nlm-ingestor/nlm_ingestor/ingestor/text_ingestor.py at main · nlmatics/nlm-ingestor · GitHub

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import json
import logging
from collections import namedtuple

from nlm_ingestor.ingestor.visual_ingestor import block_renderer
from nlm_ingestor.ingestor_utils import utils
from nlm_ingestor.ingestor_utils.ing_named_tuples import LineStyle
from nlm_ingestor.ingestor_utils.utils import NpEncoder

from . import processors


class TextIngestor:
    def __init__(self, doc_location, parse_options):
        self.logger = logging.getLogger(self.__class__.__name__)
        self.logger.setLevel(logging.INFO)
        render_format = (
            parse_options.get("render_format", "all") if parse_options else "all"
        )

        with open(doc_location) as f:
            raw_lines = f.readlines()

        blocks, _block_texts, _sents, _file_data, result, page_dim, num_pages = (
            parse_blocks(raw_lines=raw_lines)
        )
        self.blocks = blocks
        self.line_style_classes = {}
        self.class_levels = {}
        self.add_styles()

        return_dict = {
            "page_dim": page_dim,
            "num_pages": num_pages,
        }
        if render_format == "json":
            return_dict["result"] = result[0].get("document", {})
        elif render_format == "all":
            return_dict["result"] = result[1].get("document", {})
        self.return_dict = return_dict
        br = block_renderer.BlockRenderer(self)
        self.html_str = br.render_html()
        self.json_dict = br.render_json()

    def add_styles(self):
        title_style = LineStyle(
            "Roboto, Georgia, serif",
            "bold",
            14.0,
            "500",
            "left",
            0,  # TODO: Decide what font_space_width needs to be added
            "left",
        )
        self.line_style_classes[title_style] = "nlm-text-title"
        self.class_levels["nlm-text-title"] = 0
        header_style = LineStyle(
            "Roboto, Georgia, serif",
            "normal",
            12.0,
            "600",
            "left",
            0,  # TODO: Decide what font_space_width needs to be added
            "left",
        )
        self.line_style_classes[header_style] = "nlm-text-header"
        self.class_levels["nlm-text-header"] = 1
        para_style = LineStyle(
            "Roboto, Georgia, serif",
            "normal",
            10.0,
            "400",
            "left",
            0,  # TODO: Decide what font_space_width needs to be added
            "left",
        )
        self.line_style_classes[para_style] = "nlm-text-body"
        self.class_levels["nlm-text-body"] = 2


def parse_blocks(raw_lines):

    blocks = processors.clean_lines(raw_lines)
    page_blocks = [blocks]

    blocks = blocks_to_json(page_blocks)

    blocks = [item for sublist in blocks for item in sublist]
    title = ""
    if len(blocks) > 0:
        title = blocks[0]["block_text"]
        if len(title) > 50:
            title = title[0:50] + "..."
    sents, _ = utils.blocks_to_sents(blocks)
    block_texts, _ = utils.get_block_texts(blocks)
    # this code needs a more complete rework
    doc_dict = {"blocks": blocks, "line_style_classes": {}, "class_levels": {}}
    doc = namedtuple("ObjectName", doc_dict.keys())(*doc_dict.values())
    br = block_renderer.BlockRenderer(doc)
    html_str = br.render_html()
    json_dict = br.render_json()

    result = [
        {
            "title": title,
            "text": html_str,
            "title_page_fonts": {"first_level": [title]},
        },
        {
            "title": title,
            "document": json_dict,
            "title_page_fonts": {"first_level": [title]},
        },  # JSON not enabled now.
    ]

    file_data = [json.dumps(res, cls=NpEncoder) for res in result]

    return blocks, block_texts, sents, file_data, result, [1, 1], 0


def blocks_to_json(page_blocks):
    results = []
    block_count = 0
    for page_idx, blocks in enumerate(page_blocks):
        result = []
        block_start = block_count
        header_block_idx = -1
        header_block_text = ""
        for block_idx_in_page, block in enumerate(blocks):
            if block["block_text"]:
                block_sents = utils.sent_tokenize(block["block_text"])
                # header_block_idx = block["header_block_idx"]
                if block["block_type"] == "header":
                    header_block_idx = block["block_idx"]
                    header_block_text = block["block_text"]

                result.append(
                    {
                        "block_text": block["block_text"],
                        "block_idx": block["block_idx"],
                        "block_sents": block_sents,
                        "block_type": block["block_type"],
                        "header_block_idx": block_start + header_block_idx,
                        "page_idx": page_idx,
                        "block_idx_in_page": block_start + block_idx_in_page,
                        "header_text": header_block_text,
                        "text_group_start_idx": block["text_group_start_idx"],
                        "block_list": block["block_list"],
                        "level": 0,
                        "block_class": (
                            block["block_class"] if "block_class" in block else {}
                        ),
                    },
                )
                block_count += 1
        results.append(result)
    return results