%x=study ID; " \
+             "%z=sequence name)")
     output_dir = Directory(
         ".",
         usedefault=True,
@@ -320,7 +337,7 @@ class Dcm2niixInputSpec(CommandLineInputSpec):
         False,
         argstr='-t',
         usedefault=True,
-        desc="Flag if text notes includes private patient details")
+        desc="Flag if text notes include private patient details")
     compression = traits.Enum(
         1, 2, 3, 4, 5, 6, 7, 8, 9,
         argstr='-%d',

From 230ec4b1a5bf51841474938e1c7e878fd9081f67 Mon Sep 17 00:00:00 2001
From: Chris Markiewicz <effigies@gmail.com>
Date: Tue, 27 Mar 2018 09:39:45 -0400
Subject: [PATCH 2/2] STY: Unnecessary backslashes

---
 nipype/interfaces/dcm2nii.py | 32 ++++++++++++++++----------------
 1 file changed, 16 insertions(+), 16 deletions(-)

diff --git a/nipype/interfaces/dcm2nii.py b/nipype/interfaces/dcm2nii.py
index f548998511..cc3f53d44c 100644
--- a/nipype/interfaces/dcm2nii.py
+++ b/nipype/interfaces/dcm2nii.py
@@ -276,22 +276,22 @@ class Dcm2niixInputSpec(CommandLineInputSpec):
     out_filename = traits.Str(
         argstr="-f %s",
         desc="Output filename template ("
-             "%a=antenna (coil) number, " \
-             "%c=comments, " \
-             "%d=description, " \
-             "%e=echo number, " \
-             "%f=folder name, " \
-             "%i=ID of patient, " \
-             "%j=seriesInstanceUID, " \
-             "%k=studyInstanceUID, " \
-             "%m=manufacturer, " \
-             "%n=name of patient, " \
-             "%p=protocol, " \
-             "%s=series number, " \
-             "%t=time, " \
-             "%u=acquisition number, " \
-             "%v=vendor, " \
-             "%x=study ID; " \
+             "%a=antenna (coil) number, "
+             "%c=comments, "
+             "%d=description, "
+             "%e=echo number, "
+             "%f=folder name, "
+             "%i=ID of patient, "
+             "%j=seriesInstanceUID, "
+             "%k=studyInstanceUID, "
+             "%m=manufacturer, "
+             "%n=name of patient, "
+             "%p=protocol, "
+             "%s=series number, "
+             "%t=time, "
+             "%u=acquisition number, "
+             "%v=vendor, "
+             "%x=study ID; "
              "%z=sequence name)")
     output_dir = Directory(
         ".",