diff --git a/docs/odk-workflows/RepositoryFileStructure.md b/docs/odk-workflows/RepositoryFileStructure.md index c4c4d23..681030e 100644 --- a/docs/odk-workflows/RepositoryFileStructure.md +++ b/docs/odk-workflows/RepositoryFileStructure.md @@ -19,10 +19,7 @@ These are the current imports in NMRCV | bfo | http://purl.obolibrary.org/obo/bfo.owl | mirror | | ro | http://purl.obolibrary.org/obo/ro.owl | None | | omo | http://purl.obolibrary.org/obo/omo.owl | mirror | -| iao | http://purl.obolibrary.org/obo/iao.owl | None | -| chmo | http://purl.obolibrary.org/obo/chmo.owl | None | -| pato | http://purl.obolibrary.org/obo/pato.owl | None | -| obi | http://purl.obolibrary.org/obo/obi.owl | None | +| chebi | http://purl.obolibrary.org/obo/chebi.owl | None | ## Components Components, in contrast to imports, are considered full members of the ontology. This means that any axiom in a component is also included in the ontology base - which means it is considered _native_ to the ontology. While this sounds complicated, consider this: conceptually, no component should be part of more than one ontology. If that seems to be the case, we are most likely talking about an import. Components are often not needed for ontologies, but there are some use cases: diff --git a/src/ontology/Makefile b/src/ontology/Makefile index 1ccf3a6..86dfa09 100644 --- a/src/ontology/Makefile +++ b/src/ontology/Makefile @@ -10,7 +10,7 @@ # More information: https://github.com/INCATools/ontology-development-kit/ # Fingerprint of the configuration file when this Makefile was last generated -CONFIG_HASH= 048e86b877413691096fdaf760046bfa1f9cc76be28e57b283a8dd03e21e3213 +CONFIG_HASH= a4c0ac9d9d7ac7b03403ce94c3d1d76c44d412b433490d312ed763a12e8e19f6 # ---------------------------------------- @@ -159,7 +159,7 @@ all_main: $(MAIN_FILES) # ---------------------------------------- -IMPORTS = bfo ro omo iao chmo pato obi +IMPORTS = bfo ro omo chebi IMPORT_ROOTS = $(patsubst %, $(IMPORTDIR)/%_import, $(IMPORTS)) IMPORT_OWL_FILES = $(foreach n,$(IMPORT_ROOTS), $(n).owl) @@ -376,6 +376,13 @@ $(IMPORTDIR)/omo_import.owl: $(MIRRORDIR)/omo.owl $(IMPORTDIR)/omo_terms_combine if [ $(IMP) = true ]; then $(ROBOT) merge -i $< query --update ../sparql/preprocess-module.ru --update ../sparql/inject-subset-declaration.ru --update ../sparql/inject-synonymtype-declaration.ru --update ../sparql/postprocess-module.ru \ $(ANNOTATE_CONVERT_FILE); fi +## Module for ontology: chebi + +$(IMPORTDIR)/chebi_import.owl: $(MIRRORDIR)/chebi.owl $(IMPORTDIR)/chebi_terms_combined.txt + if [ $(IMP) = true ] && [ $(IMP_LARGE) = true ]; then $(ROBOT) extract -i $< -T $(IMPORTDIR)/chebi_terms_combined.txt --force true --copy-ontology-annotations true --individuals include --method BOT \ + query --update ../sparql/inject-subset-declaration.ru --update ../sparql/inject-synonymtype-declaration.ru --update ../sparql/postprocess-module.ru \ + $(ANNOTATE_CONVERT_FILE); fi + .PHONY: refresh-imports refresh-imports: @@ -432,36 +439,17 @@ mirror-omo: | $(TMPDIR) $(ROBOT) convert -i $(TMPDIR)/omo-download.owl -o $(TMPDIR)/$@.owl -## ONTOLOGY: iao -.PHONY: mirror-iao -.PRECIOUS: $(MIRRORDIR)/iao.owl -mirror-iao: | $(TMPDIR) - curl -L $(OBOBASE)/iao.owl --create-dirs -o $(TMPDIR)/iao-download.owl --retry 4 --max-time 200 && \ - $(ROBOT) convert -i $(TMPDIR)/iao-download.owl -o $(TMPDIR)/$@.owl - - -## ONTOLOGY: chmo -.PHONY: mirror-chmo -.PRECIOUS: $(MIRRORDIR)/chmo.owl -mirror-chmo: | $(TMPDIR) - curl -L $(OBOBASE)/chmo.owl --create-dirs -o $(TMPDIR)/chmo-download.owl --retry 4 --max-time 200 && \ - $(ROBOT) convert -i $(TMPDIR)/chmo-download.owl -o $(TMPDIR)/$@.owl - - -## ONTOLOGY: pato -.PHONY: mirror-pato -.PRECIOUS: $(MIRRORDIR)/pato.owl -mirror-pato: | $(TMPDIR) - curl -L $(OBOBASE)/pato.owl --create-dirs -o $(TMPDIR)/pato-download.owl --retry 4 --max-time 200 && \ - $(ROBOT) convert -i $(TMPDIR)/pato-download.owl -o $(TMPDIR)/$@.owl - - -## ONTOLOGY: obi -.PHONY: mirror-obi -.PRECIOUS: $(MIRRORDIR)/obi.owl -mirror-obi: | $(TMPDIR) - curl -L $(OBOBASE)/obi.owl --create-dirs -o $(TMPDIR)/obi-download.owl --retry 4 --max-time 200 && \ - $(ROBOT) convert -i $(TMPDIR)/obi-download.owl -o $(TMPDIR)/$@.owl +## ONTOLOGY: chebi +.PHONY: mirror-chebi +.PRECIOUS: $(MIRRORDIR)/chebi.owl +ifeq ($(strip $(IMP_LARGE)),true) +mirror-chebi: | $(TMPDIR) + curl -L $(OBOBASE)/chebi.owl.gz --create-dirs -o $(MIRRORDIR)/chebi.owl.gz --retry 4 --max-time 200 && \ + $(ROBOT) convert -i $(MIRRORDIR)/chebi.owl.gz -o $(TMPDIR)/$@.owl +else +mirror-chebi: + @echo "Not refreshing chebi because refreshing large imports is disabled (IMP_LARGE=$(IMP_LARGE))." +endif $(MIRRORDIR)/%.owl: mirror-% | $(MIRRORDIR) diff --git a/src/ontology/catalog-v001.xml b/src/ontology/catalog-v001.xml index c23e0e0..c30f804 100644 --- a/src/ontology/catalog-v001.xml +++ b/src/ontology/catalog-v001.xml @@ -2,31 +2,10 @@ - - - - - - - - - - - - - - - - - - - - - - + \ No newline at end of file diff --git a/src/ontology/imports/chebi_import.owl b/src/ontology/imports/chebi_import.owl new file mode 100644 index 0000000..249eaba --- /dev/null +++ b/src/ontology/imports/chebi_import.owl @@ -0,0 +1,12111 @@ +Prefix(:=) +Prefix(owl:=) +Prefix(rdf:=) +Prefix(xml:=) +Prefix(xsd:=) +Prefix(rdfs:=) + + +Ontology( + +Annotation(owl:versionInfo "2024-03-18") + +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) 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+Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(ObjectProperty()) +Declaration(ObjectProperty()) +Declaration(ObjectProperty()) +Declaration(ObjectProperty()) +Declaration(ObjectProperty()) +Declaration(ObjectProperty()) +Declaration(ObjectProperty()) +Declaration(ObjectProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty(rdfs:label)) +############################ +# Annotation Properties +############################ + +# Annotation Property: (definition) + +AnnotationAssertion(rdfs:label "definition") + +# Annotation Property: () + +SubAnnotationPropertyOf( ) + +# Annotation Property: () + +SubAnnotationPropertyOf( ) + +# Annotation Property: () + +SubAnnotationPropertyOf( ) + +# Annotation Property: () + +SubAnnotationPropertyOf( ) + +# Annotation Property: () + +SubAnnotationPropertyOf( ) + +# Annotation Property: (database_cross_reference) + +AnnotationAssertion(rdfs:label "database_cross_reference") + +# Annotation Property: (has_exact_synonym) + +AnnotationAssertion(rdfs:label "has_exact_synonym") + +# Annotation Property: (has_obo_format_version) + +AnnotationAssertion(rdfs:label "has_obo_format_version") + +# Annotation Property: (has_obo_namespace) + +AnnotationAssertion(rdfs:label "has_obo_namespace") + + +############################ +# Object Properties +############################ + +# Object Property: (has part) + +AnnotationAssertion( "BFO:0000051") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "has_part") +AnnotationAssertion( "false"^^xsd:boolean) +AnnotationAssertion( "has_part") +AnnotationAssertion(rdfs:label "has part") +TransitiveObjectProperty() + +# Object Property: (has role) + +AnnotationAssertion( "RO:0000087") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "has_role") +AnnotationAssertion( "false"^^xsd:boolean) +AnnotationAssertion( "false"^^xsd:boolean) +AnnotationAssertion( "has_role") +AnnotationAssertion(rdfs:label "has role") + +# Object Property: (has functional parent) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "has_functional_parent") +AnnotationAssertion( "false"^^xsd:boolean) +AnnotationAssertion( "false"^^xsd:boolean) +AnnotationAssertion(rdfs:label "has functional parent") + +# Object Property: (has parent hydride) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "has_parent_hydride") +AnnotationAssertion( "false"^^xsd:boolean) +AnnotationAssertion( "false"^^xsd:boolean) +AnnotationAssertion(rdfs:label "has parent hydride") + +# Object Property: (is conjugate acid of) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "is_conjugate_acid_of") +AnnotationAssertion( "true"^^xsd:boolean) +AnnotationAssertion( "false"^^xsd:boolean) +AnnotationAssertion(rdfs:label "is conjugate acid of") +InverseObjectProperties( ) + +# Object Property: (is conjugate base of) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "is_conjugate_base_of") +AnnotationAssertion( "true"^^xsd:boolean) +AnnotationAssertion( "false"^^xsd:boolean) +AnnotationAssertion(rdfs:label "is conjugate base of") + +# Object Property: (is substituent group from) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "is_substituent_group_from") +AnnotationAssertion( "false"^^xsd:boolean) +AnnotationAssertion( "false"^^xsd:boolean) +AnnotationAssertion(rdfs:label "is substituent group from") + +# Object Property: (is tautomer of) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "is_tautomer_of") +AnnotationAssertion( "true"^^xsd:boolean) +AnnotationAssertion(rdfs:label "is tautomer of") +TransitiveObjectProperty() + + + +############################ +# Classes +############################ + +# Class: (electron) + +AnnotationAssertion( "Elementary particle not affected by the strong force having a spin 1/2, a negative elementary charge and a rest mass of 0.000548579903(13) u, or 0.51099906(15) MeV.") +AnnotationAssertion( "-1") +AnnotationAssertion( "0.000548579903") +AnnotationAssertion( "0.0") +AnnotationAssertion( "KEGG:C05359") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:21614077") +AnnotationAssertion( "Wikipedia:Electron") +AnnotationAssertion(Annotation( "ChEBI") "electron") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "electron") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "electron") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Elektron") +AnnotationAssertion(Annotation( "IUPAC") "beta") +AnnotationAssertion(Annotation( "ChEBI") "beta(-)") +AnnotationAssertion(Annotation( "IUPAC") "beta-particle") +AnnotationAssertion(Annotation( "IUPAC") "e") +AnnotationAssertion(Annotation( "UniProt") "e(-)") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "e-") +AnnotationAssertion(Annotation( "IUPAC") "negatron") +AnnotationAssertion( "CHEBI:10545") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "electron") +SubClassOf( ) + +# Class: (primary nitroalkane) + +AnnotationAssertion( "A nitroalkane in which the nitro group is attached to a terminal carbon. Major microspecies at pH 7.3.") +AnnotationAssertion( "0") +AnnotationAssertion( "CH2NO2R") +AnnotationAssertion( "60.032") +AnnotationAssertion( "60.00855") +AnnotationAssertion( "C([N+]([O-])=O)*") +AnnotationAssertion(Annotation( "SUBMITTER") "MetaCyc:Nitroalkanes") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:1710166") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:26506056") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:7762004") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "UniProt") "a primary nitroalkane") +AnnotationAssertion( "CHEBI:133972") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "primary nitroalkane") +SubClassOf( ) + +# Class: (chlorofluorocarbon) + +AnnotationAssertion( "An organochlorine compound derived from methane, ethane or propane that contains atoms of carbon, chlorine, and fluorine only. They are nontoxic, nonflammable chemicals used in aerosol sprays and as refrigerants. Being ozone depletion agents, their manufacture and use is being phased out under the Montreal Protocol.") +AnnotationAssertion( "Wikipedia:Chlorofluorocarbon") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "CFC") +AnnotationAssertion(Annotation( "ChEBI") "CFCs") +AnnotationAssertion(Annotation( "ChEBI") "chlorofluorocarbons") +AnnotationAssertion( "CHEBI:134024") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chlorofluorocarbon") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (perfluorinated compound) + +AnnotationAssertion( "An organofluorine compound containing only C-F bonds (no C-H bonds) and C-C bonds but also other heteroatoms (particularly other halogens, oxygen, and sulfur). Their properties represent a blend of fluorocarbons (containing only C-F and C-C bonds) and the parent functionalised organic species.") +AnnotationAssertion( "Wikipedia:Perfluorinated_compound") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "PFC") +AnnotationAssertion(Annotation( "ChEBI") "PFCs") +AnnotationAssertion(Annotation( "ChEBI") "perfluorinated compounds") +AnnotationAssertion( "CHEBI:134091") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "perfluorinated compound") +SubClassOf( ) + +# Class: (volatile organic compound) + +AnnotationAssertion( "Any organic compound having an initial boiling point less than or equal to 250 degreeC (482 degreeF) measured at a standard atmospheric pressure of 101.3 kPa.") +AnnotationAssertion( "Wikipedia:Volatile_organic_compound") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "VOC") +AnnotationAssertion(Annotation( "ChEBI") "VOCs") +AnnotationAssertion(Annotation( "ChEBI") "volatile organic compounds") +AnnotationAssertion( "CHEBI:134179") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "volatile organic compound") +SubClassOf( ) + +# Class: (aci-nitro compound) + +AnnotationAssertion( "Organonitrogen compounds that have the general structure R(1)(R(2))C=N(O)OH (R(1),R(2) = H, organyl). They are tautomers of C-nitro compounds.") +AnnotationAssertion( "0") +AnnotationAssertion( "CHNO2R2") +AnnotationAssertion( "59.024") +AnnotationAssertion( "59.00073") +AnnotationAssertion( "C(*)(=[N+](O)[O-])*") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "aci-nitro compounds") +AnnotationAssertion(Annotation( "ChEBI") "oxime N-oxide") +AnnotationAssertion(Annotation( "ChEBI") "oxime N-oxides") +AnnotationAssertion( "CHEBI:136622") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "aci-nitro compound") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (secondary ammonium ion) + +AnnotationAssertion( "An organic cation obtained by protonation of any secondary amino compound; major species at pH 7.3.") +AnnotationAssertion( "+1") +AnnotationAssertion( "H2NR2") +AnnotationAssertion( "16.023") +AnnotationAssertion( "16.01872") +AnnotationAssertion( "*[NH+](*)[H]") +AnnotationAssertion( "MetaCyc:Secondary-Amines") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "UniProt") "a secondary amine") +AnnotationAssertion(Annotation( "ChEBI") "secondary amine(1+)") +AnnotationAssertion( "CHEBI:137419") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "secondary ammonium ion") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (metalloid atom) + +AnnotationAssertion( "An atom of an element that exhibits properties that are between those of metals and nonmetals, or that has a mixture of them. The term generally includes boron, silicon, germanium, arsenic, antimony, and tellurium, while carbon, aluminium, selenium, polonium, and astatine are less commonly included.") +AnnotationAssertion( "Wikipedia:Metalloid") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "metalloid") +AnnotationAssertion(Annotation( "ChEBI") "metalloids") +AnnotationAssertion( "CHEBI:137980") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "metalloid atom") +SubClassOf( ) + +# Class: (inorganic acid) + +AnnotationAssertion( "A Bronsted acid derived from one or more inorganic compounds. Inorganic acids (also known as mineral acids) form hydrons and conjugate base ions when dissolved in water.") +AnnotationAssertion( "Wikipedia:Mineral_acid") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "inorganic acids") +AnnotationAssertion(Annotation( "ChEBI") "mineral acid") +AnnotationAssertion(Annotation( "ChEBI") "mineral acids") +AnnotationAssertion( "CHEBI:138103") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "inorganic acid") +SubClassOf( ) + +# Class: (gas molecular entity) + +AnnotationAssertion( "Any main group molecular entity that is gaseous at standard temperature and pressure (STP; 0degreeC and 100 kPa).") +AnnotationAssertion( "Wikipedia:https://en.wikipedia.org/wiki/Gas") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "gas molecular entities") +AnnotationAssertion(Annotation( "ChEBI") "gaseous molecular entities") +AnnotationAssertion(Annotation( "ChEBI") "gaseous molecular entity") +AnnotationAssertion( "CHEBI:138675") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "gas molecular entity") +SubClassOf( ) + +# Class: (isotopically modified compound) + +AnnotationAssertion( "Any molecular entity in which the isotopic ratio of nuclides for at least one element deviates measurably from that occurring in nature. The term includes both isotopically substituted compounds (in which essentially all the molecules of the compound have only the indicated nuclide(s) at each designated position) and isotopically labeled compounds (a formal mixture of an isotopically unmodified compound with one or more analogous isotopically substituted compound(s).") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "isotopically modified compounds") +AnnotationAssertion( "CHEBI:139358") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "isotopically modified compound") +SubClassOf( ) + +# Class: (carbamate) + +AnnotationAssertion( "-1") +AnnotationAssertion( "CH2NO2") +AnnotationAssertion( "InChI=1S/CH3NO2/c2-1(3)4/h2H2,(H,3,4)/p-1") +AnnotationAssertion( "KXDHJXZQYSOELW-UHFFFAOYSA-M") +AnnotationAssertion( "60.03212") +AnnotationAssertion( "60.00910") +AnnotationAssertion( "NC([O-])=O") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3903503") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:302-11-4") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:239604") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "carbamate") +AnnotationAssertion(Annotation( "UniProt") "carbamate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Carbamat") +AnnotationAssertion(Annotation( "ChEBI") "Karbamat") +AnnotationAssertion(Annotation( "ChemIDplus") "carbamate ion") +AnnotationAssertion(Annotation( "ChemIDplus") "carbamic acid, ion(1-)") +AnnotationAssertion( "CHEBI:13941") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "carbamate") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (oxime anion) + +AnnotationAssertion( "A organic ion resulting from the deprotonation of the hydroxy group of any oxime.") +AnnotationAssertion( "-1") +AnnotationAssertion( "CNO") +AnnotationAssertion( "42.017") +AnnotationAssertion( "41.99799") +AnnotationAssertion( "C(*)(=N[O-])*") +AnnotationAssertion(Annotation( "ChEBI") "oxime anion") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "oximate") +AnnotationAssertion(Annotation( "ChEBI") "oximates") +AnnotationAssertion(Annotation( "ChEBI") "oxime anions") +AnnotationAssertion( "CHEBI:142513") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oxime anion") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (acceptor) + +AnnotationAssertion( "A molecular entity that can accept an electron, a pair of electrons, an atom or a group from another molecular entity.") +AnnotationAssertion( "CHEBI:13699") +AnnotationAssertion( "CHEBI:2377") +AnnotationAssertion( "KEGG:C00028") +AnnotationAssertion( "KEGG:C16722") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Acceptor") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "A") +AnnotationAssertion(Annotation( "ChEBI") "Akzeptor") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Hydrogen-acceptor") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Oxidized donor") +AnnotationAssertion(Annotation( "ChEBI") "accepteur") +AnnotationAssertion( "CHEBI:15339") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "acceptor") +SubClassOf( ) + +# Class: (acetic acid) + +AnnotationAssertion( "A simple monocarboxylic acid containing two carbons.") +AnnotationAssertion( "0") +AnnotationAssertion( "C2H4O2") +AnnotationAssertion( "InChI=1S/C2H4O2/c1-2(3)4/h1H3,(H,3,4)") +AnnotationAssertion( "QTBSBXVTEAMEQO-UHFFFAOYSA-N") +AnnotationAssertion( "60.05200") +AnnotationAssertion( "60.02113") +AnnotationAssertion( "CC(O)=O") +AnnotationAssertion( "CHEBI:22169") +AnnotationAssertion( "CHEBI:2387") +AnnotationAssertion( "CHEBI:40486") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:506007") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:64-19-7") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:64-19-7") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:64-19-7") +AnnotationAssertion(Annotation( "DrugCentral") "Drug_Central:4211") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1380") +AnnotationAssertion( "HMDB:HMDB0000042") +AnnotationAssertion( "KEGG:C00033") +AnnotationAssertion( "KEGG:D00010") +AnnotationAssertion( "KNApSAcK:C00001176") +AnnotationAssertion(Annotation( "LIPID MAPS") "LIPID_MAPS_instance:LMFA01010002") +AnnotationAssertion( "MetaCyc:ACET") +AnnotationAssertion( "PDBeChem:ACT") +AnnotationAssertion( "PDBeChem:ACY") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:12005138") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:15107950") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16630552") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16774200") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17190852") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:19416101") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:19469536") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22153255") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22173419") +AnnotationAssertion( "PPDB:1333") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:506007") +AnnotationAssertion( "Wikipedia:Acetic_acid") +AnnotationAssertion(Annotation( "PDBeChem") "ACETIC ACID") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Acetic acid") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "acetic acid") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "AcOH") +AnnotationAssertion(Annotation( "IUPAC") "CH3-COOH") +AnnotationAssertion(Annotation( "ChEBI") "CH3CO2H") +AnnotationAssertion(Annotation( "ChEBI") "E 260") +AnnotationAssertion(Annotation( "ChEBI") "E-260") +AnnotationAssertion(Annotation( "ChEBI") "E260") +AnnotationAssertion(Annotation( "ChEBI") "Essigsaeure") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Ethanoic acid") +AnnotationAssertion(Annotation( "ChemIDplus") "Ethylic acid") +AnnotationAssertion(Annotation( "ChEBI") "HOAc") +AnnotationAssertion(Annotation( "ChEBI") "INS No. 260") +AnnotationAssertion(Annotation( "ChEBI") "MeCO2H") +AnnotationAssertion(Annotation( "ChEBI") "MeCOOH") +AnnotationAssertion(Annotation( "ChemIDplus") "Methanecarboxylic acid") +AnnotationAssertion(Annotation( "ChemIDplus") "acide acetique") +AnnotationAssertion(Annotation( "ChEBI") "ethoic acid") +AnnotationAssertion( "CHEBI:15366") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "acetic acid") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (water) + +AnnotationAssertion( "An oxygen hydride consisting of an oxygen atom that is covalently bonded to two hydrogen atoms") +AnnotationAssertion( "0") +AnnotationAssertion( "H2O") +AnnotationAssertion( "InChI=1S/H2O/h1H2") +AnnotationAssertion( "XLYOFNOQVPJJNP-UHFFFAOYSA-N") +AnnotationAssertion( "18.01530") +AnnotationAssertion( "18.01056") +AnnotationAssertion( "[H]O[H]") +AnnotationAssertion( "CHEBI:10743") +AnnotationAssertion( "CHEBI:13352") +AnnotationAssertion( "CHEBI:27313") +AnnotationAssertion( "CHEBI:42043") +AnnotationAssertion( "CHEBI:42857") +AnnotationAssertion( "CHEBI:43228") +AnnotationAssertion( "CHEBI:44292") +AnnotationAssertion( "CHEBI:44701") +AnnotationAssertion( "CHEBI:44819") +AnnotationAssertion( "CHEBI:5585") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3587155") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7732-18-5") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:7732-18-5") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7732-18-5") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:117") +AnnotationAssertion( "HMDB:HMDB0002111") +AnnotationAssertion( "KEGG:C00001") +AnnotationAssertion( "KEGG:D00001") +AnnotationAssertion( "MetaCyc:WATER") +AnnotationAssertion( "MolBase:1") +AnnotationAssertion( "PDBeChem:HOH") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:3587155") +AnnotationAssertion( "Wikipedia:Water") +AnnotationAssertion(Annotation( "PDBeChem") "WATER") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Water") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "oxidane") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "water") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "PDBeChem") "BOUND WATER") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "H2O") +AnnotationAssertion(Annotation( "UniProt") "H2O") +AnnotationAssertion(Annotation( "ChEBI") "HOH") +AnnotationAssertion(Annotation( "ChEBI") "Wasser") +AnnotationAssertion(Annotation( "IUPAC") "[OH2]") +AnnotationAssertion(Annotation( "ChEBI") "acqua") +AnnotationAssertion(Annotation( "ChEBI") "agua") +AnnotationAssertion(Annotation( "ChEBI") "aqua") +AnnotationAssertion(Annotation( "IUPAC") "dihydridooxygen") +AnnotationAssertion(Annotation( "IUPAC") "dihydrogen oxide") +AnnotationAssertion(Annotation( "ChEBI") "eau") +AnnotationAssertion(Annotation( "ChEBI") "hydrogen hydroxide") +AnnotationAssertion( "CHEBI:15377") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "water") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (methanol-d4) + +AnnotationAssertion( "A deuterated compound that is methanol in which all four hydrogen atoms are replaced by deuterium. It is commonly used as a solvent in NMR spectroscopy.") +AnnotationAssertion( "0") +AnnotationAssertion( "CD4O") +AnnotationAssertion( "InChI=1S/CH4O/c1-2/h2H,1H3/i1D3,2D") +AnnotationAssertion( "OKKJLVBELUTLKV-MZCSYVLQSA-N") +AnnotationAssertion( "36.066") +AnnotationAssertion( "36.05132") +AnnotationAssertion( "[2H]OC([2H])([2H])[2H]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:811-98-3") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:811-98-3") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:19680377") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22819978") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:28219117") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:31837670") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1733278") +AnnotationAssertion( "Wikipedia:Deuterated_methanol") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "((2)H3)methan((2)H)ol") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChemIDplus") "((2)H4)methanol") +AnnotationAssertion(Annotation( "ChEBI") "CD3OD") +AnnotationAssertion(Annotation( "ChemIDplus") "methan-d3-ol-d") +AnnotationAssertion(Annotation( "ChEBI") "methyl alcohol-d4") +AnnotationAssertion(Annotation( "ChEBI") "methyl-d3 alcohol d") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "tetradeuteromethanol") +AnnotationAssertion(Annotation( "ChEBI") "trideuterio deuteriooxy methane") +AnnotationAssertion( "CHEBI:156265") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "methanol-d4") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (primary alcohol) + +AnnotationAssertion( "A primary alcohol is a compound in which a hydroxy group, -OH, is attached to a saturated carbon atom which has either three hydrogen atoms attached to it or only one other carbon atom and two hydrogen atoms attached to it.") +AnnotationAssertion( "0") +AnnotationAssertion( "CH3OR") +AnnotationAssertion( "31.034") +AnnotationAssertion( "31.01839") +AnnotationAssertion( "*C(O)([H])[H]") +AnnotationAssertion( "CHEBI:13676") +AnnotationAssertion( "CHEBI:14887") +AnnotationAssertion( "CHEBI:26262") +AnnotationAssertion( "CHEBI:57489") +AnnotationAssertion( "CHEBI:8406") +AnnotationAssertion( "KEGG:C00226") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Primary alcohol") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "1-Alcohol") +AnnotationAssertion(Annotation( "UniProt") "a primary alcohol") +AnnotationAssertion(Annotation( "ChEBI") "primary alcohols") +AnnotationAssertion( "CHEBI:15734") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "primary alcohol") +SubClassOf( ) + +# Class: (bromide) + +AnnotationAssertion( "-1") +AnnotationAssertion( "Br") +AnnotationAssertion( "InChI=1S/BrH/h1H/p-1") +AnnotationAssertion( "CPELXLSAUQHCOX-UHFFFAOYSA-M") +AnnotationAssertion( "79.90400") +AnnotationAssertion( "78.91889") +AnnotationAssertion( "[Br-]") +AnnotationAssertion( "CHEBI:13918") +AnnotationAssertion( "CHEBI:3178") +AnnotationAssertion( "CHEBI:49515") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3587179") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:24959-67-9") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:24959-67-9") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:24959-67-9") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:14908") +AnnotationAssertion( "KEGG:C00720") +AnnotationAssertion( "KEGG:C01324") +AnnotationAssertion( "PDBeChem:BR") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Bromide") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "bromide") +AnnotationAssertion(Annotation( "UniProt") "bromide") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "bromide(1-)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "PDBeChem") "BROMIDE ION") +AnnotationAssertion(Annotation( "IUPAC") "Br(-)") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Br-") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "bromine anion") +AnnotationAssertion( "CHEBI:15858") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "bromide") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (halide anion) + +AnnotationAssertion( "A monoatomic monoanion resulting from the addition of an electron to any halogen atom.") +AnnotationAssertion( "-1") +AnnotationAssertion( "X") +AnnotationAssertion( "0.0") +AnnotationAssertion( "0.0") +AnnotationAssertion( "[*-]") +AnnotationAssertion( "CHEBI:14384") +AnnotationAssertion( "CHEBI:5605") +AnnotationAssertion( "KEGG:C00462") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "halide ions") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "HX") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Halide") +AnnotationAssertion(Annotation( "UniProt") "a halide anion") +AnnotationAssertion(Annotation( "ChEBI") "halide anions") +AnnotationAssertion(Annotation( "ChEBI") "halide(1-)") +AnnotationAssertion(Annotation( "ChEBI") "halides") +AnnotationAssertion(Annotation( "ChEBI") "halogen anion") +AnnotationAssertion( "CHEBI:16042") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "halide anion") +SubClassOf( ) +SubClassOf( ) + +# Class: (ammonia) + +AnnotationAssertion( "An azane that consists of a single nitrogen atom covelently bonded to three hydrogen atoms.") +AnnotationAssertion( "0") +AnnotationAssertion( "H3N") +AnnotationAssertion( "InChI=1S/H3N/h1H3") +AnnotationAssertion( "QGZKDVFQNNGYKY-UHFFFAOYSA-N") +AnnotationAssertion( "17.03056") +AnnotationAssertion( "17.02655") +AnnotationAssertion( "[H]N([H])[H]") +AnnotationAssertion( "CHEBI:13405") +AnnotationAssertion( "CHEBI:13406") +AnnotationAssertion( "CHEBI:13407") +AnnotationAssertion( "CHEBI:13771") +AnnotationAssertion( "CHEBI:22533") +AnnotationAssertion( "CHEBI:44269") +AnnotationAssertion( "CHEBI:44284") +AnnotationAssertion( "CHEBI:44404") +AnnotationAssertion( "CHEBI:7434") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3587154") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7664-41-7") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:7664-41-7") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7664-41-7") +AnnotationAssertion(Annotation( "DrugCentral") "Drug_Central:4625") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:79") +AnnotationAssertion( "HMDB:HMDB0000051") +AnnotationAssertion( "KEGG:C00014") +AnnotationAssertion( "KEGG:D02916") +AnnotationAssertion( "KNApSAcK:C00007267") +AnnotationAssertion( "MetaCyc:AMMONIA") +AnnotationAssertion( "MolBase:930") +AnnotationAssertion( "PDBeChem:NH3") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:110589") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:11139349") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:11540049") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:11746427") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:11783653") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:13753780") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:14663195") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:15092448") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:15094021") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:15554424") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:15969015") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16008360") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16050680") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16348008") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16349403") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16614889") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16664306") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16842901") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17025297") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17439666") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17569513") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17737668") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:18670398") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22002069") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22081570") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22088435") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22100291") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22130175") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22150211") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22240068") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22290316") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22342082") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22385337") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22443779") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22560242") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:3587154") +AnnotationAssertion( "Wikipedia:Ammonia") +AnnotationAssertion(Annotation( "PDBeChem") "AMMONIA") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Ammonia") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "ammonia") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "azane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChemIDplus") "Ammoniak") +AnnotationAssertion(Annotation( "IUPAC") "NH3") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "NH3") +AnnotationAssertion(Annotation( "UniProt") "NH3") +AnnotationAssertion(Annotation( "ChEBI") "R-717") +AnnotationAssertion(Annotation( "MolBase") "[NH3]") +AnnotationAssertion(Annotation( "ChEBI") "ammoniac") +AnnotationAssertion(Annotation( "ChEBI") "amoniaco") +AnnotationAssertion(Annotation( "ChemIDplus") "spirit of hartshorn") +AnnotationAssertion( "CHEBI:16134") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ammonia") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (methane) + +AnnotationAssertion( "A one-carbon compound in which the carbon is attached by single bonds to four hydrogen atoms. It is a colourless, odourless, non-toxic but flammable gas (b.p. -161degreeC).") +AnnotationAssertion( "0") +AnnotationAssertion( "CH4") +AnnotationAssertion( "InChI=1S/CH4/h1H4") +AnnotationAssertion( "VNWKTOKETHGBQD-UHFFFAOYSA-N") +AnnotationAssertion( "16.04246") +AnnotationAssertion( "16.03130") +AnnotationAssertion( "[H]C([H])([H])[H]") +AnnotationAssertion( "CHEBI:14585") +AnnotationAssertion( "CHEBI:25220") +AnnotationAssertion( "CHEBI:6811") +AnnotationAssertion(Annotation( "ChemIDplus") "Beilstein:1718732") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:74-82-8") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:74-82-8") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:74-82-8") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:59") +AnnotationAssertion( "HMDB:HMDB0002714") +AnnotationAssertion( "KEGG:C01438") +AnnotationAssertion( "MetaCyc:CH4") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17791569") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:23104415") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:23353606") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:23376302") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:23397538") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:23718889") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:23739479") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:23742231") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:23756351") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24132456") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24161402") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24259373") +AnnotationAssertion( "Patent:FR994032") +AnnotationAssertion( "Patent:US2583090") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1718732") +AnnotationAssertion(Annotation( "UM-BBD") "UM-BBD_compID:c0095") +AnnotationAssertion( "Wikipedia:Methane") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Methane") +AnnotationAssertion(Annotation( "ChEBI") "methane") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "methane") +AnnotationAssertion(Annotation( "UniProt") "methane") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "tetrahydridocarbon") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "CH4") +AnnotationAssertion(Annotation( "ChEBI") "Methan") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "marsh gas") +AnnotationAssertion(Annotation( "ChEBI") "metano") +AnnotationAssertion(Annotation( "ChemIDplus") "methyl hydride") +AnnotationAssertion( "CHEBI:16183") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "methane") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (pyridine) + +AnnotationAssertion( "An azaarene comprising a benzene core in which one -CH group is replaced by a nitrogen atom. It is the parent compound of the class pyridines.") +AnnotationAssertion( "0") +AnnotationAssertion( "C5H5N") +AnnotationAssertion( "InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H") +AnnotationAssertion( "JUJWROOIHBZHMG-UHFFFAOYSA-N") +AnnotationAssertion( "79.09990") +AnnotationAssertion( "79.04220") +AnnotationAssertion( "c1ccncc1") +AnnotationAssertion( "CHEBI:14974") +AnnotationAssertion( "CHEBI:26415") +AnnotationAssertion( "CHEBI:8662") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:103233") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:110-86-1") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:110-86-1") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:110-86-1") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1996") +AnnotationAssertion( "HMDB:HMDB0000926") +AnnotationAssertion( "KEGG:C00747") +AnnotationAssertion( "PDBeChem:0PY") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24364496") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24425539") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:8070089") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:103233") +AnnotationAssertion( "Wikipedia:Pyridine") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Pyridine") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "pyridine") +AnnotationAssertion(Annotation( "UniProt") "pyridine") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Azabenzene") +AnnotationAssertion(Annotation( "IUPAC") "py") +AnnotationAssertion( "CHEBI:16227") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "pyridine") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (hydroxide) + +AnnotationAssertion( "-1") +AnnotationAssertion( "HO") +AnnotationAssertion( "InChI=1S/H2O/h1H2/p-1") +AnnotationAssertion( "XLYOFNOQVPJJNP-UHFFFAOYSA-M") +AnnotationAssertion( "17.00734") +AnnotationAssertion( "17.00329") +AnnotationAssertion( "[O-][H]") +AnnotationAssertion( "CHEBI:13365") +AnnotationAssertion( "CHEBI:13419") +AnnotationAssertion( "CHEBI:44641") +AnnotationAssertion( "CHEBI:5594") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:14280-30-9") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:14280-30-9") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:24714") +AnnotationAssertion( "KEGG:C01328") +AnnotationAssertion( "PDBeChem:OH") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydridooxygenate(1-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydroxide") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "oxidanide") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "HO-") +AnnotationAssertion(Annotation( "PDBeChem") "HYDROXIDE ION") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Hydroxide ion") +AnnotationAssertion(Annotation( "IUPAC") "OH(-)") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "OH-") +AnnotationAssertion( "CHEBI:16234") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydroxide") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (benzene) + +AnnotationAssertion( "A six-carbon aromatic annulene in which each carbon atom donates one of its two 2p electrons into a delocalised pi system. A toxic, flammable liquid byproduct of coal distillation, it is used as an industrial solvent. Benzene is a carcinogen that also damages bone marrow and the central nervous system.") +AnnotationAssertion( "0") +AnnotationAssertion( "C6H6") +AnnotationAssertion( "InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H") +AnnotationAssertion( "UHOVQNZJYSORNB-UHFFFAOYSA-N") +AnnotationAssertion( "78.11184") +AnnotationAssertion( "78.04695") +AnnotationAssertion( "c1ccccc1") +AnnotationAssertion( "CHEBI:13876") +AnnotationAssertion( "CHEBI:22703") +AnnotationAssertion( "CHEBI:3025") +AnnotationAssertion( "CHEBI:41187") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:969212") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:71-43-2") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:71-43-2") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:71-43-2") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1671") +AnnotationAssertion( "HMDB:HMDB0001505") +AnnotationAssertion( "KEGG:C01407") +AnnotationAssertion( "PDBeChem:BNZ") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:11684179") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:11993966") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:12857942") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:14677922") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:15468289") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:15935818") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16161967") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17373369") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:18072742") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:18407866") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:18409691") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:18836923") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:19228219") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:21325737") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:23088855") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:23222815") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:23534829") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:6353911") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:8124204") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:969212") +AnnotationAssertion(Annotation( "UM-BBD") "UM-BBD_compID:c0142") +AnnotationAssertion( "Wikipedia:Benzene") +AnnotationAssertion(Annotation( "PDBeChem") "BENZENE") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Benzene") +AnnotationAssertion(Annotation( "ChEBI") "benzene") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "benzene") +AnnotationAssertion(Annotation( "UniProt") "benzene") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "Benzen") +AnnotationAssertion(Annotation( "UM-BBD") "Benzine") +AnnotationAssertion(Annotation( "ChemIDplus") "Benzol") +AnnotationAssertion(Annotation( "ChemIDplus") "Bicarburet of hydrogen") +AnnotationAssertion(Annotation( "ChemIDplus") "Coal naphtha") +AnnotationAssertion(Annotation( "ChemIDplus") "Mineral naphtha") +AnnotationAssertion(Annotation( "ChemIDplus") "Phene") +AnnotationAssertion(Annotation( "ChemIDplus") "Pyrobenzol") +AnnotationAssertion(Annotation( "ChemIDplus") "Pyrobenzole") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "[6]annulene") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "benzole") +AnnotationAssertion(Annotation( "UM-BBD") "cyclohexatriene") +AnnotationAssertion(Annotation( "UM-BBD") "phenyl hydride") +AnnotationAssertion( "CHEBI:16716") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "benzene") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (mineral nutrient) + +AnnotationAssertion( "A mineral that is an inorganic nutrient which must be ingested and absorbed in adequate amounts to satisfy a wide range of essential metabolic and/or structural functions in the human body.") +AnnotationAssertion( "Wikipedia:Mineral_(nutrient)") +AnnotationAssertion(Annotation( "ChEBI") "mineral nutrient") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "mineral nutrients") +AnnotationAssertion(Annotation( "ChEBI") "nutrient mineral") +AnnotationAssertion(Annotation( "ChEBI") "nutrient minerals") +AnnotationAssertion( "CHEBI:167164") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mineral nutrient") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (morpholinium) + +AnnotationAssertion( "A secondary ammonium ion that is the conjugate acid of morpholine resulting from the protonation of the NH group. Major microspecies at pH 7.3.") +AnnotationAssertion( "+1") +AnnotationAssertion( "C4H10NO") +AnnotationAssertion( "InChI=1S/C4H9NO/c1-3-6-4-2-5-1/h5H,1-4H2/p+1") +AnnotationAssertion( "YNAVUWVOSKDBBP-UHFFFAOYSA-O") +AnnotationAssertion( "88.129") +AnnotationAssertion( "88.07569") +AnnotationAssertion( "C1COCC[NH2+]1") +AnnotationAssertion( "Chemspider:4199185") +AnnotationAssertion( "MetaCyc:MORPHOLINE") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:19586072") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:25681783") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:26099357") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:26744296") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:28407378") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:28707619") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:32149213") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:32272314") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "morpholin-4-ium") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:167868") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "morpholinium") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (fluoride) + +AnnotationAssertion( "-1") +AnnotationAssertion( "F") +AnnotationAssertion( "InChI=1S/FH/h1H/p-1") +AnnotationAssertion( "KRHYYFGTRYWZRS-UHFFFAOYSA-M") +AnnotationAssertion( "18.99840") +AnnotationAssertion( "18.99895") +AnnotationAssertion( "[F-]") +AnnotationAssertion( "CHEBI:14271") +AnnotationAssertion( "CHEBI:49593") +AnnotationAssertion( "CHEBI:5113") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:16984-48-8") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:16984-48-8") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:14905") +AnnotationAssertion( "KEGG:C00742") +AnnotationAssertion( "PDBeChem:F") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Fluoride") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "fluoride") +AnnotationAssertion(Annotation( "UniProt") "fluoride") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "fluoride(1-)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "F(-)") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "F-") +AnnotationAssertion(Annotation( "PDBeChem") "FLUORIDE ION") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Fluoride ion") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "Fluorine anion") +AnnotationAssertion( "CHEBI:17051") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluoride") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (ketone) + +AnnotationAssertion( "A compound in which a carbonyl group is bonded to two carbon atoms: R2C=O (neither R may be H).") +AnnotationAssertion( "0") +AnnotationAssertion( "COR2") +AnnotationAssertion( "28.010") +AnnotationAssertion( "27.99491") +AnnotationAssertion( "[*]C([*])=O") +AnnotationAssertion( "CHEBI:13427") +AnnotationAssertion( "CHEBI:13646") +AnnotationAssertion( "CHEBI:24974") +AnnotationAssertion( "CHEBI:6127") +AnnotationAssertion( "CHEBI:8742") +AnnotationAssertion( "KEGG:C01450") +AnnotationAssertion( "Wikipedia:Ketone") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Ketone") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "ketones") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Keton") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "R-CO-R'") +AnnotationAssertion(Annotation( "UniProt") "a ketone") +AnnotationAssertion(Annotation( "ChEBI") "cetone") +AnnotationAssertion(Annotation( "ChEBI") "ketones") +AnnotationAssertion( "CHEBI:17087") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ketone") +SubClassOf( ) + +# Class: (hydrogensulfite) + +AnnotationAssertion( "-1") +AnnotationAssertion( "HO3S") +AnnotationAssertion( "InChI=1S/H2O3S/c1-4(2)3/h(H2,1,2,3)/p-1") +AnnotationAssertion( "LSNNMFCWUKXFEE-UHFFFAOYSA-M") +AnnotationAssertion( "81.07214") +AnnotationAssertion( "80.96519") +AnnotationAssertion( "OS([O-])=O") +AnnotationAssertion( "CHEBI:13367") +AnnotationAssertion( "CHEBI:5598") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:15181-46-1") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:15181-46-1") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1455") +AnnotationAssertion( "KEGG:C11481") +AnnotationAssertion( "PDBeChem:SO3") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydrogen(trioxidosulfate)(1-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydrogensulfite(1-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydrogentrioxosulfate(1-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydrogentrioxosulfate(IV)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydroxidodioxidosulfate(1-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "monohydrogentrioxosulfate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Bisulfite") +AnnotationAssertion(Annotation( "IUPAC") "HSO3(-)") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "HSO3-") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Hydrogen sulfite") +AnnotationAssertion(Annotation( "IUPAC") "[SO2(OH)](-)") +AnnotationAssertion(Annotation( "ChemIDplus") "bisulfite") +AnnotationAssertion(Annotation( "ChemIDplus") "bisulphite") +AnnotationAssertion(Annotation( "ChemIDplus") "hydrogen sulfite(1-)") +AnnotationAssertion(Annotation( "ChemIDplus") "hydrosulfite anion") +AnnotationAssertion( "CHEBI:17137") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydrogensulfite") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (propionate) + +AnnotationAssertion( "The conjugate base of propionic acid; a key precursor in lipid biosynthesis.") +AnnotationAssertion( "-1") +AnnotationAssertion( "C3H5O2") +AnnotationAssertion( "InChI=1S/C3H6O2/c1-2-3(4)5/h2H2,1H3,(H,4,5)/p-1") +AnnotationAssertion( "XBDQKXXYIPTUBI-UHFFFAOYSA-M") +AnnotationAssertion( "73.07060") +AnnotationAssertion( "73.02950") +AnnotationAssertion( "CCC([O-])=O") +AnnotationAssertion( "CHEBI:14903") +AnnotationAssertion( "CHEBI:26290") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3587503") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:72-03-7") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:72-03-7") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1820") +AnnotationAssertion( "KEGG:C00163") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17951291") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:18375549") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:2647392") +AnnotationAssertion(Annotation( "UM-BBD") "UM-BBD_compID:c0277") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "propanoate") +AnnotationAssertion(Annotation( "IUPAC") "propionate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "CH3-CH2-COO(-)") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "EtCO2 anion") +AnnotationAssertion(Annotation( "ChEBI") "carboxylatoethane") +AnnotationAssertion(Annotation( "ChEBI") "ethanecarboxylate") +AnnotationAssertion(Annotation( "ChEBI") "ethylformate") +AnnotationAssertion(Annotation( "ChEBI") "metacetonate") +AnnotationAssertion(Annotation( "ChEBI") "methylacetate") +AnnotationAssertion(Annotation( "ChEBI") "propanate") +AnnotationAssertion(Annotation( "UniProt") "propanoate") +AnnotationAssertion(Annotation( "ChemIDplus") "propanoic acid, ion(1-)") +AnnotationAssertion(Annotation( "ChEBI") "pseudoacetate") +AnnotationAssertion( "CHEBI:17272") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "propionate") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (sulfite) + +AnnotationAssertion( "A sulfur oxoanion that is the conjugate base of hydrogen sulfite (H2SO3).") +AnnotationAssertion( "-2") +AnnotationAssertion( "O3S") +AnnotationAssertion( "InChI=1S/H2O3S/c1-4(2)3/h(H2,1,2,3)/p-2") +AnnotationAssertion( "LSNNMFCWUKXFEE-UHFFFAOYSA-L") +AnnotationAssertion( "80.06420") +AnnotationAssertion( "79.95791") +AnnotationAssertion( "[O-]S([O-])=O") +AnnotationAssertion( "CHEBI:15139") +AnnotationAssertion( "CHEBI:45548") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:14265-45-3") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1449") +AnnotationAssertion( "PDBeChem:SO3") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "sulfite") +AnnotationAssertion(Annotation( "UniProt") "sulfite") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "trioxidosulfate(2-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "trioxosulfate(2-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "trioxosulfate(IV)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "SO3") +AnnotationAssertion(Annotation( "IUPAC") "SO3(2-)") +AnnotationAssertion(Annotation( "PDBeChem") "SULFITE ION") +AnnotationAssertion(Annotation( "IUPAC") "[SO3](2-)") +AnnotationAssertion(Annotation( "ChEBI") "sulphite") +AnnotationAssertion( "CHEBI:17359") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sulfite") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (cyanide) + +AnnotationAssertion( "A pseudohalide anion that is the conjugate base of hydrogen cyanide.") +AnnotationAssertion( "-1") +AnnotationAssertion( "CN") +AnnotationAssertion( "InChI=1S/CN/c1-2/q-1") +AnnotationAssertion( "XFXPMWWXUTWYJX-UHFFFAOYSA-N") +AnnotationAssertion( "26.01740") +AnnotationAssertion( "26.00362") +AnnotationAssertion( "[C-]#N") +AnnotationAssertion( "CHEBI:14038") +AnnotationAssertion( "CHEBI:3969") +AnnotationAssertion( "CHEBI:41780") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1900509") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:57-12-5") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:57-12-5") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:57-12-5") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:89") +AnnotationAssertion( "HMDB:HMDB0002084") +AnnotationAssertion( "KEGG:C00177") +AnnotationAssertion( "MetaCyc:CPD-13584") +AnnotationAssertion( "PDBeChem:CYN") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:11386635") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:14871577") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17554165") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:7839575") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1900509") +AnnotationAssertion( "Wikipedia:Cyanide") +AnnotationAssertion(Annotation( "ChEBI") "Cyanide") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Cyanide") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "cyanide") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "nitridocarbonate(1-)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "CN(-)") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "CN-") +AnnotationAssertion(Annotation( "PDBeChem") "CYANIDE ION") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Prussiate") +AnnotationAssertion(Annotation( "ChEBI") "Zyanid") +AnnotationAssertion( "CHEBI:17514") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cyanide") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (nitrate) + +AnnotationAssertion( "A nitrogen oxoanion formed by loss of a proton from nitric acid. Principal species present at pH 7.3.") +AnnotationAssertion( "-1") +AnnotationAssertion( "NO3") +AnnotationAssertion( "InChI=1S/NO3/c2-1(3)4/q-1") +AnnotationAssertion( "NHNBFGGVMKEFGY-UHFFFAOYSA-N") +AnnotationAssertion( "62.00490") +AnnotationAssertion( "61.98837") +AnnotationAssertion( "[O-][N+]([O-])=O") +AnnotationAssertion( "CHEBI:14654") +AnnotationAssertion( "CHEBI:44487") +AnnotationAssertion( "CHEBI:71263") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3587575") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:14797-55-8") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:14797-55-8") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1574") +AnnotationAssertion(Annotation( "SUBMITTER") "MetaCyc:NITRATE") +AnnotationAssertion( "PDBeChem:NO3") +AnnotationAssertion( "Wikipedia:Nitrate") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "nitrate") +AnnotationAssertion(Annotation( "UniProt") "nitrate") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "trioxidonitrate(1-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "trioxonitrate(1-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "trioxonitrate(V)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "PDBeChem") "NITRATE ION") +AnnotationAssertion(Annotation( "ChEBI") "NO3") +AnnotationAssertion(Annotation( "IUPAC") "NO3(-)") +AnnotationAssertion(Annotation( "IUPAC") "[NO3](-)") +AnnotationAssertion(Annotation( "ChemIDplus") "nitrate(1-)") +AnnotationAssertion( "CHEBI:17632") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nitrate") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (organohalogen compound) + +AnnotationAssertion( "A compound containing at least one carbon-halogen bond (where X is a halogen atom).") +AnnotationAssertion( "0") +AnnotationAssertion( "RX") +AnnotationAssertion( "**") +AnnotationAssertion( "CHEBI:13444") +AnnotationAssertion( "CHEBI:36684") +AnnotationAssertion( "CHEBI:8767") +AnnotationAssertion( "KEGG:C01322") +AnnotationAssertion( "MetaCyc:Organohalogen-Compounds") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "RX") +AnnotationAssertion(Annotation( "UniProt") "RX") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "organic halide") +AnnotationAssertion(Annotation( "ChEBI") "organic halides") +AnnotationAssertion(Annotation( "ChEBI") "organohalogen compounds") +AnnotationAssertion( "CHEBI:17792") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organohalogen compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (donor) + +AnnotationAssertion( "A molecular entity that can transfer (\"donate\") an electron, a pair of electrons, an atom or a group to another molecular entity.") +AnnotationAssertion( "CHEBI:14202") +AnnotationAssertion( "CHEBI:4697") +AnnotationAssertion( "KEGG:C01351") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Donor") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Donator") +AnnotationAssertion(Annotation( "ChEBI") "donneur") +AnnotationAssertion( "CHEBI:17891") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "donor") +SubClassOf( ) + +# Class: (lipid) + +AnnotationAssertion( "'Lipids' is a loosely defined term for substances of biological origin that are soluble in nonpolar solvents. They consist of saponifiable lipids, such as glycerides (fats and oils) and phospholipids, as well as nonsaponifiable lipids, principally steroids.") +AnnotationAssertion( "CHEBI:14517") +AnnotationAssertion( "CHEBI:25054") +AnnotationAssertion( "CHEBI:6486") +AnnotationAssertion( "KEGG:C01356") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Lipid") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "lipids") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:18059") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "lipid") +SubClassOf( ) + +# Class: (hydrogen halide) + +AnnotationAssertion( "0") +AnnotationAssertion( "HX") +AnnotationAssertion( "1.008") +AnnotationAssertion( "1.00783") +AnnotationAssertion( "*[H]") +AnnotationAssertion( "CHEBI:13368") +AnnotationAssertion( "CHEBI:37140") +AnnotationAssertion( "CHEBI:5599") +AnnotationAssertion(Annotation( "IUPAC") "hydrogen halide") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydrogen halides") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "hydrogen halides") +AnnotationAssertion( "CHEBI:18140") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydrogen halide") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (iron atom) + +AnnotationAssertion( "An iron group element atom that has atomic number 26.") +AnnotationAssertion( "0") +AnnotationAssertion( "Fe") +AnnotationAssertion( "InChI=1S/Fe") +AnnotationAssertion( "XEEYBQQBJWHFJM-UHFFFAOYSA-N") +AnnotationAssertion( "55.84500") +AnnotationAssertion( "55.93494") +AnnotationAssertion( "[Fe]") +AnnotationAssertion( "CHEBI:13322") +AnnotationAssertion( "CHEBI:24872") +AnnotationAssertion( "CHEBI:5974") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7439-89-6") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:7439-89-6") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7439-89-6") +AnnotationAssertion( "DrugBank:DB01592") +AnnotationAssertion( "HMDB:HMDB0015531") +AnnotationAssertion( "KEGG:C00023") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:4122945") +AnnotationAssertion( "WebElements:Fe") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "iron") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "26Fe") +AnnotationAssertion(Annotation( "ChEBI") "Eisen") +AnnotationAssertion(Annotation( "IUPAC") "Fe") +AnnotationAssertion(Annotation( "UniProt") "Fe") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Iron") +AnnotationAssertion(Annotation( "ChEBI") "fer") +AnnotationAssertion(Annotation( "IUPAC") "ferrum") +AnnotationAssertion(Annotation( "ChEBI") "hierro") +AnnotationAssertion(Annotation( "ChEBI") "iron") +AnnotationAssertion( "CHEBI:18248") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "iron atom") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (alkane) + +AnnotationAssertion( "An acyclic branched or unbranched hydrocarbon having the general formula CnH2n+2, and therefore consisting entirely of hydrogen atoms and saturated carbon atoms.") +AnnotationAssertion( "0") +AnnotationAssertion( "CH3R") +AnnotationAssertion( "15.035") +AnnotationAssertion( "15.02348") +AnnotationAssertion( "C[*]") +AnnotationAssertion( "CHEBI:13435") +AnnotationAssertion( "CHEBI:22317") +AnnotationAssertion( "CHEBI:2576") +AnnotationAssertion( "KEGG:C01371") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Alkane") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "alkane") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "alkanes") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Alkan") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "RH") +AnnotationAssertion(Annotation( "IUPAC") "alcane") +AnnotationAssertion(Annotation( "IUPAC") "alcanes") +AnnotationAssertion(Annotation( "IUPAC") "alcano") +AnnotationAssertion(Annotation( "IUPAC") "alcanos") +AnnotationAssertion(Annotation( "UniProt") "an alkane") +AnnotationAssertion( "CHEBI:18310") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "alkane") +SubClassOf( ) +SubClassOf( ) + +# Class: (triphenylphosphine) + +AnnotationAssertion( "A member of the class of tertiary phosphines that is phosphane in which the three hydrogens are replaced by phenyl groups.") +AnnotationAssertion( "0") +AnnotationAssertion( "C18H15P") +AnnotationAssertion( "InChI=1S/C18H15P/c1-4-10-16(11-5-1)19(17-12-6-2-7-13-17)18-14-8-3-9-15-18/h1-15H") +AnnotationAssertion( "RIOQSEWOXXDEQQ-UHFFFAOYSA-N") +AnnotationAssertion( "262.292") +AnnotationAssertion( "262.09114") +AnnotationAssertion( "C1=CC=C(C=C1)P(C1=CC=CC=C1)C1=CC=CC=C1") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:603-35-0") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:603-35-0") +AnnotationAssertion( "Chemspider:11283") +AnnotationAssertion( "HMDB:HMDB0259265") +AnnotationAssertion(Annotation( "Europe PMC") "PMCID:PMC8513919") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:2531144") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:31948233") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:32124602") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:32259335") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:34260204") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:34338057") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:610776") +AnnotationAssertion( "Wikipedia:Triphenylphosphine") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "triphenylphosphane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChemIDplus") "PP 360") +AnnotationAssertion(Annotation( "ChEBI") "PPh3") +AnnotationAssertion(Annotation( "ChEBI") "Ph3P") +AnnotationAssertion(Annotation( "ChEBI") "TPP") +AnnotationAssertion(Annotation( "SUBMITTER") "Triphenylphosphan") +AnnotationAssertion(Annotation( "SUBMITTER") "Triphenylphosphin") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "phosphorus triphenyl") +AnnotationAssertion(Annotation( "ChemIDplus") "triphenyl phosphine") +AnnotationAssertion(Annotation( "ChemIDplus") "triphenylphosphide") +AnnotationAssertion(Annotation( "ChemIDplus") "triphenylphosphorus") +AnnotationAssertion( "CHEBI:183318") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "triphenylphosphine") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (phosphate(3-)) + +AnnotationAssertion( "A phosphate ion that is the conjugate base of hydrogenphosphate.") +AnnotationAssertion( "-3") +AnnotationAssertion( "O4P") +AnnotationAssertion( "InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-3") +AnnotationAssertion( "NBIIXXVUZAFLBC-UHFFFAOYSA-K") +AnnotationAssertion( "94.97136") +AnnotationAssertion( "94.95507") +AnnotationAssertion( "[O-]P([O-])([O-])=O") +AnnotationAssertion( "CHEBI:14791") +AnnotationAssertion( "CHEBI:45024") +AnnotationAssertion( "CHEBI:7793") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3903772") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:14265-44-2") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:14265-44-2") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1997") +AnnotationAssertion( "KEGG:C00009") +AnnotationAssertion(Annotation( "ChEBI") "PDBeChem:PO4") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:3903772") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "phosphate") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "tetraoxidophosphate(3-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "tetraoxophosphate(3-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "tetraoxophosphate(V)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Orthophosphate") +AnnotationAssertion(Annotation( "PDBeChem") "PHOSPHATE ION") +AnnotationAssertion(Annotation( "IUPAC") "PO4(3-)") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Phosphate") +AnnotationAssertion(Annotation( "IUPAC") "[PO4](3-)") +AnnotationAssertion( "CHEBI:18367") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "phosphate(3-)") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (nitrile) + +AnnotationAssertion( "A compound having the structure RC#N; thus a C-substituted derivative of hydrocyanic acid, HC#N. In systematic nomenclature, the suffix nitrile denotes the triply bound #N atom, not the carbon atom attached to it.") +AnnotationAssertion( "0") +AnnotationAssertion( "CNR") +AnnotationAssertion( "26.01740") +AnnotationAssertion( "26.00307") +AnnotationAssertion( "[*]C#N") +AnnotationAssertion( "CHEBI:13212") +AnnotationAssertion( "CHEBI:13426") +AnnotationAssertion( "CHEBI:13660") +AnnotationAssertion( "CHEBI:25547") +AnnotationAssertion( "CHEBI:7584") +AnnotationAssertion( "KEGG:C00726") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Nitrile") +AnnotationAssertion(Annotation( "IUPAC") "nitrile") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "nitriles") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Nitril") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "R-CN") +AnnotationAssertion(Annotation( "UniProt") "a nitrile") +AnnotationAssertion(Annotation( "IUPAC") "nitrilos") +AnnotationAssertion( "CHEBI:18379") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nitrile") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (hydrogen cyanide) + +AnnotationAssertion( "A one-carbon compound consisting of a methine group triple bonded to a nitrogen atom") +AnnotationAssertion( "0") +AnnotationAssertion( "CHN") +AnnotationAssertion( "InChI=1S/CHN/c1-2/h1H") +AnnotationAssertion( "LELOWRISYMNNSU-UHFFFAOYSA-N") +AnnotationAssertion( "27.02530") +AnnotationAssertion( "27.01090") +AnnotationAssertion( "C#N") +AnnotationAssertion( "CHEBI:13362") +AnnotationAssertion( "CHEBI:5786") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:74-90-8") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:74-90-8") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:74-90-8") +AnnotationAssertion( "HMDB:HMDB0060292") +AnnotationAssertion( "KEGG:C01326") +AnnotationAssertion( "KNApSAcK:C00007569") +AnnotationAssertion( "MetaCyc:HCN") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:19849830") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:26700190") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:26778429") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:26823582") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:26940198") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:27123778") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1718793") +AnnotationAssertion( "Wikipedia:Hydrogen_cyanide") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Hydrogen cyanide") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydridonitridocarbon") +AnnotationAssertion(Annotation( "IUPAC") "hydrogen cyanide") +AnnotationAssertion(Annotation( "UniProt") "hydrogen cyanide") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydrogen(nitridocarbonate)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "methanenitrile") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Blausaeure") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "Cyanwasserstoff") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "HCN") +AnnotationAssertion(Annotation( "IUPAC") "[CHN]") +AnnotationAssertion(Annotation( "IUPAC") "formonitrile") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "hydrocyanic acid") +AnnotationAssertion( "CHEBI:18407") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydrogen cyanide") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (inorganic fluoride salt) + +AnnotationAssertion( "A fluoride salt that lacks C-H bonds") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:190416") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "inorganic fluoride salt") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + +# Class: (acetonitrile-d3) + +AnnotationAssertion( "0") +AnnotationAssertion( "C2D3N") +AnnotationAssertion( "InChI=1S/C2H3N/c1-2-3/h1H3/i1D3") +AnnotationAssertion( "WEVYAHXRMPXWCK-FIBGUPNXSA-N") +AnnotationAssertion( "44.071") +AnnotationAssertion( "44.04538") +AnnotationAssertion( "N#CC([H])([H])[H]") +AnnotationAssertion(Annotation( "SUBMITTER") "CAS:2206-26-0") +AnnotationAssertion(Annotation( "SUBMITTER") Annotation( ) "2,2,2-trideuterioacetonitrile") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "Acetonitril-d3") +AnnotationAssertion(Annotation( "SUBMITTER") "CD3CN") +AnnotationAssertion(Annotation( "SUBMITTER") "methyl-d3 cyanide") +AnnotationAssertion( "CHEBI:193038") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "acetonitrile-d3") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (benzene-d6) + +AnnotationAssertion( "0") +AnnotationAssertion( "C6D6") +AnnotationAssertion( "InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H/i1D,2D,3D,4D,5D,6D") +AnnotationAssertion( "UHOVQNZJYSORNB-MZWXYZOWSA-N") +AnnotationAssertion( "84.151") +AnnotationAssertion( "84.08461") +AnnotationAssertion( "C1(=C(C(=C(C(=C1[2H])[2H])[2H])[2H])[2H])[2H]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:1076-43-3") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:1076-43-3") +AnnotationAssertion( "Wikipedia:Deuterated_benzene") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "((2)H6)benzene") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "1,2,3,4,5,6-hexadeuteriobenzene") +AnnotationAssertion(Annotation( "SUBMITTER") "Benzol-d6") +AnnotationAssertion(Annotation( "ChemIDplus") "benzene-1,2,3,4,5,6-d6") +AnnotationAssertion(Annotation( "SUBMITTER") "hexadeuterobenzene") +AnnotationAssertion(Annotation( "SUBMITTER") "perdeuterobenzene") +AnnotationAssertion( "CHEBI:193039") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "benzene-d6") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (N,N-dimethylformamide-d7) + +AnnotationAssertion( "0") +AnnotationAssertion( "C3D7NO") +AnnotationAssertion( "InChI=1S/C3H7NO/c1-4(2)3-5/h3H,1-2H3/i1D3,2D3,3D") +AnnotationAssertion( "ZMXDDKWLCZADIW-YYWVXINBSA-N") +AnnotationAssertion( "80.138") +AnnotationAssertion( "80.09670") +AnnotationAssertion( "O=C(N(C([2H])([2H])[2H])C([2H])([2H])[2H])[2H]") +AnnotationAssertion(Annotation( "SUBMITTER") "CAS:4472-41-7") +AnnotationAssertion(Annotation( "SUBMITTER") "Wikipedia:https://en.wikipedia.org/wiki/Deuterated_DMF") +AnnotationAssertion(Annotation( "SUBMITTER") Annotation( ) "1-deuterio-N,N-bis(trideuteriomethyl)formamide") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "DMF-d7") +AnnotationAssertion(Annotation( "SUBMITTER") "deuterated DMF") +AnnotationAssertion(Annotation( "SUBMITTER") "heptadeutero-N,N-dimethylformamide") +AnnotationAssertion( "CHEBI:193040") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "N,N-dimethylformamide-d7") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (dimethyl sulfoxide-d6) + +AnnotationAssertion( "0") +AnnotationAssertion( "C2D6OS") +AnnotationAssertion( "InChI=1S/C2H6OS/c1-4(2)3/h1-2H3/i1D3,2D3") +AnnotationAssertion( "IAZDPXIOMUYVGZ-WFGJKAKNSA-N") +AnnotationAssertion( "84.170") +AnnotationAssertion( "84.05160") +AnnotationAssertion( "S(=O)(C([2H])([2H])[2H])C([2H])([2H])[2H]") +AnnotationAssertion(Annotation( "SUBMITTER") "CAS:2206-27-1") +AnnotationAssertion(Annotation( "SUBMITTER") "Wikipedia:https://en.wikipedia.org/wiki/Deuterated_DMSO") +AnnotationAssertion(Annotation( "SUBMITTER") Annotation( ) "trideuterio(trideuteriomethylsulfinyl)methane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "DMSO-d6") +AnnotationAssertion(Annotation( "SUBMITTER") "deuterated DMSO") +AnnotationAssertion(Annotation( "SUBMITTER") "hexadeuterodimethyl sulfoxide") +AnnotationAssertion( "CHEBI:193041") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "dimethyl sulfoxide-d6") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (dichloromethane-d2) + +AnnotationAssertion( "0") +AnnotationAssertion( "CD2Cl2") +AnnotationAssertion( "InChI=1S/CH2Cl2/c2-1-3/h1H2/i1D2") +AnnotationAssertion( "YMWUJEATGCHHMB-DICFDUPASA-N") +AnnotationAssertion( "86.940") +AnnotationAssertion( "85.96591") +AnnotationAssertion( "ClC(Cl)([H])[H]") +AnnotationAssertion(Annotation( "SUBMITTER") "CAS:1665-00-5") +AnnotationAssertion(Annotation( "SUBMITTER") "Wikipedia:https://en.wikipedia.org/wiki/Deuterated_dichloromethane") +AnnotationAssertion(Annotation( "SUBMITTER") Annotation( ) "dichloro(dideuterio)methane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "methylene chloride-d2") +AnnotationAssertion( "CHEBI:193042") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "dichloromethane-d2") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (ethanol-d6) + +AnnotationAssertion( "0") +AnnotationAssertion( "C2D6O") +AnnotationAssertion( "InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3/i1D3,2D2,3D") +AnnotationAssertion( "LFQSCWFLJHTTHZ-LIDOUZCJSA-N") +AnnotationAssertion( "52.106") +AnnotationAssertion( "52.07953") +AnnotationAssertion( "O(C(C([H])([H])[H])([H])[H])[H]") +AnnotationAssertion(Annotation( "SUBMITTER") "CAS:1516-08-1") +AnnotationAssertion(Annotation( "SUBMITTER") "Wikipedia:https://en.wikipedia.org/wiki/Deuterated_ethanol") +AnnotationAssertion(Annotation( "SUBMITTER") Annotation( ) "1,1,1,2,2-pentadeuterio-2-deuteriooxyethane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "deuterated ethanol") +AnnotationAssertion(Annotation( "SUBMITTER") "ethyl-d5 alcohol-d") +AnnotationAssertion(Annotation( "SUBMITTER") "hexadeuteroethanol") +AnnotationAssertion( "CHEBI:193043") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ethanol-d6") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (nitrobenzene-d5) + +AnnotationAssertion( "0") +AnnotationAssertion( "C6D5NO2") +AnnotationAssertion( "InChI=1S/C6H5NO2/c8-7(9)6-4-2-1-3-5-6/h1-5H/i1D,2D,3D,4D,5D") +AnnotationAssertion( "LQNUZADURLCDLV-RALIUCGRSA-N") +AnnotationAssertion( "128.142") +AnnotationAssertion( "128.06341") +AnnotationAssertion( "[O-][N+](=O)C1=C(C(=C(C(=C1[2H])[2H])[2H])[2H])[2H]") +AnnotationAssertion(Annotation( "SUBMITTER") "CAS:4165-60-0") +AnnotationAssertion(Annotation( "SUBMITTER") Annotation( ) "1,2,3,4,5-pentadeuterio-6-nitrobenzene") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:193044") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nitrobenzene-d5") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (nitromethane-d3) + +AnnotationAssertion( "0") +AnnotationAssertion( "CD3NO2") +AnnotationAssertion( "InChI=1S/CH3NO2/c1-2(3)4/h1H3/i1D3") +AnnotationAssertion( "LYGJENNIWJXYER-FIBGUPNXSA-N") +AnnotationAssertion( "64.058") +AnnotationAssertion( "64.03521") +AnnotationAssertion( "[O-][N+](=O)C([2H])([2H])[2H]") +AnnotationAssertion(Annotation( "SUBMITTER") "CAS:13031-32-8") +AnnotationAssertion(Annotation( "SUBMITTER") Annotation( ) "trideuterio(nitro)methane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "deuterated nitromethane") +AnnotationAssertion(Annotation( "SUBMITTER") "nitro(2H3)methane") +AnnotationAssertion( "CHEBI:193045") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nitromethane-d3") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (pyridine-d5) + +AnnotationAssertion( "0") +AnnotationAssertion( "C5D5N") +AnnotationAssertion( "InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H/i1D,2D,3D,4D,5D") +AnnotationAssertion( "JUJWROOIHBZHMG-RALIUCGRSA-N") +AnnotationAssertion( "84.133") +AnnotationAssertion( "84.07358") +AnnotationAssertion( "N1=C(C(=C(C(=C1[2H])[2H])[2H])[2H])[2H]") +AnnotationAssertion(Annotation( "SUBMITTER") "CAS:7291-22-7") +AnnotationAssertion(Annotation( "SUBMITTER") Annotation( ) "2,3,4,5,6-pentadeuteriopyridine") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "(2H5)pyridine") +AnnotationAssertion(Annotation( "SUBMITTER") "deuterated pyridine") +AnnotationAssertion( "CHEBI:193046") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "pyridine-d5") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (oxolane-d8) + +AnnotationAssertion( "0") +AnnotationAssertion( "C4D8O") +AnnotationAssertion( "InChI=1S/C4H8O/c1-2-4-5-3-1/h1-4H2/i1D2,2D2,3D2,4D2") +AnnotationAssertion( "WYURNTSHIVDZCO-SVYQBANQSA-N") +AnnotationAssertion( "80.156") +AnnotationAssertion( "80.10773") +AnnotationAssertion( "O1C(C(C(C1([H])[H])([H])[H])([H])[H])([H])[H]") +AnnotationAssertion(Annotation( "SUBMITTER") "CAS:1693-74-9") +AnnotationAssertion(Annotation( "SUBMITTER") "Wikipedia:https://en.wikipedia.org/wiki/Deuterated_THF") +AnnotationAssertion(Annotation( "SUBMITTER") Annotation( ) "2,2,3,3,4,4,5,5-octadeuteriooxolane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "THF-d8") +AnnotationAssertion(Annotation( "SUBMITTER") "deuterated THF") +AnnotationAssertion(Annotation( "SUBMITTER") "tetrahydrofuran-d8") +AnnotationAssertion( "CHEBI:193047") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oxolane-d8") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (toluene-d8) + +AnnotationAssertion( "0") +AnnotationAssertion( "C7D8") +AnnotationAssertion( "InChI=1S/C7H8/c1-7-5-3-2-4-6-7/h2-6H,1H3/i1D3,2D,3D,4D,5D,6D") +AnnotationAssertion( "YXFVVABEGXRONW-JGUCLWPXSA-N") +AnnotationAssertion( "100.190") +AnnotationAssertion( "100.11281") +AnnotationAssertion( "C1(=C(C(=C(C(=C1[2H])[2H])[2H])[2H])[2H])C([2H])([2H])[2H]") +AnnotationAssertion(Annotation( "SUBMITTER") "CAS:2037-26-5") +AnnotationAssertion(Annotation( "SUBMITTER") Annotation( ) "1,2,3,4,5-pentadeuterio-6-(trideuteriomethyl)benzene") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "octadeuterotoluene") +AnnotationAssertion(Annotation( "SUBMITTER") "perdeuterated toluene") +AnnotationAssertion(Annotation( "SUBMITTER") "perdeuteriotoluene") +AnnotationAssertion( "CHEBI:193048") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "toluene-d8") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (acetic acid-d4) + +AnnotationAssertion( "0") +AnnotationAssertion( "C2D4O2") +AnnotationAssertion( "InChI=1S/C2H4O2/c1-2(3)4/h1H3,(H,3,4)/i1D3/hD") +AnnotationAssertion( "QTBSBXVTEAMEQO-GUEYOVJQSA-N") +AnnotationAssertion( "64.076") +AnnotationAssertion( "64.04624") +AnnotationAssertion( "O(C(=O)C([2H])([2H])[2H])[2H]") +AnnotationAssertion(Annotation( "SUBMITTER") "CAS:1186-52-3") +AnnotationAssertion(Annotation( "SUBMITTER") Annotation( ) "deuterio 2,2,2-trideuterioacetate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "(2H3)acetic (2H)acid") +AnnotationAssertion(Annotation( "SUBMITTER") "CD3COOD") +AnnotationAssertion(Annotation( "SUBMITTER") "deuterated acetic acid") +AnnotationAssertion(Annotation( "SUBMITTER") "tetradeuteroacetic acid") +AnnotationAssertion( "CHEBI:193049") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "acetic acid-d4") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (trifluoroacetic acid-d1) + +AnnotationAssertion( "0") +AnnotationAssertion( "C2DF3O2") +AnnotationAssertion( "InChI=1S/C2HF3O2/c3-2(4,5)1(6)7/h(H,6,7)/i/hD") +AnnotationAssertion( "DTQVDTLACAAQTR-DYCDLGHISA-N") +AnnotationAssertion( "115.029") +AnnotationAssertion( "114.99914") +AnnotationAssertion( "FC(F)(F)C(O[2H])=O") +AnnotationAssertion(Annotation( "SUBMITTER") "CAS:599-00-8") +AnnotationAssertion(Annotation( "SUBMITTER") Annotation( ) "deuterio 2,2,2-trifluoroacetate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "CF3COOD") +AnnotationAssertion(Annotation( "SUBMITTER") "TFA-d") +AnnotationAssertion(Annotation( "SUBMITTER") "deuterated trifluoroacetic acid") +AnnotationAssertion(Annotation( "SUBMITTER") "deuterotrifluoroacetic acid") +AnnotationAssertion(Annotation( "SUBMITTER") "trifluoroacetic acid-d") +AnnotationAssertion( "CHEBI:193050") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "trifluoroacetic acid-d1") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (1,1,2-Trichlorotrifluoroethane) + +AnnotationAssertion( "0") +AnnotationAssertion( "C2Cl3F3") +AnnotationAssertion( "InChI=1S/C2Cl3F3/c3-1(4,6)2(5,7)8") +AnnotationAssertion( "AJDIZQLSFPQPEY-UHFFFAOYSA-N") +AnnotationAssertion( "187.370") +AnnotationAssertion( "185.90177") +AnnotationAssertion( "C(C(Cl)(F)F)(F)(Cl)Cl") +AnnotationAssertion(Annotation( "SUBMITTER") "CAS:76-13-1") +AnnotationAssertion(Annotation( "SUBMITTER") "Wikipedia:https://en.wikipedia.org/wiki/1,1,2-Trichloro-1,2,2-trifluoroethane") +AnnotationAssertion(Annotation( "SUBMITTER") Annotation( ) "1,1,2-trichloro-1,2,2-trifluoroethane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "CFC-113") +AnnotationAssertion(Annotation( "SUBMITTER") "Freon 113") +AnnotationAssertion( "CHEBI:193131") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "1,1,2-Trichlorotrifluoroethane") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (formic acid-d2) + +AnnotationAssertion( "0") +AnnotationAssertion( "CD2O2") +AnnotationAssertion( "InChI=1S/CH2O2/c2-1-3/h1H,(H,2,3)/i1D/hD") +AnnotationAssertion( "BDAGIHXWWSANSR-PFUFQJKNSA-N") +AnnotationAssertion( "48.037") +AnnotationAssertion( "48.01803") +AnnotationAssertion( "O(C(=O)[2H])[2H]") +AnnotationAssertion(Annotation( "SUBMITTER") "CAS:920-42-3") +AnnotationAssertion(Annotation( "SUBMITTER") Annotation( ) "deuterio deuterioformate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "(2H)formic (2)acid") +AnnotationAssertion(Annotation( "SUBMITTER") "DCOOD") +AnnotationAssertion( "CHEBI:193132") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "formic acid-d2") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (methanol-d1) + +AnnotationAssertion( "0") +AnnotationAssertion( "CH3DO") +AnnotationAssertion( "InChI=1S/CH4O/c1-2/h2H,1H3/i2D") +AnnotationAssertion( "OKKJLVBELUTLKV-VMNATFBRSA-N") +AnnotationAssertion( "33.048") +AnnotationAssertion( "33.03249") +AnnotationAssertion( "O(C([H])([H])[H])[H]") +AnnotationAssertion(Annotation( "SUBMITTER") "CAS:1455-13-6") +AnnotationAssertion(Annotation( "SUBMITTER") Annotation( ) "deuteriooxymethane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "methyl alcohol-d1") +AnnotationAssertion(Annotation( "SUBMITTER") "mono-deuteromethanol") +AnnotationAssertion( "CHEBI:193133") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "methanol-d1") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (1,1,2,2-tetrachlorethane-d2) + +AnnotationAssertion( "0") +AnnotationAssertion( "C2D2Cl4") +AnnotationAssertion( "InChI=1S/C2H2Cl4/c3-1(4)2(5)6/h1-2H/i1D,2D") +AnnotationAssertion( "QPFMBZIOSGYJDE-QDNHWIQGSA-N") +AnnotationAssertion( "169.850") +AnnotationAssertion( "167.90361") +AnnotationAssertion( "ClC(Cl)(C(Cl)(Cl)[H])[H]") +AnnotationAssertion(Annotation( "SUBMITTER") "CAS:33685-54-0") +AnnotationAssertion(Annotation( "SUBMITTER") Annotation( ) "1,1,2,2-tetrachloro-1,2-dideuterioethane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "TCE-d2") +AnnotationAssertion( "CHEBI:193134") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "1,1,2,2-tetrachlorethane-d2") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (dimethyl ether-d6) + +AnnotationAssertion( "0") +AnnotationAssertion( "C2D6O") +AnnotationAssertion( "InChI=1S/C2H6O/c1-3-2/h1-2H3/i1D3,2D3") +AnnotationAssertion( "LCGLNKUTAGEVQW-WFGJKAKNSA-N") +AnnotationAssertion( "52.106") +AnnotationAssertion( "52.07953") +AnnotationAssertion( "O(C([H])([H])[H])C([H])([H])[H]") +AnnotationAssertion(Annotation( "SUBMITTER") "CAS:17222-37-6") +AnnotationAssertion(Annotation( "SUBMITTER") Annotation( ) "trideuterio(trideuteriomethoxy)methane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "(CD3)2O") +AnnotationAssertion(Annotation( "SUBMITTER") "dimethyl-d6 ether") +AnnotationAssertion( "CHEBI:193135") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "dimethyl ether-d6") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (fluorosulfonic acid) + +AnnotationAssertion( "0") +AnnotationAssertion( "FHO3S") +AnnotationAssertion( "InChI=1S/FHO3S/c1-5(2,3)4/h(H,2,3,4)") +AnnotationAssertion( "UQSQSQZYBQSBJZ-UHFFFAOYSA-N") +AnnotationAssertion( "100.060") +AnnotationAssertion( "99.96304") +AnnotationAssertion( "S(=O)(F)(=O)O") +AnnotationAssertion(Annotation( "SUBMITTER") "CAS:7789-21-1") +AnnotationAssertion(Annotation( "SUBMITTER") "Wikipedia:https://en.wikipedia.org/wiki/Fluorosulfuric_acid") +AnnotationAssertion(Annotation( "SUBMITTER") Annotation( ) "sulfurofluoridic acid") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "fluorosulfuric acid") +AnnotationAssertion(Annotation( "SUBMITTER") "monofluorosulfuric acid") +AnnotationAssertion(Annotation( "SUBMITTER") "perfluorosulfonic acid") +AnnotationAssertion( "CHEBI:193136") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluorosulfonic acid") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (antimony pentafluoride) + +AnnotationAssertion( "0") +AnnotationAssertion( "F5Sb") +AnnotationAssertion( "InChI=1S/5FH.Sb/h5*1H;/q;;;;;+5/p-5") +AnnotationAssertion( "VBVBHWZYQGJZLR-UHFFFAOYSA-I") +AnnotationAssertion( "216.752") +AnnotationAssertion( "215.89583") +AnnotationAssertion( "[Sb](F)(F)(F)(F)F") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7783-70-2") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7783-70-2") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:1113327") +AnnotationAssertion( "Wikipedia:Antimony_pentafluoride") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "antimony(V) fluoride") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "Antimon(V)-fluorid") +AnnotationAssertion(Annotation( "SUBMITTER") "pentafluoridoantimony") +AnnotationAssertion( "CHEBI:193146") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "antimony pentafluoride") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (interhalogen compound) + +AnnotationAssertion( "A molecule which contains two or more different halogen atoms (fluorine, chlorine, bromine, iodine, or astatine) and no atoms of elements from any other group.") +AnnotationAssertion(Annotation( "SUBMITTER") "Wikipedia:https://en.wikipedia.org/wiki/Interhalogen") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "interhalogen") +AnnotationAssertion( "CHEBI:193147") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "interhalogen compound") +SubClassOf( ) + +# Class: (bromine pentafluoride) + +AnnotationAssertion( "0") +AnnotationAssertion( "BrF5") +AnnotationAssertion( "InChI=1S/BrF5/c2-1(3,4,5)6") +AnnotationAssertion( "XHVUVQAANZKEKF-UHFFFAOYSA-N") +AnnotationAssertion( "174.896") +AnnotationAssertion( "173.91035") +AnnotationAssertion( "Br(F)(F)(F)(F)F") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7789-30-2") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7789-30-2") +AnnotationAssertion( "Chemspider:23008") +AnnotationAssertion( "Wikipedia:Bromine_pentafluoride") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:193148") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "bromine pentafluoride") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (1-Propanesulfonic acid, 3-(trimethylsilyl)- (sodium salt)) + +AnnotationAssertion( "0") +AnnotationAssertion( "C6H15O3SSi.Na") +AnnotationAssertion( "InChI=1S/C6H16O3SSi.Na/c1-11(2,3)6-4-5-10(7,8)9;/h4-6H2,1-3H3,(H,7,8,9);/q;+1/p-1") +AnnotationAssertion( "HWEXKRHYVOGVDA-UHFFFAOYSA-M") +AnnotationAssertion( "218.320") +AnnotationAssertion( "218.04089") +AnnotationAssertion( "S([O-])(=O)(=O)CCC[Si](C)(C)C.[Na+]") +AnnotationAssertion( "Chemspider:67436") +AnnotationAssertion( "KEGG:D84158") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "sodium;3-trimethylsilylpropane-1-sulonate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:195173") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "1-Propanesulfonic acid, 3-(trimethylsilyl)- (sodium salt)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (NMR solvent role) + +AnnotationAssertion( "A solvent used in nuclear magnetic resonance (NMR) spectroscopy.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "NMR solvents") +AnnotationAssertion(Annotation( "SUBMITTER") "NMR-Loesemittel") +AnnotationAssertion(Annotation( "SUBMITTER") "NMR-Loesungsmittel") +AnnotationAssertion( "CHEBI:197449") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "NMR solvent role") +SubClassOf( ) + +# Class: (sulfoxide) + +AnnotationAssertion( "An organosulfur compound having the structure R2S=O or R2C=S=O (R =/= H).") +AnnotationAssertion( "CHEBI:35813") +AnnotationAssertion(Annotation( "ChEBI") "sulfoxide") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "S-oxides") +AnnotationAssertion(Annotation( "ChEBI") "sulfoxides") +AnnotationAssertion( "CHEBI:22063") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sulfoxide") +SubClassOf( ) + +# Class: (acyl group) + +AnnotationAssertion( "An organic group formed by removing one or more hydroxy groups from an oxoacid that has the general structure RkE(=O)l(OH)m (l =/= 0). Although the term is almost always applied to organic compounds, with carboxylic acid as the oxoacid, acyl groups can in principle be derived from other types of acids such as sulfonic acids or phosphonic acids.") +AnnotationAssertion(Annotation( "IUPAC") "acyl group") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "alkanoyl") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "acyl groups") +AnnotationAssertion(Annotation( "ChEBI") "alkanoyl group") +AnnotationAssertion(Annotation( "IUPAC") "groupe acyle") +AnnotationAssertion( "CHEBI:22221") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "acyl group") +SubClassOf( ) + +# Class: (alkali metal atom) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "alkali metals") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Alkalimetall") +AnnotationAssertion(Annotation( "ChEBI") "Alkalimetalle") +AnnotationAssertion(Annotation( "ChEBI") "alkali metal") +AnnotationAssertion(Annotation( "ChEBI") "metal alcalin") +AnnotationAssertion(Annotation( "ChEBI") "metal alcalino") +AnnotationAssertion(Annotation( "ChEBI") "metales alcalinos") +AnnotationAssertion(Annotation( "ChEBI") "metaux alcalins") +AnnotationAssertion( "CHEBI:22314") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "alkali metal atom") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + +# Class: (alkyl group) + +AnnotationAssertion( "A univalent group -CnH2n+1 derived from an alkane by removal of a hydrogen atom from any carbon atom.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "alkyl group") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "alkyl groups") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "groupe alkyle") +AnnotationAssertion(Annotation( "IUPAC") "grupo alquilo") +AnnotationAssertion(Annotation( "IUPAC") "grupos alquilo") +AnnotationAssertion( "CHEBI:22323") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "alkyl group") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (alkyl phosphate) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "alkyl phosphates") +AnnotationAssertion( "CHEBI:22324") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "alkyl phosphate") +SubClassOf( ) +SubClassOf( ) + +# Class: (anion) + +AnnotationAssertion( "A monoatomic or polyatomic species having one or more elementary charges of the electron.") +AnnotationAssertion(Annotation( "ChEBI") "Anion") +AnnotationAssertion(Annotation( "ChEBI") "anion") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "anion") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Anionen") +AnnotationAssertion(Annotation( "ChEBI") "aniones") +AnnotationAssertion(Annotation( "IUPAC") "anions") +AnnotationAssertion( "CHEBI:22563") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "anion") +SubClassOf( ) + +# Class: (base) + +AnnotationAssertion( "A molecular entity having an available pair of electrons capable of forming a covalent bond with a hydron (Bronsted base) or with the vacant orbital of some other molecular entity (Lewis base).") +AnnotationAssertion( "KEGG:C00701") +AnnotationAssertion(Annotation( "ChEBI") "Base") +AnnotationAssertion(Annotation( "ChEBI") "base") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "base") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Base1") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Base2") +AnnotationAssertion(Annotation( "ChEBI") "Basen") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Nucleobase") +AnnotationAssertion(Annotation( "ChEBI") "bases") +AnnotationAssertion( "CHEBI:22695") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "base") +SubClassOf( ) + +# Class: (benzenes) + +AnnotationAssertion( "Any benzenoid aromatic compound consisting of the benzene skeleton and its substituted derivatives.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:22712") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "benzenes") +SubClassOf( ) + +# Class: (NMR chemical shift reference compound) + +AnnotationAssertion( "Any compound that produces a peak used to reference an NMR spectrum during data pre-processing.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "NMR chemical shift reference compounds") +AnnotationAssertion(Annotation( "ChEBI") "NMR chemical shift standard") +AnnotationAssertion(Annotation( "ChEBI") "NMR chemical shift standards") +AnnotationAssertion(Annotation( "ChEBI") "NMR internal standard") +AnnotationAssertion(Annotation( "ChEBI") "NMR internal standards") +AnnotationAssertion(Annotation( "ChEBI") "NMR reference standard") +AnnotationAssertion(Annotation( "ChEBI") "NMR reference standards") +AnnotationAssertion( "CHEBI:228364") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "NMR chemical shift reference compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (3-(trimethylsilyl)propane-1-sulfonate) + +AnnotationAssertion( "An organosulfonate oxoanion that is the conjugate base of 3-(trimethylsilyl)propane-1-sulfonic acid resulting from the deprotonation of the sulfo group; Major species at pH 7.3.") +AnnotationAssertion( "-1") +AnnotationAssertion( "C6H15O3SSi") +AnnotationAssertion( "InChI=1S/C6H16O3SSi/c1-11(2,3)6-4-5-10(7,8)9/h4-6H2,1-3H3,(H,7,8,9)/p-1") +AnnotationAssertion( "TVZRAEYQIKYCPH-UHFFFAOYSA-M") +AnnotationAssertion( "195.330") +AnnotationAssertion( "195.05167") +AnnotationAssertion( "C[Si](C)(C)CCCS([O-])(=O)=O") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "3-(trimethylsilyl)propane-1-sulfonate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "2,2-dimethyl-2-silapentane-5-sulfonate") +AnnotationAssertion(Annotation( "ChEBI") "3-(trimethylsilyl)-1-propanesulfonate") +AnnotationAssertion(Annotation( "ChEBI") "DSS anion") +AnnotationAssertion( "CHEBI:228806") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "3-(trimethylsilyl)propane-1-sulfonate") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (boron molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "boron molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "boron compounds") +AnnotationAssertion(Annotation( "ChEBI") "boron molecular entities") +AnnotationAssertion( "CHEBI:22916") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "boron molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (bromide salt) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "bromide salts") +AnnotationAssertion(Annotation( "ChEBI") "bromides") +AnnotationAssertion( "CHEBI:22925") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "bromide salt") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (bromine atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "Br") +AnnotationAssertion( "InChI=1S/Br") +AnnotationAssertion( "WKBOTKDWSSQWDR-UHFFFAOYSA-N") +AnnotationAssertion( "79.90400") +AnnotationAssertion( "78.91834") +AnnotationAssertion( "[Br]") +AnnotationAssertion( "WebElements:Br") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "bromine") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "35Br") +AnnotationAssertion(Annotation( "ChEBI") "Br") +AnnotationAssertion(Annotation( "ChEBI") "Brom") +AnnotationAssertion(Annotation( "ChEBI") "brome") +AnnotationAssertion(Annotation( "ChEBI") "bromine") +AnnotationAssertion(Annotation( "ChEBI") "bromo") +AnnotationAssertion(Annotation( "ChEBI") "bromum") +AnnotationAssertion( "CHEBI:22927") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "bromine atom") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (bromine molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "bromine molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "bromine compounds") +AnnotationAssertion(Annotation( "ChEBI") "bromine molecular entities") +AnnotationAssertion( "CHEBI:22928") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "bromine molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (yttrium nitrate) + +AnnotationAssertion( "The inorganic nitrate salt of yttrium(III).") +AnnotationAssertion( "0") +AnnotationAssertion( "NO3.NO3.NO3.Y") +AnnotationAssertion( "InChI=1S/3NO3.Y/c3*2-1(3)4;/q3*-1;+3") +AnnotationAssertion( "BXJPTTGFESFXJU-UHFFFAOYSA-N") +AnnotationAssertion( "274.918") +AnnotationAssertion( "274.86929") +AnnotationAssertion( "[Y+3].[O-][N+]([O-])=O.[O-][N+]([O-])=O.[O-][N+]([O-])=O") +AnnotationAssertion(Annotation( "ChEBI") "CAS:10361-93-0") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:21611672") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:25966754") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:28866266") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:32349286") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:36512970") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:37102272") +AnnotationAssertion( "Wikipedia:Yttrium(III)_nitrate") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "yttrium trinitrate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "nitric acid yttrium(3+) salt") +AnnotationAssertion(Annotation( "ChEBI") "nitric acid, yttrium(3+) salt") +AnnotationAssertion(Annotation( "ChEBI") "yttrium(3+) nitrate") +AnnotationAssertion(Annotation( "ChEBI") "yttrium(III) nitrate") +AnnotationAssertion( "CHEBI:229454") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "yttrium nitrate") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (dimethylcadmium) + +AnnotationAssertion( "0") +AnnotationAssertion( "CH3.CH3.Cd") +AnnotationAssertion( "InChI=1S/2CH3.Cd/h2*1H3;/q2*-1;+2") +AnnotationAssertion( "VQNPSCRXHSIJTH-UHFFFAOYSA-N") +AnnotationAssertion( "142.484") +AnnotationAssertion( "143.95031") +AnnotationAssertion( "[Cd+2].[CH3-].[CH3-]") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:229455") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "dimethylcadmium") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (xenon oxytetrafluoride) + +AnnotationAssertion( "0") +AnnotationAssertion( "F4OXe") +AnnotationAssertion( "InChI=1S/F4OXe/c1-6(2,3,4)5") +AnnotationAssertion( "ONRYXFFHIXYZMZ-UHFFFAOYSA-N") +AnnotationAssertion( "223.286") +AnnotationAssertion( "223.89268") +AnnotationAssertion( "[Xe](F)(F)(F)(F)=O") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:229456") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "xenon oxytetrafluoride") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (rhodium acetylacetonate) + +AnnotationAssertion( "0") +AnnotationAssertion( "C15H24O6Rh") +AnnotationAssertion( "403.256") +AnnotationAssertion( "403.06279") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:229457") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "rhodium acetylacetonate") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (titan(III)-nitrate) + +AnnotationAssertion( "0") +AnnotationAssertion( "NO3.NO3.NO3.Tl") +AnnotationAssertion( "InChI=1S/3NO3.Tl/c3*2-1(3)4;/q3*-1;+3") +AnnotationAssertion( "KLBIUKJOZFWCLW-UHFFFAOYSA-N") +AnnotationAssertion( "390.390") +AnnotationAssertion( "390.93788") +AnnotationAssertion( "[N+]([O-])([O-])=O.[N+]([O-])([O-])=O.[N+]([O-])([O-])=O.[Tl+3]") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:229458") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "titan(III)-nitrate") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (cadmium atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "Cd") +AnnotationAssertion( "InChI=1S/Cd") +AnnotationAssertion( "BDOSMKKIYDKNTQ-UHFFFAOYSA-N") +AnnotationAssertion( "112.41100") +AnnotationAssertion( "113.90336") +AnnotationAssertion( "[Cd]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7440-43-9") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:7440-43-9") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7440-43-9") +AnnotationAssertion( "KEGG:C01413") +AnnotationAssertion( "WebElements:Cd") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "cadmium") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "48Cd") +AnnotationAssertion(Annotation( "IUPAC") "Cd") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "Kadmium") +AnnotationAssertion(Annotation( "ChEBI") "cadmio") +AnnotationAssertion(Annotation( "ChEBI") "cadmium") +AnnotationAssertion( "CHEBI:22977") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cadmium atom") +SubClassOf( ) + +# Class: (cadmium molecular entity) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "cadmium compounds") +AnnotationAssertion(Annotation( "ChEBI") "cadmium molecular entities") +AnnotationAssertion( "CHEBI:22978") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cadmium molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (carbamoyl group) + +AnnotationAssertion( "The univalent carboacyl group formed by loss of -OH from the carboxy group of carbamic acid.") +AnnotationAssertion( "0") +AnnotationAssertion( "CH2NO") +AnnotationAssertion( "44.03272") +AnnotationAssertion( "44.01364") +AnnotationAssertion( "*C(N)=O") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24168430") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "carbamoyl") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "-C(O)NH2") +AnnotationAssertion(Annotation( "IUPAC") "-CONH2") +AnnotationAssertion(Annotation( "IUPAC") "aminocarbonyl") +AnnotationAssertion(Annotation( "ChEBI") "carbamyl") +AnnotationAssertion(Annotation( "ChEBI") "carbamyl group") +AnnotationAssertion(Annotation( "IUPAC") "carboxamide") +AnnotationAssertion( "CHEBI:23004") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "carbamoyl group") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (carbonyl group) + +AnnotationAssertion( "0") +AnnotationAssertion( "CO") +AnnotationAssertion( "28.01010") +AnnotationAssertion( "27.99491") +AnnotationAssertion( "O=C(*)*") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "carbonyl") +AnnotationAssertion(Annotation( "ChEBI") "carbonyl group") +AnnotationAssertion(Annotation( "UniProt") "carbonyl group") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") ">C=O") +AnnotationAssertion( "CHEBI:23019") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "carbonyl group") +SubClassOf( ) + +# Class: (chlorine atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "Cl") +AnnotationAssertion( "InChI=1S/Cl") +AnnotationAssertion( "ZAMOUSCENKQFHK-UHFFFAOYSA-N") +AnnotationAssertion( "35.45270") +AnnotationAssertion( "34.96885") +AnnotationAssertion( "[Cl]") +AnnotationAssertion( "WebElements:Cl") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "chlorine") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "17Cl") +AnnotationAssertion(Annotation( "ChEBI") "Chlor") +AnnotationAssertion(Annotation( "IUPAC") "Cl") +AnnotationAssertion(Annotation( "ChEBI") "chlore") +AnnotationAssertion(Annotation( "ChEBI") "chlorine") +AnnotationAssertion(Annotation( "ChEBI") "chlorum") +AnnotationAssertion(Annotation( "ChEBI") "cloro") +AnnotationAssertion( "CHEBI:23116") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chlorine atom") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (chlorine molecular entity) + +AnnotationAssertion( "A halogen molecular entity containing one or more atoms of chlorine.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:23117") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chlorine molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (chloroalkane) + +AnnotationAssertion( "Any haloalkane that consists of an alkane substituted by at least one chloro group.") +AnnotationAssertion(Annotation( "ChEBI") "chloroalkane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "alkyl chloride") +AnnotationAssertion(Annotation( "ChEBI") "alkyl chlorides") +AnnotationAssertion(Annotation( "ChEBI") "chloroalkanes") +AnnotationAssertion( "CHEBI:23128") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chloroalkane") +SubClassOf( ) +SubClassOf( ) + +# Class: (chloromethanes) + +AnnotationAssertion( "A halomethane that is methane in which one or more hydrogens has been replaced by chlorine.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:23148") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chloromethanes") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + +# Class: (cofactor) + +AnnotationAssertion( "An organic molecule or ion (usually a metal ion) that is required by an enzyme for its activity. It may be attached either loosely (coenzyme) or tightly (prosthetic group).") +AnnotationAssertion( "Wikipedia:Cofactor_(biochemistry)") +AnnotationAssertion(Annotation( "IUPAC") "cofactor") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "cofactors") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:23357") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cofactor") +SubClassOf( ) + +# Class: (molecular entity) + +AnnotationAssertion( "Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "entidad molecular") +AnnotationAssertion(Annotation( "IUPAC") "entidades moleculares") +AnnotationAssertion(Annotation( "IUPAC") "entite moleculaire") +AnnotationAssertion(Annotation( "IUPAC") "molecular entities") +AnnotationAssertion(Annotation( "ChEBI") "molekulare Entitaet") +AnnotationAssertion( "CHEBI:23367") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "molecular entity") +SubClassOf( ) + +# Class: (cyanides) + +AnnotationAssertion( "Salts and C-organyl derivatives of hydrogen cyanide, HC#N.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "cyanides") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:23424") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cyanides") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (drug) + +AnnotationAssertion( "Any substance which when absorbed into a living organism may modify one or more of its functions. The term is generally accepted for a substance taken for a therapeutic purpose, but is also commonly used for abused substances.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "drugs") +AnnotationAssertion(Annotation( "ChEBI") "medicine") +AnnotationAssertion( "CHEBI:23888") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "drug") +SubClassOf( ) + +# Class: (monoatomic anion) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "monoatomic anions") +AnnotationAssertion( "CHEBI:23905") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monoatomic anion") +SubClassOf( ) +SubClassOf( ) + +# Class: (monoatomic cation) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "monoatomic cations") +AnnotationAssertion( "CHEBI:23906") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monoatomic cation") +SubClassOf( ) +SubClassOf( ) + +# Class: (enzyme inhibitor) + +AnnotationAssertion( "A compound or agent that combines with an enzyme in such a manner as to prevent the normal substrate-enzyme combination and the catalytic reaction.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "enzyme inhibitor") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "enzyme inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "inhibidor enzimatico") +AnnotationAssertion(Annotation( "ChEBI") "inhibidores enzimaticos") +AnnotationAssertion(Annotation( "ChEBI") "inhibiteur enzymatique") +AnnotationAssertion(Annotation( "ChEBI") "inhibiteurs enzymatiques") +AnnotationAssertion( "CHEBI:23924") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "enzyme inhibitor") +SubClassOf( ) +SubClassOf( ) + +# Class: (ethanols) + +AnnotationAssertion( "Any primary alcohol based on an ethanol skeleton.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:23982") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ethanols") +SubClassOf( ) + +# Class: (fluoride salt) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "fluoride salts") +AnnotationAssertion(Annotation( "ChEBI") "fluorides") +AnnotationAssertion( "CHEBI:24060") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluoride salt") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (fluorine atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "F") +AnnotationAssertion( "InChI=1S/F") +AnnotationAssertion( "YCKRFDGAMUMZLT-UHFFFAOYSA-N") +AnnotationAssertion( "18.99840") +AnnotationAssertion( "18.99840") +AnnotationAssertion( "[F]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7782-41-4") +AnnotationAssertion( "WebElements:F") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "fluorine") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "9F") +AnnotationAssertion(Annotation( "IUPAC") "F") +AnnotationAssertion(Annotation( "ChemIDplus") "Fluor") +AnnotationAssertion(Annotation( "ChEBI") "fluor") +AnnotationAssertion(Annotation( "ChEBI") "fluorine") +AnnotationAssertion(Annotation( "ChEBI") "fluorum") +AnnotationAssertion( "CHEBI:24061") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluorine atom") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (fluorine molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "fluorine molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "fluorine compounds") +AnnotationAssertion(Annotation( "ChEBI") "fluorine molecular entities") +AnnotationAssertion( "CHEBI:24062") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluorine molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (fluoroalkane) + +AnnotationAssertion( "A haloalkane that is an alkane in which at least one hydrogen atom has been replaced by a fluorine atom.") +AnnotationAssertion(Annotation( "ChEBI") "fluoroalkane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "fluoroalkanes") +AnnotationAssertion( "CHEBI:24067") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluoroalkane") +SubClassOf( ) +SubClassOf( ) + +# Class: (formamides) + +AnnotationAssertion( "Amides with the general formula R(1)R(2)NCHO (R(1) and R(2) can be H).") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:24079") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "formamides") +SubClassOf( ) + +# Class: (chemical entity) + +AnnotationAssertion( "A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.") +AnnotationAssertion(Annotation( "UniProt") "chemical entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:24431") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chemical entity") + +# Class: (biological role) + +AnnotationAssertion( "A role played by the molecular entity or part thereof within a biological context.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "biological function") +AnnotationAssertion( "CHEBI:24432") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "biological role") +SubClassOf( ) + +# Class: (group) + +AnnotationAssertion( "A defined linked collection of atoms or a single atom within a molecular entity.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "group") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Gruppe") +AnnotationAssertion(Annotation( "ChEBI") "Rest") +AnnotationAssertion(Annotation( "IUPAC") "groupe") +AnnotationAssertion(Annotation( "IUPAC") "grupo") +AnnotationAssertion(Annotation( "IUPAC") "grupos") +AnnotationAssertion( "CHEBI:24433") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "group") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (haloalkane) + +AnnotationAssertion( "A halohydrocarbon that is an alkane in which at least one hydrogen atom has been replaced by with a halogen atom.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "alkyl halide") +AnnotationAssertion(Annotation( "ChEBI") "alkyl halides") +AnnotationAssertion(Annotation( "ChEBI") "haloalkanes") +AnnotationAssertion( "CHEBI:24469") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "haloalkane") +SubClassOf( ) + +# Class: (halogen molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "halogen molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "halogen compounds") +AnnotationAssertion(Annotation( "ChEBI") "halogen molecular entities") +AnnotationAssertion( "CHEBI:24471") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "halogen molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (halohydrocarbon) + +AnnotationAssertion( "A compound derived from a hydrocarbon by replacing a hydrogen atom with a halogen atom.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "halogenated hydrocarbons") +AnnotationAssertion(Annotation( "ChEBI") "halohydrocarbons") +AnnotationAssertion( "CHEBI:24472") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "halohydrocarbon") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (halogen) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "halogen") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "halogens") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Halogene") +AnnotationAssertion(Annotation( "ChEBI") "group 17 elements") +AnnotationAssertion(Annotation( "ChEBI") "group VII elements") +AnnotationAssertion(Annotation( "ChEBI") "halogene") +AnnotationAssertion(Annotation( "ChEBI") "halogenes") +AnnotationAssertion(Annotation( "ChEBI") "halogeno") +AnnotationAssertion(Annotation( "ChEBI") "halogenos") +AnnotationAssertion( "CHEBI:24473") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "halogen") +SubClassOf( ) +SubClassOf( ) + +# Class: (organic heterocyclic compound) + +AnnotationAssertion( "A cyclic compound having as ring members atoms of carbon and at least of one other element.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic heterocycle") +AnnotationAssertion(Annotation( "ChEBI") "organic heterocyclic compounds") +AnnotationAssertion( "CHEBI:24532") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic heterocyclic compound") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + +# Class: (hydrocarbon) + +AnnotationAssertion( "A compound consisting of carbon and hydrogen only.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydrocarbon") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydrocarbons") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Kohlenwasserstoff") +AnnotationAssertion(Annotation( "ChEBI") "Kohlenwasserstoffe") +AnnotationAssertion(Annotation( "IUPAC") "hidrocarburo") +AnnotationAssertion(Annotation( "IUPAC") "hidrocarburos") +AnnotationAssertion(Annotation( "IUPAC") "hydrocarbure") +AnnotationAssertion( "CHEBI:24632") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydrocarbon") +SubClassOf( ) + +# Class: (hydroxides) + +AnnotationAssertion( "Hydroxides are chemical compounds containing a hydroxy group or salts containing hydroxide (OH(-)).") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:24651") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydroxides") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (oxoacid) + +AnnotationAssertion( "A compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons).") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "oxoacid") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "oxoacids") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "oxacids") +AnnotationAssertion(Annotation( "ChEBI") "oxiacids") +AnnotationAssertion(Annotation( "ChEBI") "oxo acid") +AnnotationAssertion(Annotation( "ChEBI") "oxy-acids") +AnnotationAssertion(Annotation( "ChEBI") "oxyacids") +AnnotationAssertion( "CHEBI:24833") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oxoacid") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (inorganic anion) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "inorganic anions") +AnnotationAssertion( "CHEBI:24834") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "inorganic anion") +SubClassOf( ) +SubClassOf( ) + +# Class: (inorganic molecular entity) + +AnnotationAssertion( "A molecular entity that contains no carbon.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "anorganische Verbindungen") +AnnotationAssertion(Annotation( "ChEBI") "inorganic compounds") +AnnotationAssertion(Annotation( "ChEBI") "inorganic entity") +AnnotationAssertion(Annotation( "ChEBI") "inorganic molecular entities") +AnnotationAssertion(Annotation( "ChEBI") "inorganics") +AnnotationAssertion( "CHEBI:24835") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "inorganic molecular entity") +SubClassOf( ) + +# Class: (inorganic oxide) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "inorganic oxides") +AnnotationAssertion( "CHEBI:24836") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "inorganic oxide") +SubClassOf( ) +SubClassOf( ) + +# Class: (inorganic salt) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "anorganisches Salz") +AnnotationAssertion(Annotation( "ChEBI") "inorganic salts") +AnnotationAssertion( "CHEBI:24839") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "inorganic salt") +SubClassOf( ) +SubClassOf( ) + +# Class: (insect attractant) + +AnnotationAssertion( "A chemical that attracts insects.") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:7044287") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "insect attractants") +AnnotationAssertion( "CHEBI:24850") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "insect attractant") +SubClassOf( ) + +# Class: (salt) + +AnnotationAssertion( "A salt is an assembly of cations and anions.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "salt") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Salz") +AnnotationAssertion(Annotation( "ChEBI") "Salze") +AnnotationAssertion(Annotation( "ChEBI") "ionic compound") +AnnotationAssertion(Annotation( "ChEBI") "ionic compounds") +AnnotationAssertion(Annotation( "ChEBI") "sal") +AnnotationAssertion(Annotation( "ChEBI") "sales") +AnnotationAssertion(Annotation( "ChEBI") "salts") +AnnotationAssertion(Annotation( "ChEBI") "sel") +AnnotationAssertion(Annotation( "ChEBI") "sels") +AnnotationAssertion( "CHEBI:24866") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "salt") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (monoatomic ion) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "monoatomic ions") +AnnotationAssertion( "CHEBI:24867") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monoatomic ion") +SubClassOf( ) +SubClassOf( ) + +# Class: (organic salt) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic salts") +AnnotationAssertion(Annotation( "ChEBI") "organisches Salz") +AnnotationAssertion( "CHEBI:24868") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic salt") +SubClassOf( ) + +# Class: (ion) + +AnnotationAssertion( "A molecular entity having a net electric charge.") +AnnotationAssertion(Annotation( "ChEBI") "Ion") +AnnotationAssertion(Annotation( "ChEBI") "ion") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "ion") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Ionen") +AnnotationAssertion(Annotation( "ChEBI") "iones") +AnnotationAssertion(Annotation( "ChEBI") "ions") +AnnotationAssertion( "CHEBI:24870") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ion") +SubClassOf( ) + +# Class: (iron molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "iron molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "iron compounds") +AnnotationAssertion(Annotation( "ChEBI") "iron molecular entities") +AnnotationAssertion( "CHEBI:24873") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "iron molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (lead atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "Pb") +AnnotationAssertion( "InChI=1S/Pb") +AnnotationAssertion( "WABPQHHGFIMREM-UHFFFAOYSA-N") +AnnotationAssertion( "207.20000") +AnnotationAssertion( "207.97665") +AnnotationAssertion( "[Pb]") +AnnotationAssertion( "KEGG:C06696") +AnnotationAssertion( "WebElements:Pb") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "lead") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "82Pb") +AnnotationAssertion(Annotation( "ChEBI") "Blei") +AnnotationAssertion(Annotation( "IUPAC") "Pb") +AnnotationAssertion(Annotation( "ChEBI") "lead") +AnnotationAssertion(Annotation( "ChEBI") "plomb") +AnnotationAssertion(Annotation( "ChEBI") "plomo") +AnnotationAssertion(Annotation( "IUPAC") "plumbum") +AnnotationAssertion( "CHEBI:25016") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "lead atom") +SubClassOf( ) +SubClassOf( ) + +# Class: (mercury atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "Hg") +AnnotationAssertion( "InChI=1S/Hg") +AnnotationAssertion( "QSHDDOUJBYECFT-UHFFFAOYSA-N") +AnnotationAssertion( "200.59000") +AnnotationAssertion( "201.97064") +AnnotationAssertion( "[Hg]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7439-97-6") +AnnotationAssertion( "WebElements:Hg") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "mercury") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "80Hg") +AnnotationAssertion(Annotation( "IUPAC") "Hg") +AnnotationAssertion(Annotation( "ChemIDplus") "Quecksilber") +AnnotationAssertion(Annotation( "ChEBI") "azogue") +AnnotationAssertion(Annotation( "IUPAC") "hydrargyrum") +AnnotationAssertion(Annotation( "ChemIDplus") "liquid silver") +AnnotationAssertion(Annotation( "ChemIDplus") "mercure") +AnnotationAssertion(Annotation( "ChEBI") "mercurio") +AnnotationAssertion(Annotation( "ChEBI") "mercury") +AnnotationAssertion(Annotation( "ChemIDplus") "quicksilver") +AnnotationAssertion( "CHEBI:25195") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mercury atom") +SubClassOf( ) + +# Class: (mercury molecular entity) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "mercury compounds") +AnnotationAssertion(Annotation( "ChEBI") "mercury molecular entities") +AnnotationAssertion( "CHEBI:25196") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mercury molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (metabolite) + +AnnotationAssertion( "Any intermediate or product resulting from metabolism. The term 'metabolite' subsumes the classes commonly known as primary and secondary metabolites.") +AnnotationAssertion( "CHEBI:26619") +AnnotationAssertion( "CHEBI:35220") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "metabolite") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "metabolites") +AnnotationAssertion(Annotation( "ChEBI") "primary metabolites") +AnnotationAssertion(Annotation( "ChEBI") "secondary metabolites") +AnnotationAssertion( "CHEBI:25212") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "metabolite") +SubClassOf( ) + +# Class: (metal cation) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "UniProt") "a metal cation") +AnnotationAssertion(Annotation( "ChEBI") "metal cations") +AnnotationAssertion( "CHEBI:25213") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "metal cation") +SubClassOf( ) +SubClassOf( ) + +# Class: (methylmercury compound) + +AnnotationAssertion( "An alkylmercury compound in which the alkyl group specified is methyl.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "methylmercury compounds") +AnnotationAssertion( "CHEBI:25322") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "methylmercury compound") +SubClassOf( ) + +# Class: (mitochondrial respiratory-chain inhibitor) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "mitochondrial electron transport chain inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "mitochondrial electron-transport chain inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "mitochondrial respiratory chain inhibitors") +AnnotationAssertion( "CHEBI:25355") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mitochondrial respiratory-chain inhibitor") +SubClassOf( ) + +# Class: (molecule) + +AnnotationAssertion( "Any polyatomic entity that is an electrically neutral entity consisting of more than one atom.") +AnnotationAssertion(Annotation( "IUPAC") "molecule") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Molekuel") +AnnotationAssertion(Annotation( "IUPAC") "molecula") +AnnotationAssertion(Annotation( "IUPAC") "molecules") +AnnotationAssertion(Annotation( "IUPAC") "neutral molecular compounds") +AnnotationAssertion( "CHEBI:25367") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "molecule") +SubClassOf( ) + +# Class: (monocarboxylic acid) + +AnnotationAssertion( "An oxoacid containing a single carboxy group.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "monocarboxylic acids") +AnnotationAssertion( "CHEBI:25384") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monocarboxylic acid") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (monoatomic monocation) + +AnnotationAssertion( "+1") +AnnotationAssertion( "0.00000") +AnnotationAssertion( "[*+]") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "monoatomic monocations") +AnnotationAssertion(Annotation( "ChEBI") "monovalent inorganic cations") +AnnotationAssertion( "CHEBI:25414") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monoatomic monocation") +SubClassOf( ) + +# Class: (nitrogen atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "N") +AnnotationAssertion( "14.007") +AnnotationAssertion( "14.00307") +AnnotationAssertion( "WebElements:N") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "nitrogen") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "7N") +AnnotationAssertion(Annotation( "IUPAC") "N") +AnnotationAssertion(Annotation( "ChEBI") "Stickstoff") +AnnotationAssertion(Annotation( "IUPAC") "azote") +AnnotationAssertion(Annotation( "ChEBI") "nitrogen") +AnnotationAssertion(Annotation( "ChEBI") "nitrogeno") +AnnotationAssertion( "CHEBI:25555") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nitrogen atom") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (nonmetal atom) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "nonmetal") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Nichtmetall") +AnnotationAssertion(Annotation( "ChEBI") "Nichtmetalle") +AnnotationAssertion(Annotation( "ChEBI") "no metal") +AnnotationAssertion(Annotation( "ChEBI") "no metales") +AnnotationAssertion(Annotation( "ChEBI") "non-metal") +AnnotationAssertion(Annotation( "ChEBI") "non-metaux") +AnnotationAssertion(Annotation( "ChEBI") "nonmetal") +AnnotationAssertion(Annotation( "ChEBI") "nonmetals") +AnnotationAssertion( "CHEBI:25585") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nonmetal atom") +SubClassOf( ) + +# Class: (organic heteromonocyclic compound) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic heteromonocyclic compounds") +AnnotationAssertion( "CHEBI:25693") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic heteromonocyclic compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (organic anion) + +AnnotationAssertion( "Any organic ion with a net negative charge.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic anions") +AnnotationAssertion( "CHEBI:25696") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic anion") +SubClassOf( ) +SubClassOf( ) + +# Class: (organic cation) + +AnnotationAssertion( "Any organic ion with a net positive charge.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic cations") +AnnotationAssertion( "CHEBI:25697") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic cation") +SubClassOf( ) +SubClassOf( ) + +# Class: (ether) + +AnnotationAssertion( "An organooxygen compound with formula ROR, where R is not hydrogen.") +AnnotationAssertion( "0") +AnnotationAssertion( "OR2") +AnnotationAssertion( "15.99940") +AnnotationAssertion( "15.99491") +AnnotationAssertion( "[*]O[*]") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "ether") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "ethers") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "ethers") +AnnotationAssertion( "CHEBI:25698") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ether") +SubClassOf( ) + +# Class: (organic ion) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic ions") +AnnotationAssertion( "CHEBI:25699") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic ion") +SubClassOf( ) +SubClassOf( ) + +# Class: (organic phosphate) + +AnnotationAssertion( "Wikipedia:Organophosphate") +AnnotationAssertion(Annotation( "ChEBI") "organic phosphate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic phosphate ester") +AnnotationAssertion(Annotation( "ChEBI") "organic phosphate esters") +AnnotationAssertion(Annotation( "ChEBI") "organic phosphates") +AnnotationAssertion(Annotation( "ChEBI") "organophosphate ester") +AnnotationAssertion(Annotation( "ChEBI") "organophosphate esters") +AnnotationAssertion( "CHEBI:25703") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic phosphate") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + +# Class: (organomercury compound) + +AnnotationAssertion( "A compound containing at least one carbon-mercury bond.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organomercury compounds") +AnnotationAssertion( "CHEBI:25706") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organomercury compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (organometallic compound) + +AnnotationAssertion( "A compound having bonds between one or more metal atoms and one or more carbon atoms of an organyl group.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "organometallic compounds") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "metalloorganic compounds") +AnnotationAssertion(Annotation( "ChEBI") "metalloorganics") +AnnotationAssertion(Annotation( "ChEBI") "metalorganic compounds") +AnnotationAssertion(Annotation( "ChEBI") "organometallics") +AnnotationAssertion( "CHEBI:25707") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organometallic compound") +SubClassOf( ) + +# Class: (aliphatic alcohol) + +AnnotationAssertion( "An alcohol derived from an aliphatic compound.") +AnnotationAssertion( "0") +AnnotationAssertion( "HOR") +AnnotationAssertion( "17.007") +AnnotationAssertion( "17.00274") +AnnotationAssertion( "O*") +AnnotationAssertion( "KEGG:C02525") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Aliphatic alcohol") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "aliphatic alcohols") +AnnotationAssertion(Annotation( "UniProt") "an aliphatic alcohol") +AnnotationAssertion( "CHEBI:2571") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "aliphatic alcohol") +SubClassOf( ) + +# Class: (organophosphorus compound) + +AnnotationAssertion( "An organophosphorus compound is formally a compound containing at least one carbon-phosphorus bond, but the term is often extended to include esters and thioesters.") +AnnotationAssertion( "Wikipedia:Organophosphorus_compound") +AnnotationAssertion(Annotation( "ChEBI") "organophosphorus compound") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organophosphorus compounds") +AnnotationAssertion( "CHEBI:25710") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organophosphorus compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (organoselenium compound) + +AnnotationAssertion( "An organoselenium compound is a compound containing at least one carbon-selenium bond.") +AnnotationAssertion(Annotation( "ChEBI") "organoselenium compound") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organoselenium compounds") +AnnotationAssertion( "CHEBI:25712") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organoselenium compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (organosilicon compound) + +AnnotationAssertion( "An organosilicon compound is a compound containing at least one carbon-silicon bond.") +AnnotationAssertion(Annotation( "ChEBI") "organosilicon compound") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organosilicon compounds") +AnnotationAssertion(Annotation( "ChEBI") "silicoorganic compounds") +AnnotationAssertion( "CHEBI:25713") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organosilicon compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (organotin compound) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organotin compounds") +AnnotationAssertion(Annotation( "ChEBI") "stannanes") +AnnotationAssertion( "CHEBI:25717") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organotin compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (oxide) + +AnnotationAssertion( "An oxide is a chemical compound of oxygen with other chemical elements.") +AnnotationAssertion(Annotation( "ChEBI") "oxide") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "oxides") +AnnotationAssertion( "CHEBI:25741") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oxide") +SubClassOf( ) +SubClassOf( ) + +# Class: (oxime) + +AnnotationAssertion( "Compounds of structure R2C=NOH derived from condensation of aldehydes or ketones with hydroxylamine. Oximes from aldehydes may be called aldoximes; those from ketones may be called ketoximes.") +AnnotationAssertion( "0") +AnnotationAssertion( "CHNOR2") +AnnotationAssertion( "43.02470") +AnnotationAssertion( "43.00581") +AnnotationAssertion( "O\\N=C(\\[*])[*]") +AnnotationAssertion(Annotation( "IUPAC") "oxime") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "oximes") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "oximes") +AnnotationAssertion( "CHEBI:25750") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oxime") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (oxygen atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "O") +AnnotationAssertion( "InChI=1S/O") +AnnotationAssertion( "QVGXLLKOCUKJST-UHFFFAOYSA-N") +AnnotationAssertion( "15.99940") +AnnotationAssertion( "15.99491") +AnnotationAssertion( "[O]") +AnnotationAssertion( "KEGG:C00007") +AnnotationAssertion( "WebElements:O") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "oxygen") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "8O") +AnnotationAssertion(Annotation( "IUPAC") "O") +AnnotationAssertion(Annotation( "ChEBI") "Sauerstoff") +AnnotationAssertion(Annotation( "ChEBI") "oxigeno") +AnnotationAssertion(Annotation( "ChEBI") "oxygen") +AnnotationAssertion(Annotation( "ChEBI") "oxygene") +AnnotationAssertion( "CHEBI:25805") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oxygen atom") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (oxygen molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "oxygen molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "oxygen molecular entities") +AnnotationAssertion( "CHEBI:25806") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oxygen molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (phosphate) + +AnnotationAssertion( "Salts and esters of phosphoric and oligophosphoric acids and their chalcogen analogues. In inorganic chemistry, the term is also used to describe anionic coordination entities with phosphorus as central atom.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "phosphates") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "phosphates") +AnnotationAssertion( "CHEBI:26020") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "phosphate") +SubClassOf( ) + +# Class: (phosphoric acid) + +AnnotationAssertion( "A phosphorus oxoacid that consists of one oxo and three hydroxy groups joined covalently to a central phosphorus atom.") +AnnotationAssertion( "0") +AnnotationAssertion( "H3O4P") +AnnotationAssertion( "InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)") +AnnotationAssertion( "NBIIXXVUZAFLBC-UHFFFAOYSA-N") +AnnotationAssertion( "97.99520") +AnnotationAssertion( "97.97690") +AnnotationAssertion( "[H]OP(=O)(O[H])O[H]") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1921286") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7664-38-2") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:7664-38-2") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7664-38-2") +AnnotationAssertion(Annotation( "DrugCentral") "Drug_Central:4478") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:2000") +AnnotationAssertion( "HMDB:HMDB0002142") +AnnotationAssertion( "KEGG:C00009") +AnnotationAssertion( "KEGG:D05467") +AnnotationAssertion( "KNApSAcK:C00007408") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:11455380") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:15630224") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17439666") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17518491") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22282755") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22333268") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22381614") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22401268") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1921286") +AnnotationAssertion( "Wikipedia:Phosphoric_Acid") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Phosphoric acid") +AnnotationAssertion(Annotation( "IUPAC") "phosphoric acid") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "tetraoxophosphoric acid") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "trihydrogen tetraoxophosphate(3-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "trihydroxidooxidophosphorus") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "H3PO4") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Orthophosphoric acid") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Phosphate") +AnnotationAssertion(Annotation( "ChEBI") "Phosphorsaeure") +AnnotationAssertion(Annotation( "ChEBI") "Phosphorsaeureloesungen") +AnnotationAssertion(Annotation( "IUPAC") "[PO(OH)3]") +AnnotationAssertion(Annotation( "ChEBI") "acide phosphorique") +AnnotationAssertion(Annotation( "ChEBI") "acidum phosphoricum") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "orthophosphoric acid") +AnnotationAssertion( "CHEBI:26078") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "phosphoric acid") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (phosphoric acid derivative) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:26079") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "phosphoric acid derivative") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (phosphorus molecular entity) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "phosphorus molecular entities") +AnnotationAssertion( "CHEBI:26082") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "phosphorus molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (potassium atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "K") +AnnotationAssertion( "InChI=1S/K") +AnnotationAssertion( "ZLMJMSJWJFRBEC-UHFFFAOYSA-N") +AnnotationAssertion( "39.09830") +AnnotationAssertion( "38.96371") +AnnotationAssertion( "[K]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7440-09-7") +AnnotationAssertion( "DrugBank:DB01345") +AnnotationAssertion( "KEGG:C00238") +AnnotationAssertion( "WebElements:K") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "potassium") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "19K") +AnnotationAssertion(Annotation( "IUPAC") "K") +AnnotationAssertion(Annotation( "ChemIDplus") "Kalium") +AnnotationAssertion(Annotation( "IUPAC") "kalium") +AnnotationAssertion(Annotation( "ChEBI") "potasio") +AnnotationAssertion(Annotation( "ChEBI") "potassium") +AnnotationAssertion( "CHEBI:26216") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "potassium atom") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (potassium molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "potassium molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "potassium molecular entities") +AnnotationAssertion( "CHEBI:26217") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "potassium molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (potassium salt) + +AnnotationAssertion( "Any alkali metal salt having potassium(1+) as the cation.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Kaliumsalz") +AnnotationAssertion(Annotation( "ChEBI") "Kaliumsalze") +AnnotationAssertion(Annotation( "ChEBI") "potassium salts") +AnnotationAssertion( "CHEBI:26218") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "potassium salt") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (propanones) + +AnnotationAssertion( "A ketone that is propane carrying at least one oxo substituent.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:26292") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "propanones") +SubClassOf( ) + +# Class: (pyridines) + +AnnotationAssertion( "Any organonitrogen heterocyclic compound based on a pyridine skeleton and its substituted derivatives.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:26421") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "pyridines") +SubClassOf( ) +SubClassOf( ) + +# Class: (quaternary nitrogen compound) + +AnnotationAssertion( "A nitrogen molecular entity that is electronically neutral but which contains a quaternary nitrogen.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:26469") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "quaternary nitrogen compound") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (saturated fatty acid) + +AnnotationAssertion( "Any fatty acid containing no carbon to carbon multiple bonds. Known to produce adverse biological effects when ingested to excess.") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16492686") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:19763019") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:20237329") +AnnotationAssertion(Annotation( "ChEBI") "saturated fatty acid") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "SFA") +AnnotationAssertion(Annotation( "ChEBI") "SFAs") +AnnotationAssertion(Annotation( "ChEBI") "saturated fatty acids") +AnnotationAssertion( "CHEBI:26607") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "saturated fatty acid") +SubClassOf( ) + +# Class: (selenium molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "selenium molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "selenium molecular entities") +AnnotationAssertion( "CHEBI:26628") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "selenium molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (short-chain fatty acid) + +AnnotationAssertion( "An aliphatic monocarboxylic acid with a chain length of less than C6. If any non-hydrocarbon substituent is present, the compound is not normally regarded as a short-chain fatty acid.") +AnnotationAssertion( "0") +AnnotationAssertion( "CH2OR") +AnnotationAssertion( "45.017") +AnnotationAssertion( "44.99765") +AnnotationAssertion( "OC([*])=O") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16633129") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16870803") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:18203540") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:20148677") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "SCFA") +AnnotationAssertion(Annotation( "ChEBI") "SCFAs") +AnnotationAssertion(Annotation( "ChEBI") "short-chain fatty acids") +AnnotationAssertion( "CHEBI:26666") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "short-chain fatty acid") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (silicon molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "silicon molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "silicon compounds") +AnnotationAssertion(Annotation( "ChEBI") "silicon molecular entities") +AnnotationAssertion( "CHEBI:26677") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "silicon molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (sodium atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "Na") +AnnotationAssertion( "InChI=1S/Na") +AnnotationAssertion( "KEAYESYHFKHZAL-UHFFFAOYSA-N") +AnnotationAssertion( "22.98977") +AnnotationAssertion( "22.98977") +AnnotationAssertion( "[Na]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7440-23-5") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:16221") +AnnotationAssertion( "KEGG:C01330") +AnnotationAssertion( "WebElements:Na") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "sodium") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "11Na") +AnnotationAssertion(Annotation( "IUPAC") "Na") +AnnotationAssertion(Annotation( "ChemIDplus") "Natrium") +AnnotationAssertion(Annotation( "IUPAC") "natrium") +AnnotationAssertion(Annotation( "ChemIDplus") "sodio") +AnnotationAssertion(Annotation( "ChEBI") "sodium") +AnnotationAssertion( "CHEBI:26708") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sodium atom") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (sodium molecular entity) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "sodium compounds") +AnnotationAssertion(Annotation( "ChEBI") "sodium molecular entities") +AnnotationAssertion( "CHEBI:26712") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sodium molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (sodium salt) + +AnnotationAssertion( "Any alkali metal salt having sodium(1+) as the cation.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Natriumsalz") +AnnotationAssertion(Annotation( "ChEBI") "Natriumsalze") +AnnotationAssertion(Annotation( "ChEBI") "sodium salts") +AnnotationAssertion( "CHEBI:26714") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sodium salt") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (sulfur atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "S") +AnnotationAssertion( "InChI=1S/S") +AnnotationAssertion( "NINIDFKCEFEMDL-UHFFFAOYSA-N") +AnnotationAssertion( "32.06600") +AnnotationAssertion( "31.97207") +AnnotationAssertion( "[S]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7704-34-9") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7704-34-9") +AnnotationAssertion( "KEGG:C00087") +AnnotationAssertion( "KEGG:D06527") +AnnotationAssertion( "PPDB:605") +AnnotationAssertion( "WebElements:S") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "sulfur") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "16S") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Elemental sulfur") +AnnotationAssertion(Annotation( "IUPAC") "S") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "S") +AnnotationAssertion(Annotation( "ChEBI") "Schwefel") +AnnotationAssertion(Annotation( "ChEBI") "azufre") +AnnotationAssertion(Annotation( "ChEBI") "soufre") +AnnotationAssertion(Annotation( "ChEBI") "sulfur") +AnnotationAssertion(Annotation( "UniProt") "sulfur") +AnnotationAssertion(Annotation( "ChEBI") "sulphur") +AnnotationAssertion(Annotation( "IUPAC") "theion") +AnnotationAssertion( "CHEBI:26833") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sulfur atom") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (sulfur molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "sulfur molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "sulfur molecular entities") +AnnotationAssertion( "CHEBI:26835") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sulfur molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (oxolanes) + +AnnotationAssertion( "Any oxacycle having an oxolane (tetrahydrofuran) skeleton.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:26912") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oxolanes") +SubClassOf( ) +SubClassOf( ) + +# Class: (tin atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "Sn") +AnnotationAssertion( "InChI=1S/Sn") +AnnotationAssertion( "ATJFFYVFTNAWJD-UHFFFAOYSA-N") +AnnotationAssertion( "118.71000") +AnnotationAssertion( "119.90220") +AnnotationAssertion( "[Sn]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7440-31-5") +AnnotationAssertion(Annotation( "UM-BBD") "UM-BBD_compID:c0585") +AnnotationAssertion( "WebElements:Sn") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "tin") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "50Sn") +AnnotationAssertion(Annotation( "IUPAC") "Sn") +AnnotationAssertion(Annotation( "ChemIDplus") "Zinn") +AnnotationAssertion(Annotation( "ChEBI") "estano") +AnnotationAssertion(Annotation( "ChEBI") "etain") +AnnotationAssertion(Annotation( "IUPAC") "stannum") +AnnotationAssertion(Annotation( "ChEBI") "tin") +AnnotationAssertion( "CHEBI:27007") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tin atom") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (tin molecular entity) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "tin compounds") +AnnotationAssertion(Annotation( "ChEBI") "tin molecular entities") +AnnotationAssertion( "CHEBI:27008") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tin molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (toluenes) + +AnnotationAssertion( "Any member of the class of benzenes that is a substituted benzene in which the substituents include one (and only one) methyl group.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:27024") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "toluenes") +SubClassOf( ) + +# Class: (micronutrient) + +AnnotationAssertion( "Any nutrient required in small quantities by organisms throughout their life in order to orchestrate a range of physiological functions.") +AnnotationAssertion( "Wikipedia:Micronutrient") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "micronutrients") +AnnotationAssertion(Annotation( "ChEBI") "trace elements") +AnnotationAssertion( "CHEBI:27027") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "micronutrient") +SubClassOf( ) + +# Class: (transition element atom) + +AnnotationAssertion( "An element whose atom has an incomplete d sub-shell, or which can give rise to cations with an incomplete d sub-shell.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "transition element") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Uebergangselement") +AnnotationAssertion(Annotation( "ChEBI") "Uebergangsmetalle") +AnnotationAssertion(Annotation( "ChEBI") "metal de transicion") +AnnotationAssertion(Annotation( "ChEBI") "metal de transition") +AnnotationAssertion(Annotation( "ChEBI") "metales de transicion") +AnnotationAssertion(Annotation( "ChEBI") "metaux de transition") +AnnotationAssertion(Annotation( "ChEBI") "transition element") +AnnotationAssertion(Annotation( "ChEBI") "transition elements") +AnnotationAssertion(Annotation( "ChEBI") "transition metal") +AnnotationAssertion(Annotation( "ChEBI") "transition metals") +AnnotationAssertion( "CHEBI:27081") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "transition element atom") +SubClassOf( ) + +# Class: (trifluoroacetate) + +AnnotationAssertion( "-1") +AnnotationAssertion( "C2F3O2") +AnnotationAssertion( "InChI=1S/C2HF3O2/c3-2(4,5)1(6)7/h(H,6,7)/p-1") +AnnotationAssertion( "DTQVDTLACAAQTR-UHFFFAOYSA-M") +AnnotationAssertion( "113.01541") +AnnotationAssertion( "112.98559") +AnnotationAssertion( "[O-]C(=O)C(F)(F)F") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:14477-72-6") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:14477-72-6") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:82342") +AnnotationAssertion(Annotation( "UM-BBD") "UM-BBD_compID:c0799") +AnnotationAssertion(Annotation( "ChEBI") "trifluoroacetate") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "trifluoroacetate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "CF3CO2 anion") +AnnotationAssertion(Annotation( "ChEBI") "CF3COO(-)") +AnnotationAssertion(Annotation( "IUPAC") "tfa") +AnnotationAssertion(Annotation( "ChemIDplus") "trifluoroacetic acid, ion(1-)") +AnnotationAssertion( "CHEBI:27110") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "trifluoroacetate") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (univalent carboacyl group) + +AnnotationAssertion( "A univalent carboacyl group is a group formed by loss of OH from the carboxy group of a carboxylic acid.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "univalent acyl group") +AnnotationAssertion(Annotation( "ChEBI") "univalent carboacyl groups") +AnnotationAssertion(Annotation( "ChEBI") "univalent carboxylic acyl groups") +AnnotationAssertion( "CHEBI:27207") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "univalent carboacyl group") +SubClassOf( ) + +# Class: (boron atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "B") +AnnotationAssertion( "InChI=1S/B") +AnnotationAssertion( "ZOXJGFHDIHLPTG-UHFFFAOYSA-N") +AnnotationAssertion( "10.81100") +AnnotationAssertion( "11.00930") +AnnotationAssertion( "[B]") +AnnotationAssertion( "CHEBI:22915") +AnnotationAssertion( "CHEBI:3152") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7440-42-8") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:7440-42-8") +AnnotationAssertion( "KEGG:C06266") +AnnotationAssertion( "WebElements:B") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "boron") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "5B") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "B") +AnnotationAssertion(Annotation( "ChEBI") "Bor") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Boron") +AnnotationAssertion(Annotation( "ChEBI") "boracium") +AnnotationAssertion(Annotation( "ChEBI") "bore") +AnnotationAssertion(Annotation( "ChEBI") "boro") +AnnotationAssertion(Annotation( "ChEBI") "boron") +AnnotationAssertion( "CHEBI:27560") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "boron atom") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (selenium atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "Se") +AnnotationAssertion( "InChI=1S/Se") +AnnotationAssertion( "BUGBHKTXTAQXES-UHFFFAOYSA-N") +AnnotationAssertion( "78.96000") +AnnotationAssertion( "79.91652") +AnnotationAssertion( "[Se]") +AnnotationAssertion( "CHEBI:26627") +AnnotationAssertion( "CHEBI:9091") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7782-49-2") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7782-49-2") +AnnotationAssertion( "DrugBank:DB11135") +AnnotationAssertion( "FooDB:FDB013400") +AnnotationAssertion( "HMDB:HMDB0001349") +AnnotationAssertion( "KEGG:C01529") +AnnotationAssertion( "WebElements:Se") +AnnotationAssertion( "Wikipedia:Selenium") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "selenium") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "34Se") +AnnotationAssertion(Annotation( "IUPAC") "Se") +AnnotationAssertion(Annotation( "ChemIDplus") "Selen") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Selenium") +AnnotationAssertion(Annotation( "ChEBI") "selenio") +AnnotationAssertion(Annotation( "ChEBI") "selenium") +AnnotationAssertion( "CHEBI:27568") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "selenium atom") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (silicon atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "Si") +AnnotationAssertion( "InChI=1S/Si") +AnnotationAssertion( "XUIMIQQOPSSXEZ-UHFFFAOYSA-N") +AnnotationAssertion( "28.08550") +AnnotationAssertion( "27.97693") +AnnotationAssertion( "[Si]") +AnnotationAssertion( "CHEBI:26676") +AnnotationAssertion( "CHEBI:9140") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7440-21-3") +AnnotationAssertion( "KEGG:C06263") +AnnotationAssertion( "WebElements:Si") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "silicon") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "14Si") +AnnotationAssertion(Annotation( "IUPAC") "Si") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Si") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Silicon") +AnnotationAssertion(Annotation( "ChEBI") "Silizium") +AnnotationAssertion(Annotation( "ChEBI") "silicio") +AnnotationAssertion(Annotation( "ChEBI") "silicium") +AnnotationAssertion(Annotation( "ChEBI") "silicon") +AnnotationAssertion( "CHEBI:27573") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "silicon atom") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + +# Class: (carbon atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "C") +AnnotationAssertion( "InChI=1S/C") +AnnotationAssertion( "OKTJSMMVPCPJKN-UHFFFAOYSA-N") +AnnotationAssertion( "12.01070") +AnnotationAssertion( "12.00000") +AnnotationAssertion( "[C]") +AnnotationAssertion( "CHEBI:23009") +AnnotationAssertion( "CHEBI:3399") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7440-44-0") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:7440-44-0") +AnnotationAssertion( "KEGG:C06265") +AnnotationAssertion( "WebElements:C") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "carbon") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "6C") +AnnotationAssertion(Annotation( "IUPAC") "C") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "C") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Carbon") +AnnotationAssertion(Annotation( "ChEBI") "Kohlenstoff") +AnnotationAssertion(Annotation( "ChEBI") "carbon") +AnnotationAssertion(Annotation( "ChEBI") "carbone") +AnnotationAssertion(Annotation( "ChEBI") "carbonium") +AnnotationAssertion(Annotation( "ChEBI") "carbono") +AnnotationAssertion( "CHEBI:27594") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "carbon atom") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (tungsten) + +AnnotationAssertion( "0") +AnnotationAssertion( "W") +AnnotationAssertion( "InChI=1S/W") +AnnotationAssertion( "WFKWXMTUELFFGS-UHFFFAOYSA-N") +AnnotationAssertion( "183.84000") +AnnotationAssertion( "183.95093") +AnnotationAssertion( "[W]") +AnnotationAssertion( "CHEBI:27170") +AnnotationAssertion( "CHEBI:9779") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7440-33-7") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:7440-33-7") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7440-33-7") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:16317") +AnnotationAssertion( "KEGG:C00753") +AnnotationAssertion( "PDBeChem:W") +AnnotationAssertion( "WebElements:W") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Tungsten") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "tungsten") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "wolfram") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "74W") +AnnotationAssertion(Annotation( "IUPAC") "W") +AnnotationAssertion(Annotation( "UniProt") "W") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "Wolfram") +AnnotationAssertion(Annotation( "ChEBI") "tungsten atom") +AnnotationAssertion(Annotation( "ChEBI") "tungstene") +AnnotationAssertion(Annotation( "ChEBI") "tungsteno") +AnnotationAssertion(Annotation( "ChEBI") "volframio") +AnnotationAssertion(Annotation( "ChEBI") "wolframio") +AnnotationAssertion(Annotation( "ChEBI") "wolframium") +AnnotationAssertion( "CHEBI:27998") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tungsten") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (carbamic acid) + +AnnotationAssertion( "A one-carbon compound that is ammonia in which one of the hydrogens is replaced by a carboxy group. Although carbamic acid derivatives are common, carbamic acid itself has never been synthesised.") +AnnotationAssertion( "0") +AnnotationAssertion( "CH3NO2") +AnnotationAssertion( "InChI=1S/CH3NO2/c2-1(3)4/h2H2,(H,3,4)") +AnnotationAssertion( "KXDHJXZQYSOELW-UHFFFAOYSA-N") +AnnotationAssertion( "61.04006") +AnnotationAssertion( "61.01638") +AnnotationAssertion( "NC(O)=O") +AnnotationAssertion( "CHEBI:22504") +AnnotationAssertion( "CHEBI:23002") +AnnotationAssertion( "CHEBI:3386") +AnnotationAssertion( "CHEBI:44573") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1734754") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:463-77-4") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:463-77-4") +AnnotationAssertion( "DrugBank:DB04261") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:130345") +AnnotationAssertion( "KEGG:C01563") +AnnotationAssertion( "PDBeChem:OUT") +AnnotationAssertion( "Wikipedia:Carbamic_acid") +AnnotationAssertion(Annotation( "PDBeChem") "CARBAMIC ACID") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Carbamic acid") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "carbamic acid") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Aminoameisensaeure") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Aminoformic acid") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Carbamate") +AnnotationAssertion(Annotation( "ChEBI") "Carbamidsaeure") +AnnotationAssertion( "CHEBI:28616") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "carbamic acid") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (phosphorus atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "P") +AnnotationAssertion( "InChI=1S/P") +AnnotationAssertion( "OAICVXFJPJFONN-UHFFFAOYSA-N") +AnnotationAssertion( "30.97376") +AnnotationAssertion( "30.97376") +AnnotationAssertion( "[P]") +AnnotationAssertion( "CHEBI:26080") +AnnotationAssertion( "CHEBI:8168") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7723-14-0") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:7723-14-0") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:16235") +AnnotationAssertion( "KEGG:C06262") +AnnotationAssertion( "WebElements:P") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "phosphorus") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "15P") +AnnotationAssertion(Annotation( "IUPAC") "P") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "P") +AnnotationAssertion(Annotation( "ChEBI") "Phosphor") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Phosphorus") +AnnotationAssertion(Annotation( "ChEBI") "fosforo") +AnnotationAssertion(Annotation( "ChEBI") "phosphore") +AnnotationAssertion(Annotation( "ChEBI") "phosphorus") +AnnotationAssertion( "CHEBI:28659") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "phosphorus atom") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (fatty acid anion) + +AnnotationAssertion( "The conjugate base of a fatty acid, arising from deprotonation of the carboxylic acid group of the corresponding fatty acid.") +AnnotationAssertion( "-1") +AnnotationAssertion( "CO2R") +AnnotationAssertion( "44.00950") +AnnotationAssertion( "43.98983") +AnnotationAssertion( "[O-]C([*])=O") +AnnotationAssertion( "CHEBI:13634") +AnnotationAssertion( "CHEBI:24022") +AnnotationAssertion( "CHEBI:4985") +AnnotationAssertion( "KEGG:C02403") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:18628202") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Fatty acid anion") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Alkanate") +AnnotationAssertion(Annotation( "ChEBI") "Fettsaeureanion") +AnnotationAssertion(Annotation( "ChEBI") "Fettsaeureanionen") +AnnotationAssertion(Annotation( "UniProt") "a fatty acid") +AnnotationAssertion(Annotation( "ChEBI") "acido graso anionico") +AnnotationAssertion(Annotation( "ChEBI") "acidos grasos anionicos") +AnnotationAssertion(Annotation( "ChEBI") "anion de l'acide gras") +AnnotationAssertion(Annotation( "ChEBI") "fatty acid anions") +AnnotationAssertion( "CHEBI:28868") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fatty acid anion") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (ammonium) + +AnnotationAssertion( "An onium cation obtained by protonation of ammonia.") +AnnotationAssertion( "+1") +AnnotationAssertion( "H4N") +AnnotationAssertion( "InChI=1S/H3N/h1H3/p+1") +AnnotationAssertion( "QGZKDVFQNNGYKY-UHFFFAOYSA-O") +AnnotationAssertion( "18.03850") +AnnotationAssertion( "18.03383") +AnnotationAssertion( "[H][N+]([H])([H])[H]") +AnnotationAssertion( "CHEBI:22534") +AnnotationAssertion( "CHEBI:49783") +AnnotationAssertion( "CHEBI:7435") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:14798-03-9") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:14798-03-9") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:84") +AnnotationAssertion( "KEGG:C01342") +AnnotationAssertion( "MetaCyc:AMMONIUM") +AnnotationAssertion( "MolBase:929") +AnnotationAssertion( "PDBeChem:NH4") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:11319011") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:11341317") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:12096804") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:14512268") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:14879753") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16345391") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16903292") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17392693") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:18515490") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:19199063") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:19596600") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:19682559") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:19716251") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:21993530") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22265469") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22524020") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22562341") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22631217") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:16093784") +AnnotationAssertion( "Wikipedia:Ammonium") +AnnotationAssertion(Annotation( "ChEBI") "ammonium") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "ammonium") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "azanium") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChemIDplus") "Ammonium(1+)") +AnnotationAssertion(Annotation( "IUPAC") "NH4(+)") +AnnotationAssertion(Annotation( "UniProt") "NH4(+)") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "NH4+") +AnnotationAssertion(Annotation( "MolBase") "[NH4](+)") +AnnotationAssertion(Annotation( "ChemIDplus") "ammonium cation") +AnnotationAssertion(Annotation( "PDBeChem") "ammonium ion") +AnnotationAssertion( "CHEBI:28938") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ammonium") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (carboxylic acid anion) + +AnnotationAssertion( "The conjugate base formed when the carboxy group of a carboxylic acid is deprotonated.") +AnnotationAssertion( "-1") +AnnotationAssertion( "CO2R") +AnnotationAssertion( "44.00950") +AnnotationAssertion( "43.98983") +AnnotationAssertion( "[O-]C([*])=O") +AnnotationAssertion( "CHEBI:13626") +AnnotationAssertion( "CHEBI:13945") +AnnotationAssertion( "CHEBI:23026") +AnnotationAssertion( "CHEBI:58657") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "UniProt") "a carboxylate") +AnnotationAssertion(Annotation( "ChEBI") "carboxylic acid anions") +AnnotationAssertion(Annotation( "ChEBI") "carboxylic anions") +AnnotationAssertion( "CHEBI:29067") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "carboxylic acid anion") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (sodium(1+)) + +AnnotationAssertion( "A monoatomic monocation obtained from sodium.") +AnnotationAssertion( "+1") +AnnotationAssertion( "Na") +AnnotationAssertion( "InChI=1S/Na/q+1") +AnnotationAssertion( "FKNQFGJONOIPTF-UHFFFAOYSA-N") +AnnotationAssertion( "22.98977") +AnnotationAssertion( "22.98922") +AnnotationAssertion( "[Na+]") +AnnotationAssertion( "CHEBI:26717") +AnnotationAssertion( "CHEBI:49766") +AnnotationAssertion( "CHEBI:9175") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:17341-25-2") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:17341-25-2") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:15196") +AnnotationAssertion( "KEGG:C01330") +AnnotationAssertion( "PDBeChem:NA") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "sodium cation") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "sodium(1+)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "sodium(1+) ion") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "sodium(I) cation") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "Na(+)") +AnnotationAssertion(Annotation( "UniProt") "Na(+)") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Na+") +AnnotationAssertion(Annotation( "PDBeChem") "SODIUM ION") +AnnotationAssertion( "CHEBI:29101") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sodium(1+)") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (potassium(1+)) + +AnnotationAssertion( "A monoatomic monocation obtained from potassium.") +AnnotationAssertion( "+1") +AnnotationAssertion( "K") +AnnotationAssertion( "InChI=1S/K/q+1") +AnnotationAssertion( "NPYPAHLBTDXSSS-UHFFFAOYSA-N") +AnnotationAssertion( "39.09830") +AnnotationAssertion( "38.96316") +AnnotationAssertion( "[K+]") +AnnotationAssertion( "CHEBI:26219") +AnnotationAssertion( "CHEBI:49685") +AnnotationAssertion( "CHEBI:8345") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:24203-36-9") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:15203") +AnnotationAssertion( "KEGG:C00238") +AnnotationAssertion( "KEGG:D08403") +AnnotationAssertion( "PDBeChem:K") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "potassium cation") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "potassium(1+)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "potassium(1+) ion") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "potassium(I) cation") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "K(+)") +AnnotationAssertion(Annotation( "UniProt") "K(+)") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "K+") +AnnotationAssertion(Annotation( "PDBeChem") "POTASSIUM ION") +AnnotationAssertion( "CHEBI:29103") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "potassium(1+)") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (sulfonic acid) + +AnnotationAssertion( "0") +AnnotationAssertion( "H2O3S") +AnnotationAssertion( "InChI=1S/H2O3S/c1-4(2)3/h4H,(H,1,2,3)") +AnnotationAssertion( "BDHFUVZGWQCTTF-UHFFFAOYSA-N") +AnnotationAssertion( "82.08008") +AnnotationAssertion( "81.97247") +AnnotationAssertion( "[H]S(O)(=O)=O") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1404640") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydridohydroxidodioxidosulfur") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "sulfonic acid") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "HSHO3") +AnnotationAssertion(Annotation( "ChEBI") "Sulfonsaeure") +AnnotationAssertion(Annotation( "IUPAC") "[SHO2(OH)]") +AnnotationAssertion(Annotation( "ChEBI") "acide sulfonique") +AnnotationAssertion(Annotation( "ChEBI") "sulphonic acid") +AnnotationAssertion( "CHEBI:29214") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sulfonic acid") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (hydrogen fluoride) + +AnnotationAssertion( "A diatomic molecule containing covalently bonded hydrogen and fluorine atoms.") +AnnotationAssertion( "0") +AnnotationAssertion( "FH") +AnnotationAssertion( "InChI=1S/FH/h1H") +AnnotationAssertion( "KRHYYFGTRYWZRS-UHFFFAOYSA-N") +AnnotationAssertion( "20.00634") +AnnotationAssertion( "20.00623") +AnnotationAssertion( "F[H]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7664-39-3") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:7664-39-3") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7664-39-3") +AnnotationAssertion(Annotation( "DrugCentral") "Drug_Central:4499") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:166") +AnnotationAssertion( "KEGG:C16487") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Hydrogen fluoride") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "fluorane") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "fluoridohydrogen") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydrogen fluoride") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Fluoride") +AnnotationAssertion(Annotation( "ChEBI") "Fluorwasserstoff") +AnnotationAssertion(Annotation( "IUPAC") "HF") +AnnotationAssertion(Annotation( "ChEBI") "Hydrogenfluorid") +AnnotationAssertion(Annotation( "IUPAC") "[HF]") +AnnotationAssertion(Annotation( "ChEBI") "fluorure d'hydrogene") +AnnotationAssertion(Annotation( "ChemIDplus") "hydrofluoric acid") +AnnotationAssertion( "CHEBI:29228") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydrogen fluoride") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (azanide) + +AnnotationAssertion( "-1") +AnnotationAssertion( "H2N") +AnnotationAssertion( "InChI=1S/H2N/h1H2/q-1") +AnnotationAssertion( "HYGWNUKOUCZBND-UHFFFAOYSA-N") +AnnotationAssertion( "16.02262") +AnnotationAssertion( "16.01927") +AnnotationAssertion( "[H][N-][H]") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "amide") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "azanide") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "dihydridonitrate(1-)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "NH2(-)") +AnnotationAssertion( "CHEBI:29337") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "azanide") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (hydridonitrate(2-)) + +AnnotationAssertion( "A divalent inorganic anion resulting from the removal of two protons from ammonia.") +AnnotationAssertion( "-2") +AnnotationAssertion( "HN") +AnnotationAssertion( "InChI=1S/HN/h1H/q-2") +AnnotationAssertion( "DZQYTNGKSBCIOE-UHFFFAOYSA-N") +AnnotationAssertion( "15.01468") +AnnotationAssertion( "15.01200") +AnnotationAssertion( "[N--][H]") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "azanediide") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydridonitrate(2-)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "NH(2-)") +AnnotationAssertion(Annotation( "IUPAC") "imide") +AnnotationAssertion( "CHEBI:29340") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydridonitrate(2-)") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (methanediide) + +AnnotationAssertion( "-2") +AnnotationAssertion( "CH2") +AnnotationAssertion( "InChI=1S/CH2/h1H2/q-2") +AnnotationAssertion( "PZPOWPOFQLSNJO-UHFFFAOYSA-N") +AnnotationAssertion( "14.02658") +AnnotationAssertion( "14.01675") +AnnotationAssertion( "[H][C--][H]") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:5915711") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:322698") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "dihydridocarbonate(2-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "methanediide") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "CH2(2-)") +AnnotationAssertion(Annotation( "ChEBI") "[CH2](2-)") +AnnotationAssertion( "CHEBI:29360") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "methanediide") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (oxonium) + +AnnotationAssertion( "+1") +AnnotationAssertion( "H3O") +AnnotationAssertion( "InChI=1S/H2O/h1H2/p+1") +AnnotationAssertion( "XLYOFNOQVPJJNP-UHFFFAOYSA-O") +AnnotationAssertion( "19.02322") +AnnotationAssertion( "19.01784") +AnnotationAssertion( "[H][O+]([H])[H]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:13968-08-6") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:13968-08-6") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:141") +AnnotationAssertion( "MolBase:1646") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "aquahydrogen(1+)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "oxidanium") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "oxonium") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "trihydridooxygen(1+)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "H3O(+)") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "Hydronium cation") +AnnotationAssertion(Annotation( "ChemIDplus") "Hydronium ion") +AnnotationAssertion(Annotation( "MolBase") "[OH3](+)") +AnnotationAssertion( "CHEBI:29412") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oxonium") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (methanide) + +AnnotationAssertion( "-1") +AnnotationAssertion( "CH3") +AnnotationAssertion( "InChI=1S/CH3/h1H3/q-1") +AnnotationAssertion( "LGRLWUINFJPLSH-UHFFFAOYSA-N") +AnnotationAssertion( "15.03452") +AnnotationAssertion( "15.02402") +AnnotationAssertion( "[H][C-]([H])[H]") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1813938") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:15194-58-8") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:259263") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "methanide") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "trihydridocarbonate(1-)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "CH3(-)") +AnnotationAssertion(Annotation( "ChEBI") "[CH3](-)") +AnnotationAssertion(Annotation( "IUPAC") "lambda(2)-methanuide") +AnnotationAssertion(Annotation( "IUPAC") "methyl anion") +AnnotationAssertion( "CHEBI:29438") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "methanide") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (nitro group) + +AnnotationAssertion( "0") +AnnotationAssertion( "NO2") +AnnotationAssertion( "46.00550") +AnnotationAssertion( "45.99290") +AnnotationAssertion( "*[N+](=O)[O-]") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "nitro") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "-NO2") +AnnotationAssertion( "CHEBI:29785") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nitro group") +SubClassOf( ) +SubClassOf( ) + +# Class: (sulfo group) + +AnnotationAssertion( "0") +AnnotationAssertion( "HO3S") +AnnotationAssertion( "81.07214") +AnnotationAssertion( "80.96464") +AnnotationAssertion( "S(=O)(O)(*)=O") +AnnotationAssertion( "PDBeChem:SFO") +AnnotationAssertion(Annotation( "PDBeChem") "SULFO GROUP") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydroxydioxo-lambda(6)-sulfanyl") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydroxysulfonyl") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "sulfo") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "-S(O)2(OH)") +AnnotationAssertion( "CHEBI:29922") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sulfo group") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (acetate) + +AnnotationAssertion( "A monocarboxylic acid anion resulting from the removal of a proton from the carboxy group of acetic acid.") +AnnotationAssertion( "-1") +AnnotationAssertion( "C2H3O2") +AnnotationAssertion( "InChI=1S/C2H4O2/c1-2(3)4/h1H3,(H,3,4)/p-1") +AnnotationAssertion( "QTBSBXVTEAMEQO-UHFFFAOYSA-M") +AnnotationAssertion( "59.04402") +AnnotationAssertion( "59.01385") +AnnotationAssertion( "CC([O-])=O") +AnnotationAssertion( "CHEBI:13704") +AnnotationAssertion( "CHEBI:22165") +AnnotationAssertion( "CHEBI:40480") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1901470") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:71-50-1") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:71-50-1") +AnnotationAssertion( "DrugBank:DB03166") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1379") +AnnotationAssertion( "KEGG:C00033") +AnnotationAssertion( "MetaCyc:ACET") +AnnotationAssertion( "PDBeChem:ACT") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17190852") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22211106") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22371380") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1901470") +AnnotationAssertion(Annotation( "UM-BBD") "UM-BBD_compID:c0050") +AnnotationAssertion( "Wikipedia:Acetate") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "acetate") +AnnotationAssertion(Annotation( "UniProt") "acetate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "PDBeChem") "ACETATE ION") +AnnotationAssertion(Annotation( "ChEBI") "Azetat") +AnnotationAssertion(Annotation( "IUPAC") "CH3-COO(-)") +AnnotationAssertion(Annotation( "ChEBI") "Ethanoat") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "MeCO2 anion") +AnnotationAssertion(Annotation( "ChemIDplus") "acetic acid, ion(1-)") +AnnotationAssertion(Annotation( "ChEBI") "ethanoate") +AnnotationAssertion( "CHEBI:30089") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "acetate") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (hexachloroplatinate(2-)) + +AnnotationAssertion( "-2") +AnnotationAssertion( "Cl6Pt") +AnnotationAssertion( "InChI=1S/6ClH.Pt/h6*1H;/q;;;;;;+4/p-6") +AnnotationAssertion( "GBFHNZZOZWQQPA-UHFFFAOYSA-H") +AnnotationAssertion( "407.79420") +AnnotationAssertion( "404.77900") +AnnotationAssertion( "Cl[Pt--](Cl)(Cl)(Cl)(Cl)Cl") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:26710") +AnnotationAssertion( "MolBase:785") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hexachloridoplatinate(2-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hexachloridoplatinate(IV)") +AnnotationAssertion(Annotation( "IUPAC") "hexachloroplatinate(2-)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "[PtCl6](2-)") +AnnotationAssertion( "CHEBI:30119") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hexachloroplatinate(2-)") +SubClassOf( ) +SubClassOf( ) + +# Class: (tetramethyllead) + +AnnotationAssertion( "0") +AnnotationAssertion( "C4H12Pb") +AnnotationAssertion( "InChI=1S/4CH3.Pb/h4*1H3;") +AnnotationAssertion( "XOOGZRUBTYCLHG-UHFFFAOYSA-N") +AnnotationAssertion( "267.33808") +AnnotationAssertion( "268.07055") +AnnotationAssertion( "C[Pb](C)(C)C") +AnnotationAssertion(Annotation( "ChemIDplus") "Beilstein:3902986") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:75-74-1") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:75-74-1") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:2491") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "tetramethyllead") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "tetramethylplumbane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Bleitetramethyl") +AnnotationAssertion(Annotation( "IUPAC") "PbMe4") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "TML") +AnnotationAssertion(Annotation( "ChemIDplus") "lead tetramethyl") +AnnotationAssertion(Annotation( "ChemIDplus") "tetramethyl lead") +AnnotationAssertion( "CHEBI:30183") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tetramethyllead") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (helium atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "He") +AnnotationAssertion( "InChI=1S/He") +AnnotationAssertion( "SWQJXJOGLNCZEY-UHFFFAOYSA-N") +AnnotationAssertion( "4.00260") +AnnotationAssertion( "4.00260") +AnnotationAssertion( "[He]") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7440-59-7") +AnnotationAssertion(Annotation( "DrugCentral") "Drug_Central:4262") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:16294") +AnnotationAssertion( "WebElements:He") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "helium") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "2He") +AnnotationAssertion(Annotation( "IUPAC") "He") +AnnotationAssertion(Annotation( "ChEBI") "Helium") +AnnotationAssertion(Annotation( "ChEBI") "helio") +AnnotationAssertion(Annotation( "ChEBI") "helium") +AnnotationAssertion( "CHEBI:30217") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "helium atom") +SubClassOf( ) +SubClassOf( ) + +# Class: (difluorine) + +AnnotationAssertion( "0") +AnnotationAssertion( "F2") +AnnotationAssertion( "InChI=1S/F2/c1-2") +AnnotationAssertion( "PXGOKWXKJXAPGV-UHFFFAOYSA-N") +AnnotationAssertion( "37.99681") +AnnotationAssertion( "37.99681") +AnnotationAssertion( "FF") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7782-41-4") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7782-41-4") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:544") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "difluorine") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "F2") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "bifluoriden") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "fluorine") +AnnotationAssertion( "CHEBI:30236") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "difluorine") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (pentacarbonyliron) + +AnnotationAssertion( "0") +AnnotationAssertion( "C5FeO5") +AnnotationAssertion( "InChI=1S/5CO.Fe/c5*1-2;") +AnnotationAssertion( "FYOFOKCECDGJBF-UHFFFAOYSA-N") +AnnotationAssertion( "195.89550") +AnnotationAssertion( "195.90951") +AnnotationAssertion( "[O]#C[Fe](C#[O])(C#[O])(C#[O])C#[O]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:13463-40-6") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:13463-40-6") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:3567") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:3568") +AnnotationAssertion( "MolBase:49") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "pentacarbonyliron") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "pentacarbonyliron(0)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "[Fe(CO)5]") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "iron pentacarbonyl") +AnnotationAssertion( "CHEBI:30251") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "pentacarbonyliron") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (tetramethyltin) + +AnnotationAssertion( "An organotin compound carrying four methyl groups.") +AnnotationAssertion( "0") +AnnotationAssertion( "C4H12Sn") +AnnotationAssertion( "InChI=1S/4CH3.Sn/h4*1H3;") +AnnotationAssertion( "VXKWYPOMXBVZSJ-UHFFFAOYSA-N") +AnnotationAssertion( "178.84808") +AnnotationAssertion( "179.99610") +AnnotationAssertion( "C[Sn](C)(C)C") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3647887") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:594-27-4") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:594-27-4") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1938") +AnnotationAssertion( "MolBase:817") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22007212") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:23320683") +AnnotationAssertion( "Patent:US4216066") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:3647887") +AnnotationAssertion( "Wikipedia:Tetramethyltin") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "tetramethylstannane") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "tetramethyltin") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "(CH3)4Sn") +AnnotationAssertion(Annotation( "IUPAC") "SnMe4") +AnnotationAssertion(Annotation( "MolBase") "[SnMe4]") +AnnotationAssertion( "CHEBI:30420") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tetramethyltin") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (tellurium atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "Te") +AnnotationAssertion( "InChI=1S/Te") +AnnotationAssertion( "PORWMNRCUJJQNO-UHFFFAOYSA-N") +AnnotationAssertion( "127.60000") +AnnotationAssertion( "129.90622") +AnnotationAssertion( "[Te]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:13494-80-9") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:13494-80-9") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:16309") +AnnotationAssertion( "WebElements:Te") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "tellurium") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "52Te") +AnnotationAssertion(Annotation( "IUPAC") "Te") +AnnotationAssertion(Annotation( "ChEBI") "Tellur") +AnnotationAssertion(Annotation( "ChEBI") "tellure") +AnnotationAssertion(Annotation( "ChEBI") "tellurium") +AnnotationAssertion(Annotation( "ChEBI") "teluro") +AnnotationAssertion( "CHEBI:30452") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tellurium atom") +SubClassOf( ) +SubClassOf( ) + +# Class: (sulfur hexafluoride) + +AnnotationAssertion( "A sulfur coordination entity consisting of six fluorine atoms attached to a central sulfur atom. It is the most potent greenhouse gas currently known, with a global warming potential of 23,900 times that of CO2 over a 100 year period (SF6 has an estimated lifetime in the atmosphere of between 800 and 3,000 years).") +AnnotationAssertion( "0") +AnnotationAssertion( "F6S") +AnnotationAssertion( "InChI=1S/F6S/c1-7(2,3,4,5)6") +AnnotationAssertion( "SFZCNBIFKDRMGX-UHFFFAOYSA-N") +AnnotationAssertion( "146.050") +AnnotationAssertion( "145.96249") +AnnotationAssertion( "FS(F)(F)(F)(F)F") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:2551-62-4") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:2551-62-4") +AnnotationAssertion(Annotation( "DrugCentral") "Drug_Central:4039") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:2752") +AnnotationAssertion( "KEGG:D05962") +AnnotationAssertion( "MolBase:971") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:25459612") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:25559529") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:25607376") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:25647411") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:25660738") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:7247840") +AnnotationAssertion( "Wikipedia:Sulfur_hexafluoride") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hexafluoridosulfur") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "sulfur hexafluoride") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "sulfur(6+) fluoride") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "sulfur(VI) fluoride") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "SF6") +AnnotationAssertion(Annotation( "KEGG_DRUG") Annotation( ) "Sonovue") +AnnotationAssertion(Annotation( "MolBase") "[SF6]") +AnnotationAssertion( "CHEBI:30496") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sulfur hexafluoride") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (silver atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "Ag") +AnnotationAssertion( "InChI=1S/Ag") +AnnotationAssertion( "BQCADISMDOOEFD-UHFFFAOYSA-N") +AnnotationAssertion( "107.86820") +AnnotationAssertion( "106.90509") +AnnotationAssertion( "[Ag]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7440-22-4") +AnnotationAssertion( "WebElements:Ag") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "silver") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "47Ag") +AnnotationAssertion(Annotation( "IUPAC") "Ag") +AnnotationAssertion(Annotation( "ChemIDplus") "Silber") +AnnotationAssertion(Annotation( "ChEBI") "argent") +AnnotationAssertion(Annotation( "IUPAC") "argentum") +AnnotationAssertion(Annotation( "ChEBI") "plata") +AnnotationAssertion(Annotation( "ChEBI") "silver") +AnnotationAssertion( "CHEBI:30512") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "silver atom") +SubClassOf( ) + +# Class: (antimony atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "Sb") +AnnotationAssertion( "InChI=1S/Sb") +AnnotationAssertion( "WATWJIUSRGPENY-UHFFFAOYSA-N") +AnnotationAssertion( "121.76000") +AnnotationAssertion( "120.90381") +AnnotationAssertion( "[Sb]") +AnnotationAssertion( "WebElements:Sb") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "antimony") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "51Sb") +AnnotationAssertion(Annotation( "ChEBI") "Antimon") +AnnotationAssertion(Annotation( "IUPAC") "Sb") +AnnotationAssertion(Annotation( "ChEBI") "antimoine") +AnnotationAssertion(Annotation( "ChEBI") "antimonio") +AnnotationAssertion(Annotation( "ChEBI") "antimony") +AnnotationAssertion(Annotation( "IUPAC") "stibium") +AnnotationAssertion( "CHEBI:30513") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "antimony atom") +SubClassOf( ) +SubClassOf( ) + +# Class: (osmium atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "Os") +AnnotationAssertion( "InChI=1S/Os") +AnnotationAssertion( "SYQBFIAQOQZEGI-UHFFFAOYSA-N") +AnnotationAssertion( "190.23000") +AnnotationAssertion( "191.96148") +AnnotationAssertion( "[Os]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7440-04-2") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7440-04-2") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:16234") +AnnotationAssertion( "WebElements:Os") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "osmium") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "76Os") +AnnotationAssertion(Annotation( "IUPAC") "Os") +AnnotationAssertion(Annotation( "ChEBI") "osmio") +AnnotationAssertion(Annotation( "ChEBI") "osmium") +AnnotationAssertion( "CHEBI:30687") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "osmium atom") +SubClassOf( ) +SubClassOf( ) + +# Class: (propionic acid) + +AnnotationAssertion( "A short-chain saturated fatty acid comprising ethane attached to the carbon of a carboxy group.") +AnnotationAssertion( "0") +AnnotationAssertion( "C3H6O2") +AnnotationAssertion( "InChI=1S/C3H6O2/c1-2-3(4)5/h2H2,1H3,(H,4,5)") +AnnotationAssertion( "XBDQKXXYIPTUBI-UHFFFAOYSA-N") +AnnotationAssertion( "74.07850") +AnnotationAssertion( "74.03678") +AnnotationAssertion( "CCC(O)=O") +AnnotationAssertion( "CHEBI:26304") +AnnotationAssertion( "CHEBI:45227") +AnnotationAssertion( "CHEBI:8476") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:506071") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:79-09-4") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:79-09-4") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:79-09-4") +AnnotationAssertion( "DrugBank:DB03766") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1821") +AnnotationAssertion( "KEGG:C00163") +AnnotationAssertion( "KEGG:D02310") +AnnotationAssertion(Annotation( "LIPID MAPS") "LIPID_MAPS_instance:LMFA01010003") +AnnotationAssertion( "PDBeChem:PPI") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:15868474") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:1628870") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16763906") +AnnotationAssertion( "PPDB:1341") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Propionic acid") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "propanoic acid") +AnnotationAssertion(Annotation( "IUPAC") "propionic acid") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "CH3-CH2-COOH") +AnnotationAssertion(Annotation( "ChEBI") "PA") +AnnotationAssertion(Annotation( "PDBeChem") "PROPANOIC ACID") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Propanoic acid") +AnnotationAssertion(Annotation( "ChEBI") "Propionsaeure") +AnnotationAssertion(Annotation( "ChEBI") "acide propanoique") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "acide propionique") +AnnotationAssertion(Annotation( "ChemIDplus") "carboxyethane") +AnnotationAssertion(Annotation( "ChemIDplus") "ethanecarboxylic acid") +AnnotationAssertion(Annotation( "ChemIDplus") "ethylformic acid") +AnnotationAssertion(Annotation( "ChemIDplus") "metacetonic acid") +AnnotationAssertion(Annotation( "ChemIDplus") "methylacetic acid") +AnnotationAssertion(Annotation( "LIPID_MAPS") "propioic acid") +AnnotationAssertion(Annotation( "ChEBI") "propoic acid") +AnnotationAssertion(Annotation( "ChemIDplus") "pseudoacetic acid") +AnnotationAssertion( "CHEBI:30768") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "propionic acid") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (dimethylmercury) + +AnnotationAssertion( "0") +AnnotationAssertion( "C2H6Hg") +AnnotationAssertion( "InChI=1S/2CH3.Hg/h2*1H3;") +AnnotationAssertion( "ATZBPOVXVPIOMR-UHFFFAOYSA-N") +AnnotationAssertion( "230.65904") +AnnotationAssertion( "232.01759") +AnnotationAssertion( "C[Hg]C") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3600205") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:593-74-8") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:593-74-8") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:25889") +AnnotationAssertion( "MolBase:298") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "dimethylmercury") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChemIDplus") "Dimethyl mercury") +AnnotationAssertion(Annotation( "MolBase") "[HgMe2]") +AnnotationAssertion( "CHEBI:30786") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "dimethylmercury") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (alcohol) + +AnnotationAssertion( "A compound in which a hydroxy group, -OH, is attached to a saturated carbon atom.") +AnnotationAssertion( "0") +AnnotationAssertion( "HOR") +AnnotationAssertion( "17.007") +AnnotationAssertion( "17.00274") +AnnotationAssertion( "O[*]") +AnnotationAssertion( "CHEBI:13804") +AnnotationAssertion( "CHEBI:22288") +AnnotationAssertion( "CHEBI:2553") +AnnotationAssertion( "KEGG:C00069") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Alcohol") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "alcohols") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "UniProt") "an alcohol") +AnnotationAssertion( "CHEBI:30879") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "alcohol") +SubClassOf( ) + +# Class: (silver(1+) nitrate) + +AnnotationAssertion( "0") +AnnotationAssertion( "AgNO3") +AnnotationAssertion( "InChI=1S/Ag.NO3/c;2-1(3)4/q+1;-1") +AnnotationAssertion( "SQGYOTSLMSWVJD-UHFFFAOYSA-N") +AnnotationAssertion( "169.87314") +AnnotationAssertion( "168.89291") +AnnotationAssertion( "[Ag+].[O-]N(=O)=O") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7761-88-8") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:23909") +AnnotationAssertion( "KEGG:D01730") +AnnotationAssertion( "Wikipedia:Silver_nitrate") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "silver mononitrate") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "silver(1+) nitrate") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "silver(I) nitrate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "AgNO3") +AnnotationAssertion(Annotation( "ChemIDplus") "nitric acid silver(I) salt") +AnnotationAssertion(Annotation( "ChemIDplus") "silver nitrate") +AnnotationAssertion( "CHEBI:32130") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "silver(1+) nitrate") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (secondary amine) + +AnnotationAssertion( "A compound formally derived from ammonia by replacing two hydrogen atoms by hydrocarbyl groups.") +AnnotationAssertion( "0") +AnnotationAssertion( "HNR2") +AnnotationAssertion( "15.01460") +AnnotationAssertion( "15.01090") +AnnotationAssertion( "[H]N([*])[*]") +AnnotationAssertion( "CHEBI:26618") +AnnotationAssertion( "CHEBI:9078") +AnnotationAssertion( "KEGG:C02324") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Secondary amine") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "secondary amines") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "R2NH") +AnnotationAssertion(Annotation( "ChEBI") "sekundaeres Amin") +AnnotationAssertion( "CHEBI:32863") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "secondary amine") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (amine) + +AnnotationAssertion( "A compound formally derived from ammonia by replacing one, two or three hydrogen atoms by hydrocarbyl groups.") +AnnotationAssertion( "CHEBI:13814") +AnnotationAssertion( "CHEBI:22474") +AnnotationAssertion( "CHEBI:2641") +AnnotationAssertion( "KEGG:C00706") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Amine") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "amines") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Amin") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Substituted amine") +AnnotationAssertion( "CHEBI:32952") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "amine") +SubClassOf( ) + +# Class: (sodium acetate) + +AnnotationAssertion( "0") +AnnotationAssertion( "C2H3NaO2") +AnnotationAssertion( "InChI=1S/C2H4O2.Na/c1-2(3)4;/h1H3,(H,3,4);/q;+1/p-1") +AnnotationAssertion( "VMHLLURERBWHNL-UHFFFAOYSA-M") +AnnotationAssertion( "82.03379") +AnnotationAssertion( "82.00307") +AnnotationAssertion( "[Na+].CC([O-])=O") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3595639") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:127-09-3") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:20502") +AnnotationAssertion( "Wikipedia:Sodium_Acetate") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "sodium acetate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Natriumazetat") +AnnotationAssertion(Annotation( "ChemIDplus") "acetic acid, sodium salt") +AnnotationAssertion(Annotation( "ChemIDplus") "anhydrous sodium acetate") +AnnotationAssertion(Annotation( "ChemIDplus") "sodium acetate anhydrous") +AnnotationAssertion( "CHEBI:32954") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sodium acetate") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (amide) + +AnnotationAssertion( "An amide is a derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group.") +AnnotationAssertion( "CHEBI:22473") +AnnotationAssertion( "CHEBI:2633") +AnnotationAssertion( "KEGG:C00241") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Amide") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "amides") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:32988") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "amide") +SubClassOf( ) + +# Class: (boron trifluoride) + +AnnotationAssertion( "0") +AnnotationAssertion( "BF3") +AnnotationAssertion( "InChI=1S/BF3/c2-1(3)4") +AnnotationAssertion( "WTEOIRVLGSZEPR-UHFFFAOYSA-N") +AnnotationAssertion( "67.80621") +AnnotationAssertion( "68.00451") +AnnotationAssertion( "FB(F)F") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7637-07-2") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7637-07-2") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1519") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "boron trifluoride") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "trifluoridoboron") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "trifluoroborane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "BF3") +AnnotationAssertion(Annotation( "ChEBI") "Bortrifluorid") +AnnotationAssertion(Annotation( "IUPAC") "[BF3]") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "boron fluoride") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "trifluoroboron") +AnnotationAssertion( "CHEBI:33093") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "boron trifluoride") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (application) + +AnnotationAssertion( "Intended use of the molecular entity or part thereof by humans.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:33232") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "application") +SubClassOf( ) + +# Class: (fundamental particle) + +AnnotationAssertion( "A particle not known to have substructure.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "elementary particle") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "elementary particles") +AnnotationAssertion( "CHEBI:33233") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fundamental particle") +SubClassOf( ) + +# Class: (monoatomic entity) + +AnnotationAssertion( "A monoatomic entity is a molecular entity consisting of a single atom.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "atomic entity") +AnnotationAssertion(Annotation( "ChEBI") "monoatomic entities") +AnnotationAssertion( "CHEBI:33238") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monoatomic entity") +SubClassOf( ) + +# Class: (coordination entity) + +AnnotationAssertion( "An assembly consisting of a central atom (usually metallic) to which is attached a surrounding array of other groups of atoms (ligands).") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "coordination entities") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "coordination entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "coordination compounds") +AnnotationAssertion( "CHEBI:33240") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "coordination entity") +SubClassOf( ) + +# Class: (oxoacid derivative) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "oxoacid derivatives") +AnnotationAssertion( "CHEBI:33241") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oxoacid derivative") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (inorganic hydride) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "inorganic hydrides") +AnnotationAssertion( "CHEBI:33242") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "inorganic hydride") +SubClassOf( ) +SubClassOf( ) + +# Class: (organic fundamental parent) + +AnnotationAssertion( "An organic fundamental parent is a structure used as a basis for substitutive names in organic nomenclature, containing, in addition to one or more hydrogen atoms, a single atom of an element, a number of atoms (alike or different) linked together to form an unbranched chain, a monocyclic or polycyclic ring system, or a ring assembly or ring/chain system.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic fundamental parents") +AnnotationAssertion(Annotation( "ChEBI") "organic parent hydrides") +AnnotationAssertion( "CHEBI:33245") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic fundamental parent") +SubClassOf( ) +SubClassOf( ) + +# Class: (inorganic group) + +AnnotationAssertion( "Any substituent group which does not contain carbon.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "inorganic groups") +AnnotationAssertion( "CHEBI:33246") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "inorganic group") +SubClassOf( ) + +# Class: (organic group) + +AnnotationAssertion( "Any substituent group or skeleton containing carbon.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic groups") +AnnotationAssertion( "CHEBI:33247") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic group") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (hydrocarbyl group) + +AnnotationAssertion( "A univalent group formed by removing a hydrogen atom from a hydrocarbon.") +AnnotationAssertion(Annotation( "IUPAC") "hydrocarbyl group") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydrocarbyl groups") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "groupe hydrocarbyle") +AnnotationAssertion(Annotation( "IUPAC") "grupo hidrocarbilo") +AnnotationAssertion(Annotation( "IUPAC") "grupos hidrocarbilo") +AnnotationAssertion( "CHEBI:33248") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydrocarbyl group") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (organyl group) + +AnnotationAssertion( "Any organic substituent group, regardless of functional type, having one free valence at a carbon atom.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "organyl group") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "organyl groups") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "groupe organyle") +AnnotationAssertion(Annotation( "IUPAC") "grupo organilo") +AnnotationAssertion(Annotation( "IUPAC") "grupos organilo") +AnnotationAssertion( "CHEBI:33249") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organyl group") +SubClassOf( ) + +# Class: (atom) + +AnnotationAssertion( "A chemical entity constituting the smallest component of an element having the chemical properties of the element.") +AnnotationAssertion( "CHEBI:22671") +AnnotationAssertion( "CHEBI:23907") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "atom") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "atome") +AnnotationAssertion(Annotation( "IUPAC") "atomo") +AnnotationAssertion(Annotation( "ChEBI") "atoms") +AnnotationAssertion(Annotation( "ChEBI") "atomus") +AnnotationAssertion(Annotation( "ChEBI") "element") +AnnotationAssertion(Annotation( "ChEBI") "elements") +AnnotationAssertion( "CHEBI:33250") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "atom") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (atomic nucleus) + +AnnotationAssertion( "A nucleus is the positively charged central portion of an atom, excluding the orbital electrons.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "nucleus") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Atomkern") +AnnotationAssertion(Annotation( "ChEBI") "Kern") +AnnotationAssertion(Annotation( "IUPAC") "noyau") +AnnotationAssertion(Annotation( "ChEBI") "noyau atomique") +AnnotationAssertion(Annotation( "ChEBI") "nuclei") +AnnotationAssertion(Annotation( "IUPAC") "nucleo") +AnnotationAssertion(Annotation( "ChEBI") "nucleo atomico") +AnnotationAssertion(Annotation( "ChEBI") "nucleus atomi") +AnnotationAssertion( "CHEBI:33252") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "atomic nucleus") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (nucleon) + +AnnotationAssertion( "Heavy nuclear particle: proton or neutron.") +AnnotationAssertion(Annotation( "IUPAC") "nucleon") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "nucleon") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Nukleon") +AnnotationAssertion(Annotation( "ChEBI") "Nukleonen") +AnnotationAssertion(Annotation( "ChEBI") "nucleons") +AnnotationAssertion( "CHEBI:33253") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nucleon") +SubClassOf( ) +SubClassOf( ) + +# Class: (alkylmercury compound) + +AnnotationAssertion( "0") +AnnotationAssertion( "HgR") +AnnotationAssertion( "200.599") +AnnotationAssertion( "201.97064") +AnnotationAssertion( "CHEBI:22336") +AnnotationAssertion( "CHEBI:2589") +AnnotationAssertion( "KEGG:C01343") +AnnotationAssertion( "KEGG:C01886") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Alkylmercury") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Alkylmercury ion") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "RHg+") +AnnotationAssertion(Annotation( "ChEBI") "alkylmercury compounds") +AnnotationAssertion( "CHEBI:33255") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "alkylmercury compound") +SubClassOf( ) + +# Class: (primary amide) + +AnnotationAssertion( "A derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group.") +AnnotationAssertion(Annotation( "IUPAC") "primary amide") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "primary amides") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:33256") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "primary amide") +SubClassOf( ) + +# Class: (elemental molecular entity) + +AnnotationAssertion( "A molecular entity all atoms of which have the same atomic number.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "homoatomic entity") +AnnotationAssertion(Annotation( "ChEBI") "homoatomic molecular entities") +AnnotationAssertion(Annotation( "ChEBI") "homoatomic molecular entity") +AnnotationAssertion( "CHEBI:33259") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "elemental molecular entity") +SubClassOf( ) + +# Class: (organosulfur compound) + +AnnotationAssertion( "An organosulfur compound is a compound containing at least one carbon-sulfur bond.") +AnnotationAssertion( "CHEBI:23010") +AnnotationAssertion( "CHEBI:25714") +AnnotationAssertion( "Wikipedia:Organosulfur_compounds") +AnnotationAssertion(Annotation( "ChEBI") "organosulfur compound") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organosulfur compounds") +AnnotationAssertion( "CHEBI:33261") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organosulfur compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (polyatomic anion) + +AnnotationAssertion( "An anion consisting of more than one atom.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "polyatomic anions") +AnnotationAssertion( "CHEBI:33273") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "polyatomic anion") +SubClassOf( ) +SubClassOf( ) + +# Class: (antimicrobial agent) + +AnnotationAssertion( "A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans.") +AnnotationAssertion( "CHEBI:22582") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:12964249") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22117953") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22439833") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22849268") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22849276") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22958833") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Antibiotika") +AnnotationAssertion(Annotation( "ChEBI") "Antibiotikum") +AnnotationAssertion(Annotation( "ChEBI") "antibiotic") +AnnotationAssertion(Annotation( "ChEBI") "antibiotics") +AnnotationAssertion(Annotation( "IUPAC") "antibiotique") +AnnotationAssertion(Annotation( "ChEBI") "antimicrobial") +AnnotationAssertion(Annotation( "ChEBI") "antimicrobial agents") +AnnotationAssertion(Annotation( "ChEBI") "antimicrobials") +AnnotationAssertion(Annotation( "ChEBI") "microbicide") +AnnotationAssertion(Annotation( "ChEBI") "microbicides") +AnnotationAssertion( "CHEBI:33281") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "antimicrobial agent") +SubClassOf( ) + +# Class: (nutrient) + +AnnotationAssertion( "A nutrient is a food component that an organism uses to survive and grow.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "nutrients") +AnnotationAssertion( "CHEBI:33284") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nutrient") +SubClassOf( ) + +# Class: (heteroorganic entity) + +AnnotationAssertion( "A heteroorganic entity is an organic molecular entity in which carbon atoms or organic groups are bonded directly to one or more heteroatoms.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "heteroorganic entities") +AnnotationAssertion(Annotation( "ChEBI") "organoelement compounds") +AnnotationAssertion( "CHEBI:33285") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "heteroorganic entity") +SubClassOf( ) + +# Class: (agrochemical) + +AnnotationAssertion( "An agrochemical is a substance that is used in agriculture or horticulture.") +AnnotationAssertion( "Wikipedia:Agrochemical") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "agrichemical") +AnnotationAssertion(Annotation( "ChEBI") "agrichemicals") +AnnotationAssertion(Annotation( "ChEBI") "agricultural chemicals") +AnnotationAssertion(Annotation( "ChEBI") "agrochemicals") +AnnotationAssertion( "CHEBI:33286") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "agrochemical") +SubClassOf( ) + +# Class: (fertilizer) + +AnnotationAssertion( "A fertilizer is any substance that is added to soil or water to assist the growth of plants.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "fertiliser") +AnnotationAssertion(Annotation( "ChEBI") "fertilizers") +AnnotationAssertion( "CHEBI:33287") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fertilizer") +SubClassOf( ) + +# Class: (fuel) + +AnnotationAssertion( "An energy-rich substance that can be transformed with release of usable energy.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:33292") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fuel") +SubClassOf( ) + +# Class: (diagnostic agent) + +AnnotationAssertion( "A substance administered to aid diagnosis of a disease.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "diagnostic aid") +AnnotationAssertion( "CHEBI:33295") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "diagnostic agent") +SubClassOf( ) + +# Class: (alkali metal molecular entity) + +AnnotationAssertion( "A molecular entity containing one or more atoms of an alkali metal.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "alkali metal molecular entities") +AnnotationAssertion( "CHEBI:33296") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "alkali metal molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (pnictogen) + +AnnotationAssertion( "Any p-block element atom that is in group 15 of the periodic table: nitrogen, phosphorus, arsenic, antimony and bismuth.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "pnictogens") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "group 15 elements") +AnnotationAssertion(Annotation( "ChEBI") "group V elements") +AnnotationAssertion(Annotation( "ChEBI") "nitrogenoideos") +AnnotationAssertion(Annotation( "ChEBI") "nitrogenoides") +AnnotationAssertion(Annotation( "ChEBI") "pnictogene") +AnnotationAssertion(Annotation( "ChEBI") "pnictogenes") +AnnotationAssertion( "CHEBI:33300") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "pnictogen") +SubClassOf( ) + +# Class: (pnictogen molecular entity) + +AnnotationAssertion( "A p-block molecular entity containing any pnictogen.") +AnnotationAssertion(Annotation( "ChEBI") "pnictogen molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "pnictogen molecular entities") +AnnotationAssertion( "CHEBI:33302") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "pnictogen molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (chalcogen) + +AnnotationAssertion( "Any p-block element belonging to the group 16 family of the periodic table.") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17084588") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "chalcogen") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "chalcogens") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Chalkogen") +AnnotationAssertion(Annotation( "ChEBI") "Chalkogene") +AnnotationAssertion(Annotation( "ChEBI") "anfigeno") +AnnotationAssertion(Annotation( "ChEBI") "anfigenos") +AnnotationAssertion(Annotation( "ChEBI") "calcogeno") +AnnotationAssertion(Annotation( "ChEBI") "calcogenos") +AnnotationAssertion(Annotation( "ChEBI") "chalcogene") +AnnotationAssertion(Annotation( "ChEBI") "chalcogenes") +AnnotationAssertion(Annotation( "ChEBI") "group 16 elements") +AnnotationAssertion(Annotation( "ChEBI") "group VI elements") +AnnotationAssertion( "CHEBI:33303") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chalcogen") +SubClassOf( ) + +# Class: (chalcogen molecular entity) + +AnnotationAssertion( "Any p-block molecular entity containing a chalcogen.") +AnnotationAssertion(Annotation( "ChEBI") "chalcogen molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "chalcogen compounds") +AnnotationAssertion(Annotation( "ChEBI") "chalcogen molecular entities") +AnnotationAssertion( "CHEBI:33304") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chalcogen molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (tellurium molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "tellurium molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "tellurium compounds") +AnnotationAssertion(Annotation( "ChEBI") "tellurium molecular entities") +AnnotationAssertion( "CHEBI:33305") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tellurium molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (carbon group element atom) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "group 14 elements") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "carbon group element") +AnnotationAssertion(Annotation( "ChEBI") "carbon group elements") +AnnotationAssertion(Annotation( "ChEBI") "carbonoides") +AnnotationAssertion(Annotation( "ChEBI") "cristallogene") +AnnotationAssertion(Annotation( "ChEBI") "cristallogenes") +AnnotationAssertion(Annotation( "ChEBI") "group IV elements") +AnnotationAssertion( "CHEBI:33306") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "carbon group element atom") +SubClassOf( ) + +# Class: (noble gas atom) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "noble gas") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "noble gases") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Edelgas") +AnnotationAssertion(Annotation( "ChEBI") "Edelgase") +AnnotationAssertion(Annotation( "ChEBI") "gas noble") +AnnotationAssertion(Annotation( "ChEBI") "gases nobles") +AnnotationAssertion(Annotation( "ChEBI") "gaz noble") +AnnotationAssertion(Annotation( "ChEBI") "gaz nobles") +AnnotationAssertion(Annotation( "IUPAC") "group 18 elements") +AnnotationAssertion(Annotation( "ChEBI") "group VIII elements") +AnnotationAssertion(Annotation( "ChEBI") "inert gases") +AnnotationAssertion(Annotation( "ChEBI") "noble gas") +AnnotationAssertion(Annotation( "ChEBI") "rare gases") +AnnotationAssertion( "CHEBI:33309") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "noble gas atom") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + +# Class: (monoatomic helium) + +AnnotationAssertion( "0") +AnnotationAssertion( "He") +AnnotationAssertion( "4.003") +AnnotationAssertion( "4.00260") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "elemental helium") +AnnotationAssertion( "CHEBI:33315") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monoatomic helium") +SubClassOf( ) +SubClassOf( ) + +# Class: (boron group element atom) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "group 13 elements") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Element der Borgruppe") +AnnotationAssertion(Annotation( "ChEBI") "boron group element") +AnnotationAssertion(Annotation( "ChEBI") "boron group elements") +AnnotationAssertion(Annotation( "ChEBI") "group III elements") +AnnotationAssertion( "CHEBI:33317") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "boron group element atom") +SubClassOf( ) + +# Class: (main group element atom) + +AnnotationAssertion( "An atom belonging to one of the main groups (found in the s- and p- blocks) of the periodic table.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "main group elements") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Hauptgruppenelement") +AnnotationAssertion(Annotation( "ChEBI") "Hauptgruppenelemente") +AnnotationAssertion(Annotation( "ChEBI") "main group element") +AnnotationAssertion( "CHEBI:33318") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "main group element atom") +SubClassOf( ) + +# Class: (rare earth metal atom) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "rare earth metals") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "rare earth metal") +AnnotationAssertion( "CHEBI:33321") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "rare earth metal atom") +SubClassOf( ) + +# Class: (yttrium atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "Y") +AnnotationAssertion( "InChI=1S/Y") +AnnotationAssertion( "VWQVUPCCIRVNHF-UHFFFAOYSA-N") +AnnotationAssertion( "88.90585") +AnnotationAssertion( "88.90584") +AnnotationAssertion( "[Y]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7440-65-5") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7440-65-5") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:16319") +AnnotationAssertion( "WebElements:Y") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "yttrium") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "39Y") +AnnotationAssertion(Annotation( "ChEBI") "Y") +AnnotationAssertion(Annotation( "ChEBI") "ytrio") +AnnotationAssertion(Annotation( "ChEBI") "yttrium") +AnnotationAssertion( "CHEBI:33331") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "yttrium atom") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + +# Class: (scandium group element atom) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "group 3 elements") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "scandium group element") +AnnotationAssertion(Annotation( "ChEBI") "scandium group elements") +AnnotationAssertion( "CHEBI:33335") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "scandium group element atom") +SubClassOf( ) + +# Class: (zinc group element atom) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "group 12 elements") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "zinc group element") +AnnotationAssertion(Annotation( "ChEBI") "zinc group elements") +AnnotationAssertion( "CHEBI:33340") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "zinc group element atom") +SubClassOf( ) + +# Class: (titanium atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "Ti") +AnnotationAssertion( "InChI=1S/Ti") +AnnotationAssertion( "RTAQQCXQSZGOHL-UHFFFAOYSA-N") +AnnotationAssertion( "47.86700") +AnnotationAssertion( "47.94794") +AnnotationAssertion( "[Ti]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7440-32-6") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7440-32-6") +AnnotationAssertion( "WebElements:Ti") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "titanium") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "22Ti") +AnnotationAssertion(Annotation( "IUPAC") "Ti") +AnnotationAssertion(Annotation( "ChEBI") "Titan") +AnnotationAssertion(Annotation( "ChEBI") "titane") +AnnotationAssertion(Annotation( "ChEBI") "titanio") +AnnotationAssertion(Annotation( "ChEBI") "titanium") +AnnotationAssertion( "CHEBI:33341") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "titanium atom") +SubClassOf( ) + +# Class: (titanium group element atom) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "group 4 elements") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "titanium group element") +AnnotationAssertion(Annotation( "ChEBI") "titanium group elements") +AnnotationAssertion( "CHEBI:33345") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "titanium group element atom") +SubClassOf( ) +SubClassOf( ) + +# Class: (chromium group element atom) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "group 6 elements") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "chromium group element") +AnnotationAssertion(Annotation( "ChEBI") "chromium group elements") +AnnotationAssertion( "CHEBI:33350") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chromium group element atom") +SubClassOf( ) +SubClassOf( ) + +# Class: (iron group element atom) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "group 8 elements") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "iron group element") +AnnotationAssertion(Annotation( "ChEBI") "iron group elements") +AnnotationAssertion( "CHEBI:33356") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "iron group element atom") +SubClassOf( ) +SubClassOf( ) + +# Class: (cobalt group element atom) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "group 9 elements") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "cobalt group element") +AnnotationAssertion(Annotation( "ChEBI") "cobalt group elements") +AnnotationAssertion( "CHEBI:33358") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cobalt group element atom") +SubClassOf( ) +SubClassOf( ) + +# Class: (rhodium atom) + +AnnotationAssertion( "A cobalt group element atom of atomic number 45.") +AnnotationAssertion( "0") +AnnotationAssertion( "Rh") +AnnotationAssertion( "InChI=1S/Rh") +AnnotationAssertion( "MHOVAHRLVXNVSD-UHFFFAOYSA-N") +AnnotationAssertion( "102.90550") +AnnotationAssertion( "102.90550") +AnnotationAssertion( "[Rh]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7440-16-6") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7440-16-6") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:2936374") +AnnotationAssertion( "WebElements:Rh") +AnnotationAssertion( "Wikipedia:Rhodium") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "rhodium") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "45Rh") +AnnotationAssertion(Annotation( "ChEBI") "Rh") +AnnotationAssertion(Annotation( "ChEBI") "rhodium") +AnnotationAssertion(Annotation( "ChEBI") "rodio") +AnnotationAssertion( "CHEBI:33359") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "rhodium atom") +SubClassOf( ) + +# Class: (nickel group element atom) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "group 10 elements") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "nickel group element") +AnnotationAssertion(Annotation( "ChEBI") "nickel group elements") +AnnotationAssertion( "CHEBI:33362") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nickel group element atom") +SubClassOf( ) +SubClassOf( ) + +# Class: (platinum) + +AnnotationAssertion( "0") +AnnotationAssertion( "Pt") +AnnotationAssertion( "InChI=1S/Pt") +AnnotationAssertion( "BASFCYQUMIYNBI-UHFFFAOYSA-N") +AnnotationAssertion( "195.078") +AnnotationAssertion( "194.96479") +AnnotationAssertion( "[Pt]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7440-06-4") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7440-06-4") +AnnotationAssertion( "WebElements:Pt") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "platinum") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "78Pt") +AnnotationAssertion(Annotation( "ChEBI") "Platin") +AnnotationAssertion(Annotation( "IUPAC") "Pt") +AnnotationAssertion(Annotation( "ChEBI") "platine") +AnnotationAssertion(Annotation( "ChEBI") "platino") +AnnotationAssertion( "CHEBI:33364") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "platinum") +SubClassOf( ) +SubClassOf( ) + +# Class: (platinum group metal atom) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "PGM") +AnnotationAssertion(Annotation( "ChEBI") "Platinmetalle") +AnnotationAssertion(Annotation( "ChEBI") "Platinoide") +AnnotationAssertion(Annotation( "ChEBI") "platinoid") +AnnotationAssertion(Annotation( "ChEBI") "platinum group metal") +AnnotationAssertion(Annotation( "ChEBI") "platinum group metals") +AnnotationAssertion(Annotation( "ChEBI") "platinum metals") +AnnotationAssertion( "CHEBI:33365") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "platinum group metal atom") +SubClassOf( ) + +# Class: (copper group element atom) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "group 11 elements") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "coinage metals") +AnnotationAssertion(Annotation( "ChEBI") "copper group element") +AnnotationAssertion(Annotation( "ChEBI") "copper group elements") +AnnotationAssertion( "CHEBI:33366") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "copper group element atom") +SubClassOf( ) +SubClassOf( ) + +# Class: (sulfur oxoacid) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "oxoacids of sulfur") +AnnotationAssertion(Annotation( "ChEBI") "sulfur oxoacids") +AnnotationAssertion( "CHEBI:33402") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sulfur oxoacid") +SubClassOf( ) +SubClassOf( ) + +# Class: (hydracid) + +AnnotationAssertion( "A hydracid is a compound which contains hydrogen that is not bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons).") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydracid") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "hydracids") +AnnotationAssertion( "CHEBI:33405") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydracid") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (pnictogen oxoacid) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "pnictogen oxoacids") +AnnotationAssertion( "CHEBI:33408") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "pnictogen oxoacid") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (sulfur oxoacid derivative) + +AnnotationAssertion(Annotation( "ChEBI") "sulfur oxoacid derivative") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "sulfur oxoacid derivatives") +AnnotationAssertion( "CHEBI:33424") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sulfur oxoacid derivative") +SubClassOf( ) +SubClassOf( ) + +# Class: (monoatomic monoanion) + +AnnotationAssertion( "-1") +AnnotationAssertion( "0.00000") +AnnotationAssertion( "[*-]") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "monoatomic monoanions") +AnnotationAssertion( "CHEBI:33429") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monoatomic monoanion") +SubClassOf( ) +SubClassOf( ) + +# Class: (elemental halogen) + +AnnotationAssertion(Annotation( "ChEBI") "elemental halogen") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "elemental halogens") +AnnotationAssertion( "CHEBI:33434") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "elemental halogen") +SubClassOf( ) + +# Class: (nitrogen oxoacid) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "nitrogen oxoacids") +AnnotationAssertion(Annotation( "ChEBI") "oxoacids of nitrogen") +AnnotationAssertion( "CHEBI:33455") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nitrogen oxoacid") +SubClassOf( ) +SubClassOf( ) + +# Class: (phosphorus oxoacid) + +AnnotationAssertion( "A pnictogen oxoacid which contains phosphorus and oxygen, at least one hydrogen atom bound to oxygen, and forms an ion by the loss of one or more protons.") +AnnotationAssertion(Annotation( "ChEBI") "phosphorus oxoacid") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Oxosaeure des Phosphors") +AnnotationAssertion(Annotation( "ChEBI") "oxoacids of phosphorus") +AnnotationAssertion(Annotation( "ChEBI") "phosphorus oxoacids") +AnnotationAssertion( "CHEBI:33457") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "phosphorus oxoacid") +SubClassOf( ) +SubClassOf( ) + +# Class: (nitrogen oxoanion) + +AnnotationAssertion(Annotation( "ChEBI") "nitrogen oxoanion") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "nitrogen oxoanions") +AnnotationAssertion(Annotation( "ChEBI") "oxoanions of nitrogen") +AnnotationAssertion( "CHEBI:33458") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nitrogen oxoanion") +SubClassOf( ) +SubClassOf( ) + +# Class: (pnictogen oxoanion) + +AnnotationAssertion(Annotation( "ChEBI") "pnictogen oxoanion") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "pnictogen oxoanions") +AnnotationAssertion( "CHEBI:33459") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "pnictogen oxoanion") +SubClassOf( ) +SubClassOf( ) + +# Class: (phosphorus oxoanion) + +AnnotationAssertion(Annotation( "ChEBI") "phosphorus oxoanion") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "oxoanions of phosphorus") +AnnotationAssertion(Annotation( "ChEBI") "phosphorus oxoanions") +AnnotationAssertion( "CHEBI:33461") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "phosphorus oxoanion") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + +# Class: (sulfur oxoanion) + +AnnotationAssertion(Annotation( "ChEBI") "sulfur oxoanion") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "oxoanions of sulfur") +AnnotationAssertion(Annotation( "ChEBI") "sulfur oxoanions") +AnnotationAssertion( "CHEBI:33482") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sulfur oxoanion") +SubClassOf( ) +SubClassOf( ) + +# Class: (chalcogen oxoacid) + +AnnotationAssertion(Annotation( "ChEBI") "chalcogen oxoacid") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "chalcogen oxoacids") +AnnotationAssertion( "CHEBI:33484") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chalcogen oxoacid") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (chalcogen oxoanion) + +AnnotationAssertion(Annotation( "ChEBI") "chalcogen oxoanion") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "chalcogen oxoanions") +AnnotationAssertion( "CHEBI:33485") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chalcogen oxoanion") +SubClassOf( ) +SubClassOf( ) + +# Class: (transition element molecular entity) + +AnnotationAssertion( "A molecular entity containing one or more atoms of a transition element.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "transition element molecular entities") +AnnotationAssertion(Annotation( "ChEBI") "transition metal molecular entity") +AnnotationAssertion( "CHEBI:33497") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "transition element molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (alkali metal cation) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "alkali metal cations") +AnnotationAssertion( "CHEBI:33504") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "alkali metal cation") +SubClassOf( ) + +# Class: (metal atom) + +AnnotationAssertion( "An atom of an element that exhibits typical metallic properties, being typically shiny, with high electrical and thermal conductivity.") +AnnotationAssertion( "CHEBI:25217") +AnnotationAssertion( "CHEBI:6788") +AnnotationAssertion( "KEGG:C00050") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:21784043") +AnnotationAssertion( "Wikipedia:Metal") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "elemental metal") +AnnotationAssertion(Annotation( "ChEBI") "elemental metals") +AnnotationAssertion(Annotation( "ChEBI") "metal element") +AnnotationAssertion(Annotation( "ChEBI") "metal elements") +AnnotationAssertion(Annotation( "ChEBI") "metals") +AnnotationAssertion( "CHEBI:33521") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "metal atom") +SubClassOf( ) + +# Class: (sulfonate) + +AnnotationAssertion( "The sulfur oxoanion formed by deprotonation of sulfonic acid.") +AnnotationAssertion( "-1") +AnnotationAssertion( "HO3S") +AnnotationAssertion( "InChI=1S/H2O3S/c1-4(2)3/h4H,(H,1,2,3)/p-1") +AnnotationAssertion( "BDHFUVZGWQCTTF-UHFFFAOYSA-M") +AnnotationAssertion( "81.07214") +AnnotationAssertion( "80.96519") +AnnotationAssertion( "[H]S([O-])(=O)=O") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:971569") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydridotrioxidosulfate(1-)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "SHO3(-)") +AnnotationAssertion(Annotation( "IUPAC") "[SHO3](-)") +AnnotationAssertion(Annotation( "ChEBI") "sulfonates") +AnnotationAssertion( "CHEBI:33543") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sulfonate") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (organosulfonic acid) + +AnnotationAssertion( "An organic derivative of sulfonic acid in which the sulfo group is linked directly to carbon.") +AnnotationAssertion( "0") +AnnotationAssertion( "HO3SR") +AnnotationAssertion( "81.07100") +AnnotationAssertion( "80.96464") +AnnotationAssertion( "OS([*])(=O)=O") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organosulfonic acids") +AnnotationAssertion(Annotation( "ChEBI") "sulfonic acids") +AnnotationAssertion( "CHEBI:33551") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organosulfonic acid") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (sulfonic acid derivative) + +AnnotationAssertion(Annotation( "ChEBI") "sulfonic acid derivative") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "derivatives of sulfonic acid") +AnnotationAssertion(Annotation( "ChEBI") "sulfonic acid derivatives") +AnnotationAssertion( "CHEBI:33552") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sulfonic acid derivative") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (organosulfonate oxoanion) + +AnnotationAssertion( "An organic anion obtained by deprotonation of the sufonate group(s) of any organosulfonic acid.") +AnnotationAssertion( "-1") +AnnotationAssertion( "O3SR") +AnnotationAssertion( "80.064") +AnnotationAssertion( "79.95681") +AnnotationAssertion( "*S([O-])(=O)=O") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organosulfonate") +AnnotationAssertion(Annotation( "ChEBI") "organosulfonate oxoanions") +AnnotationAssertion(Annotation( "ChEBI") "organosulfonates") +AnnotationAssertion( "CHEBI:33554") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organosulfonate oxoanion") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (s-block element atom) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "s-block element") +AnnotationAssertion(Annotation( "ChEBI") "s-block elements") +AnnotationAssertion( "CHEBI:33559") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "s-block element atom") +SubClassOf( ) + +# Class: (p-block element atom) + +AnnotationAssertion( "Any main group element atom belonging to the p-block of the periodic table.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "p-block element") +AnnotationAssertion(Annotation( "ChEBI") "p-block elements") +AnnotationAssertion( "CHEBI:33560") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "p-block element atom") +SubClassOf( ) + +# Class: (d-block element atom) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "d-block element") +AnnotationAssertion(Annotation( "ChEBI") "d-block elements") +AnnotationAssertion( "CHEBI:33561") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "d-block element atom") +SubClassOf( ) +SubClassOf( ) + +# Class: (carboxylic acid) + +AnnotationAssertion( "A carbon oxoacid acid carrying at least one -C(=O)OH group and having the structure RC(=O)OH, where R is any any monovalent functional group. Carboxylic acids are the most common type of organic acid.") +AnnotationAssertion( "0") +AnnotationAssertion( "CHO2R") +AnnotationAssertion( "45.01740") +AnnotationAssertion( "44.99765") +AnnotationAssertion( "OC([*])=O") +AnnotationAssertion( "CHEBI:13428") +AnnotationAssertion( "CHEBI:13627") +AnnotationAssertion( "CHEBI:23027") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17147560") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:18433345") +AnnotationAssertion( "Wikipedia:Carboxylic_acid") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "carboxylic acid") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "carboxylic acids") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Carbonsaeure") +AnnotationAssertion(Annotation( "ChEBI") "Carbonsaeuren") +AnnotationAssertion(Annotation( "ChEBI") "Karbonsaeure") +AnnotationAssertion(Annotation( "IUPAC") "RC(=O)OH") +AnnotationAssertion(Annotation( "IUPAC") "acide carboxylique") +AnnotationAssertion(Annotation( "IUPAC") "acides carboxyliques") +AnnotationAssertion(Annotation( "IUPAC") "acido carboxilico") +AnnotationAssertion(Annotation( "IUPAC") "acidos carboxilicos") +AnnotationAssertion( "CHEBI:33575") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "carboxylic acid") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (main group molecular entity) + +AnnotationAssertion( "A molecular entity containing one or more atoms from any of groups 1, 2, 13, 14, 15, 16, 17, and 18 of the periodic table.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "main group compounds") +AnnotationAssertion(Annotation( "ChEBI") "main group molecular entities") +AnnotationAssertion( "CHEBI:33579") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "main group molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (boron group molecular entity) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "boron group molecular entities") +AnnotationAssertion( "CHEBI:33581") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "boron group molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (carbon group molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "carbon group molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "carbon group molecular entities") +AnnotationAssertion( "CHEBI:33582") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "carbon group molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (noble gas molecular entity) + +AnnotationAssertion( "A main group molecular entity containing one or more atoms of any noble gas.") +AnnotationAssertion(Annotation( "ChEBI") "noble gas molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "noble gas compounds") +AnnotationAssertion(Annotation( "ChEBI") "noble gas molecular entities") +AnnotationAssertion( "CHEBI:33583") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "noble gas molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (lead molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "lead molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "lead compounds") +AnnotationAssertion(Annotation( "ChEBI") "lead molecular entities") +AnnotationAssertion( "CHEBI:33585") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "lead molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (organolead compound) + +AnnotationAssertion( "A compound containing at least one carbon-lead bond.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organolead compounds") +AnnotationAssertion( "CHEBI:33586") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organolead compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (cyclic compound) + +AnnotationAssertion( "Any molecule that consists of a series of atoms joined together to form a ring.") +AnnotationAssertion( "Wikipedia:Cyclic_compound") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "cyclic compounds") +AnnotationAssertion( "CHEBI:33595") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cyclic compound") +SubClassOf( ) + +# Class: (homocyclic compound) + +AnnotationAssertion( "A cyclic compound having as ring members atoms of the same element only.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "homocyclic compound") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "homocyclic compounds") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "isocyclic compounds") +AnnotationAssertion( "CHEBI:33597") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "homocyclic compound") +SubClassOf( ) + +# Class: (carbocyclic compound) + +AnnotationAssertion( "A homocyclic compound in which all of the ring members are carbon atoms.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "carbocyclic compound") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "carbocyclic compounds") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "carbocycle") +AnnotationAssertion( "CHEBI:33598") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "carbocyclic compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (hydrogen molecular entity) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "hydrogen compounds") +AnnotationAssertion(Annotation( "ChEBI") "hydrogen molecular entities") +AnnotationAssertion( "CHEBI:33608") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydrogen molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (aliphatic compound) + +AnnotationAssertion( "Any acyclic or cyclic, saturated or unsaturated carbon compound, excluding aromatic compounds.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "aliphatic compounds") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:33653") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "aliphatic compound") +SubClassOf( ) + +# Class: (aromatic compound) + +AnnotationAssertion( "A cyclically conjugated molecular entity with a stability (due to delocalization) significantly greater than that of a hypothetical localized structure (e.g. Kekule structure) is said to possess aromatic character.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "aromatic compounds") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "aromatic molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "aromatics") +AnnotationAssertion(Annotation( "ChEBI") "aromatische Verbindungen") +AnnotationAssertion( "CHEBI:33655") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "aromatic compound") +SubClassOf( ) + +# Class: (arene) + +AnnotationAssertion( "Any monocyclic or polycyclic aromatic hydrocarbon.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "arene") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "arenes") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "aromatic hydrocarbons") +AnnotationAssertion( "CHEBI:33658") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "arene") +SubClassOf( ) +SubClassOf( ) + +# Class: (organic aromatic compound) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic aromatic compounds") +AnnotationAssertion( "CHEBI:33659") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic aromatic compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (monocyclic compound) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "monocyclic compounds") +AnnotationAssertion( "CHEBI:33661") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monocyclic compound") +SubClassOf( ) + +# Class: (annulene) + +AnnotationAssertion( "A mancude monocyclic hydrocarbon without side chains of the general formula CnHn (n is an even number) or CnHn+1 (n is an odd number). In systematic nomenclature an annulene with seven or more carbon atoms may be named [n]annulene, where n is the number of carbon atoms.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "annulene") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "annulenes") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:33662") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "annulene") +SubClassOf( ) + +# Class: (cyclic hydrocarbon) + +AnnotationAssertion(Annotation( "ChEBI") "cyclic hydrocarbon") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "cyclic hydrocarbons") +AnnotationAssertion( "CHEBI:33663") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cyclic hydrocarbon") +SubClassOf( ) +SubClassOf( ) + +# Class: (monocyclic hydrocarbon) + +AnnotationAssertion(Annotation( "ChEBI") "monocyclic hydrocarbon") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "monocyclic hydrocarbons") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "monocyclic hydrocarbons") +AnnotationAssertion( "CHEBI:33664") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monocyclic hydrocarbon") +SubClassOf( ) + +# Class: (heteromonocyclic compound) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "heteromonocyclic compound") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "heteromonocyclic compounds") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:33670") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "heteromonocyclic compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (zinc group molecular entity) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "zinc group molecular entities") +AnnotationAssertion( "CHEBI:33673") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "zinc group molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (s-block molecular entity) + +AnnotationAssertion( "An s-block molecular entity is a molecular entity containing one or more atoms of an s-block element.") +AnnotationAssertion(Annotation( "ChEBI") "s-block molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "s-block compounds") +AnnotationAssertion(Annotation( "ChEBI") "s-block molecular entities") +AnnotationAssertion( "CHEBI:33674") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "s-block molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (p-block molecular entity) + +AnnotationAssertion( "A main group molecular entity that contains one or more atoms of a p-block element.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "p-block compounds") +AnnotationAssertion(Annotation( "ChEBI") "p-block molecular entities") +AnnotationAssertion(Annotation( "ChEBI") "p-block molecular entitiy") +AnnotationAssertion( "CHEBI:33675") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "p-block molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (d-block molecular entity) + +AnnotationAssertion( "A d-block molecular entity is a molecular entity containing one or more atoms of a d-block element.") +AnnotationAssertion(Annotation( "ChEBI") "d-block molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "d-block compounds") +AnnotationAssertion(Annotation( "ChEBI") "d-block molecular entities") +AnnotationAssertion( "CHEBI:33676") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "d-block molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (helium molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "helium molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "helium compounds") +AnnotationAssertion(Annotation( "ChEBI") "helium molecular entities") +AnnotationAssertion( "CHEBI:33679") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "helium molecular entity") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (elemental helium) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:33680") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "elemental helium") +SubClassOf( ) + +# Class: (helium(0)) + +AnnotationAssertion( "0") +AnnotationAssertion( "He") +AnnotationAssertion( "InChI=1S/He") +AnnotationAssertion( "SWQJXJOGLNCZEY-UHFFFAOYSA-N") +AnnotationAssertion( "4.00260") +AnnotationAssertion( "4.00260") +AnnotationAssertion( "[He]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7440-59-7") +AnnotationAssertion( "MolBase:922") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24383961") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24406316") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24430541") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24553240") +AnnotationAssertion( "Wikipedia:Helium") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "helium(0)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "E 939") +AnnotationAssertion(Annotation( "ChEBI") "E-939") +AnnotationAssertion(Annotation( "ChEBI") "E939") +AnnotationAssertion(Annotation( "IUPAC") "He") +AnnotationAssertion(Annotation( "MolBase") "[He]") +AnnotationAssertion(Annotation( "ChemIDplus") "atomic helium") +AnnotationAssertion(Annotation( "IUPAC") "helium") +AnnotationAssertion( "CHEBI:33681") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "helium(0)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (hydrides) + +AnnotationAssertion( "Hydrides are chemical compounds of hydrogen with other chemical elements.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:33692") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydrides") +SubClassOf( ) +SubClassOf( ) + +# Class: (oxygen hydride) + +AnnotationAssertion(Annotation( "ChEBI") "oxygen hydride") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "hydrides of oxygen") +AnnotationAssertion(Annotation( "ChEBI") "oxygen hydrides") +AnnotationAssertion( "CHEBI:33693") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oxygen hydride") +SubClassOf( ) + +# Class: (polyatomic cation) + +AnnotationAssertion( "A cation consisting of more than one atom.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "polyatomic cations") +AnnotationAssertion( "CHEBI:33702") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "polyatomic cation") +SubClassOf( ) +SubClassOf( ) + +# Class: (amino-acid cation) + +AnnotationAssertion(Annotation( "ChEBI") "amino-acid cation") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "amino acid cation") +AnnotationAssertion(Annotation( "ChEBI") "amino-acid cations") +AnnotationAssertion( "CHEBI:33703") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "amino-acid cation") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (amino acid) + +AnnotationAssertion( "A carboxylic acid containing one or more amino groups.") +AnnotationAssertion( "CHEBI:13815") +AnnotationAssertion( "CHEBI:22477") +AnnotationAssertion( "Wikipedia:Amino_acid") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Aminocarbonsaeure") +AnnotationAssertion(Annotation( "ChEBI") "Aminokarbonsaeure") +AnnotationAssertion(Annotation( "ChEBI") "Aminosaeure") +AnnotationAssertion(Annotation( "ChEBI") "amino acids") +AnnotationAssertion( "CHEBI:33709") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "amino acid") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (chromium group molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "chromium group molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "chromium group molecular entities") +AnnotationAssertion( "CHEBI:33741") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chromium group molecular entity") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (tungsten molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "tungsten molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "tungsten compounds") +AnnotationAssertion(Annotation( "ChEBI") "tungsten molecular entities") +AnnotationAssertion( "CHEBI:33742") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tungsten molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (iron group molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "iron group molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "iron group molecular entities") +AnnotationAssertion( "CHEBI:33744") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "iron group molecular entity") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (copper group molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "copper group molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "copper group molecular entities") +AnnotationAssertion( "CHEBI:33745") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "copper group molecular entity") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (nickel group molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "nickel group molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "nickel group molecular entities") +AnnotationAssertion( "CHEBI:33747") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nickel group molecular entity") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (platinum molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "platinum molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "platinum compounds") +AnnotationAssertion(Annotation( "ChEBI") "platinum molecular entities") +AnnotationAssertion( "CHEBI:33749") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "platinum molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (cobalt group molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "cobalt group molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "cobalt group molecular entities") +AnnotationAssertion( "CHEBI:33767") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cobalt group molecular entity") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (titanium group molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "titanium group molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "titanium group molecular entities") +AnnotationAssertion( "CHEBI:33768") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "titanium group molecular entity") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (scandium group molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "scandium group molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "scandium group compounds") +AnnotationAssertion(Annotation( "ChEBI") "scandium group molecular entities") +AnnotationAssertion( "CHEBI:33773") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "scandium group molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (organic hydroxy compound) + +AnnotationAssertion( "An organic compound having at least one hydroxy group attached to a carbon atom.") +AnnotationAssertion( "CHEBI:64710") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydroxy compounds") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic alcohol") +AnnotationAssertion(Annotation( "ChEBI") "organic hydroxy compounds") +AnnotationAssertion( "CHEBI:33822") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic hydroxy compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (organic cyclic compound) + +AnnotationAssertion( "Any organic molecule that consists of atoms connected in the form of a ring.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic cyclic compounds") +AnnotationAssertion( "CHEBI:33832") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic cyclic compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (heteroarene) + +AnnotationAssertion( "A heterocyclic compound formally derived from an arene by replacement of one or more methine (-C=) and/or vinylene (-CH=CH-) groups by trivalent or divalent heteroatoms, respectively, in such a way as to maintain the continuous pi-electron system characteristic of aromatic systems and a number of out-of-plane pi-electrons corresponding to the Hueckel rule (4n+2).") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "heteroarenes") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "hetarenes") +AnnotationAssertion( "CHEBI:33833") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "heteroarene") +SubClassOf( ) +SubClassOf( ) + +# Class: (benzenoid aromatic compound) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "benzenoid aromatic compounds") +AnnotationAssertion(Annotation( "ChEBI") "benzenoid compound") +AnnotationAssertion( "CHEBI:33836") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "benzenoid aromatic compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (aromatic annulene) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "aromatic annulenes") +AnnotationAssertion( "CHEBI:33842") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "aromatic annulene") +SubClassOf( ) +SubClassOf( ) + +# Class: (monocyclic arene) + +AnnotationAssertion( "A monocyclic aromatic hydrocarbon.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "monocyclic arenes") +AnnotationAssertion( "CHEBI:33847") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monocyclic arene") +SubClassOf( ) + +# Class: (transition element coordination entity) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "transition element coordination entities") +AnnotationAssertion(Annotation( "ChEBI") "transition metal coordination compounds") +AnnotationAssertion(Annotation( "ChEBI") "transition metal coordination entities") +AnnotationAssertion( "CHEBI:33861") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "transition element coordination entity") +SubClassOf( ) +SubClassOf( ) + +# Class: (platinum coordination entity) + +AnnotationAssertion(Annotation( "ChEBI") "platinum coordination entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "platinum coordination compounds") +AnnotationAssertion(Annotation( "ChEBI") "platinum coordination entities") +AnnotationAssertion( "CHEBI:33862") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "platinum coordination entity") +SubClassOf( ) +SubClassOf( ) + +# Class: (rhodium molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "rhodium molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "rhodium compounds") +AnnotationAssertion(Annotation( "ChEBI") "rhodium molecular entities") +AnnotationAssertion( "CHEBI:33887") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "rhodium molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (rhodium coordination entity) + +AnnotationAssertion(Annotation( "ChEBI") "rhodium coordination entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "rhodium coordination compound") +AnnotationAssertion(Annotation( "ChEBI") "rhodium coordination compounds") +AnnotationAssertion( "CHEBI:33889") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "rhodium coordination entity") +SubClassOf( ) +SubClassOf( ) + +# Class: (iron coordination entity) + +AnnotationAssertion(Annotation( "ChEBI") "iron coordination entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "iron coordination compounds") +AnnotationAssertion(Annotation( "ChEBI") "iron coordination entities") +AnnotationAssertion( "CHEBI:33892") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "iron coordination entity") +SubClassOf( ) +SubClassOf( ) + +# Class: (reagent) + +AnnotationAssertion( "A substance used in a chemical reaction to detect, measure, examine, or produce other substances.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "reagent") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "reactif") +AnnotationAssertion(Annotation( "IUPAC") "reactivo") +AnnotationAssertion(Annotation( "ChEBI") "reagents") +AnnotationAssertion( "CHEBI:33893") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "reagent") +SubClassOf( ) + +# Class: (macronutrient) + +AnnotationAssertion( "Any nutrient required in large quantities by organisms throughout their life in order to orchestrate a range of physiological functions. Macronutrients are usually chemical elements (carbon, hydrogen, nitrogen, oxygen, phosphorus and sulfur) that humans consume in the largest quantities. Calcium, sodium, magnesium and potassium are sometimes included as macronutrients because they are required in relatively large quantities compared with other vitamins and minerals.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "macronutrients") +AnnotationAssertion( "CHEBI:33937") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "macronutrient") +SubClassOf( ) + +# Class: (halide salt) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "halide salts") +AnnotationAssertion(Annotation( "ChEBI") "halides") +AnnotationAssertion( "CHEBI:33958") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "halide salt") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (silver molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "silver molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "silver compounds") +AnnotationAssertion(Annotation( "ChEBI") "silver molecular entities") +AnnotationAssertion( "CHEBI:33964") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "silver molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (silver salt) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "silver salts") +AnnotationAssertion( "CHEBI:33968") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "silver salt") +SubClassOf( ) + +# Class: (morpholine) + +AnnotationAssertion( "An organic heteromonocyclic compound whose six-membered ring contains four carbon atoms and one nitrogen atom and one oxygen atom that lies opposite to each other; the parent compound of the morpholine family.") +AnnotationAssertion( "0") +AnnotationAssertion( "C4H9NO") +AnnotationAssertion( "InChI=1S/C4H9NO/c1-3-6-4-2-5-1/h5H,1-4H2") +AnnotationAssertion( "YNAVUWVOSKDBBP-UHFFFAOYSA-N") +AnnotationAssertion( "87.122") +AnnotationAssertion( "87.06841") +AnnotationAssertion( "C1COCCN1") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:102549") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:110-91-8") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:110-91-8") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:110-91-8") +AnnotationAssertion( "Chemspider:13837537") +AnnotationAssertion( "DrugBank:DB13669") +AnnotationAssertion( "FooDB:FDB008207") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1803") +AnnotationAssertion( "HMDB:HMDB0031581") +AnnotationAssertion( "KEGG:C14452") +AnnotationAssertion( "PDBeChem:6LR") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:15017096") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:2699898") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:31512284") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:31978684") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:32017384") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:33459557") +AnnotationAssertion( "Wikipedia:Morpholine") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Morpholine") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "morpholine") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "1,4-oxazinane") +AnnotationAssertion(Annotation( "ChemIDplus") "1-oxa-4-azacyclohexane") +AnnotationAssertion(Annotation( "ChemIDplus") "diethylene imidoxide") +AnnotationAssertion(Annotation( "ChemIDplus") "diethylene oximide") +AnnotationAssertion(Annotation( "ChemIDplus") "diethylenimide oxide") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "tetrahydro-1,4-oxazine") +AnnotationAssertion(Annotation( "ChemIDplus") "tetrahydro-p-oxazine") +AnnotationAssertion( "CHEBI:34856") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "morpholine") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (nitrogen hydride) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "nitrogen hydrides") +AnnotationAssertion( "CHEBI:35106") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nitrogen hydride") +SubClassOf( ) +SubClassOf( ) + +# Class: (azane) + +AnnotationAssertion( "Saturated acyclic nitrogen hydrides having the general formula NnHn+2.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "azanes") +AnnotationAssertion( "CHEBI:35107") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "azane") +SubClassOf( ) + +# Class: (inhibitor) + +AnnotationAssertion( "A substance that diminishes the rate of a chemical reaction.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "inhibitor") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "inhibidor") +AnnotationAssertion(Annotation( "ChEBI") "inhibiteur") +AnnotationAssertion(Annotation( "ChEBI") "inhibitors") +AnnotationAssertion( "CHEBI:35222") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "inhibitor") +SubClassOf( ) + +# Class: (catalyst) + +AnnotationAssertion( "A substance that increases the rate of a reaction without modifying the overall standard Gibbs energy change in the reaction.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "catalyst") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Katalysator") +AnnotationAssertion(Annotation( "ChEBI") "catalizador") +AnnotationAssertion(Annotation( "ChEBI") "catalyseur") +AnnotationAssertion( "CHEBI:35223") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "catalyst") +SubClassOf( ) + +# Class: (fossil fuel) + +AnnotationAssertion( "A fuel such as coal, oil and natural gas which has formed over many years through the decomposition of deposited vegetation which was under extreme pressure of an overburden of earth.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "fossil fuel") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:35230") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fossil fuel") +SubClassOf( ) + +# Class: (tungsten coordination entity) + +AnnotationAssertion(Annotation( "ChEBI") "tungsten coordination entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "tungsten coordination compounds") +AnnotationAssertion(Annotation( "ChEBI") "tungsten coordination entities") +AnnotationAssertion( "CHEBI:35233") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tungsten coordination entity") +SubClassOf( ) +SubClassOf( ) + +# Class: (quaternary ammonium ion) + +AnnotationAssertion( "A derivative of ammonium, NH4(+), in which all four of the hydrogens bonded to nitrogen have been replaced with univalent (usually organyl) groups.") +AnnotationAssertion( "+1") +AnnotationAssertion( "NR4") +AnnotationAssertion( "14.00670") +AnnotationAssertion( "14.00307") +AnnotationAssertion( "[*][N+]([*])([*])[*]") +AnnotationAssertion( "CHEBI:26470") +AnnotationAssertion( "CHEBI:8693") +AnnotationAssertion( "KEGG:C06703") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "quaternary ammonium ion") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Quaternary amine") +AnnotationAssertion(Annotation( "UniProt") "a quaternary ammonium") +AnnotationAssertion(Annotation( "ChEBI") "quaternary ammonium ions") +AnnotationAssertion( "CHEBI:35267") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "quaternary ammonium ion") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (quaternary ammonium salt) + +AnnotationAssertion( "Derivatives of ammonium compounds, (NH4(+))Y(-), in which all four of the hydrogens bonded to nitrogen have been replaced with univalent (usually organyl) groups.") +AnnotationAssertion( "CHEBI:26468") +AnnotationAssertion( "CHEBI:35268") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "quaternary ammonium compounds") +AnnotationAssertion(Annotation( "ChEBI") "quaternary ammonium salt") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "quaternary ammonium compound") +AnnotationAssertion(Annotation( "ChEBI") "quaternary ammonium salts") +AnnotationAssertion( "CHEBI:35273") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "quaternary ammonium salt") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (ammonium ion derivative) + +AnnotationAssertion( "A derivative of ammonium, NH4(+), in which one (or more) of the hydrogens bonded to the nitrogen have been replaced with univalent organyl groups. The substituting carbon of the organyl group must not itself be directly attached to a heteroatom (thereby excluding protonated amides, hemiaminals, etc).") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "ammonium ion derivatives") +AnnotationAssertion(Annotation( "ChEBI") "azanium ion derivative") +AnnotationAssertion(Annotation( "ChEBI") "azanium ion derivatives") +AnnotationAssertion( "CHEBI:35274") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ammonium ion derivative") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (ammonium compound) + +AnnotationAssertion( "Compounds (NH4(+))Y(-) and derivatives, in which one or more of the hydrogens bonded to nitrogen have been replaced with univalent groups.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "azanium compounds") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "ammonium compounds") +AnnotationAssertion(Annotation( "IUPAC") "ammonium compounds") +AnnotationAssertion( "CHEBI:35276") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ammonium compound") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (organonitrogen compound) + +AnnotationAssertion( "Any heteroorganic entity containing at least one carbon-nitrogen bond.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "organonitrogen compounds") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organonitrogens") +AnnotationAssertion( "CHEBI:35352") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organonitrogen compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (fatty acid) + +AnnotationAssertion( "Any aliphatic monocarboxylic acid derived from or contained in esterified form in an animal or vegetable fat, oil or wax. Natural fatty acids commonly have a chain of 4 to 28 carbons (usually unbranched and even-numbered), which may be saturated or unsaturated. By extension, the term is sometimes used to embrace all acyclic aliphatic carboxylic acids.") +AnnotationAssertion( "0") +AnnotationAssertion( "CHO2R") +AnnotationAssertion( "45.01740") +AnnotationAssertion( "44.99765") +AnnotationAssertion( "OC([*])=O") +AnnotationAssertion( "CHEBI:13633") +AnnotationAssertion( "CHEBI:24024") +AnnotationAssertion( "CHEBI:4984") +AnnotationAssertion( "KEGG:C00162") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:14287444") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:14300208") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:14328676") +AnnotationAssertion( "Wikipedia:Fatty_acid") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Fatty acid") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "fatty acids") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Fettsaeure") +AnnotationAssertion(Annotation( "ChEBI") "Fettsaeuren") +AnnotationAssertion(Annotation( "ChEBI") "acide gras") +AnnotationAssertion(Annotation( "ChemIDplus") "acides gras") +AnnotationAssertion(Annotation( "ChEBI") "acido graso") +AnnotationAssertion(Annotation( "ChEBI") "acidos grasos") +AnnotationAssertion(Annotation( "ChEBI") "fatty acids") +AnnotationAssertion( "CHEBI:35366") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fatty acid") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (transition element oxoanion) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "transition element oxoanions") +AnnotationAssertion(Annotation( "ChEBI") "transition metal oxoanion") +AnnotationAssertion(Annotation( "ChEBI") "transition metal oxoanions") +AnnotationAssertion( "CHEBI:35405") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "transition element oxoanion") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + +# Class: (oxoanion) + +AnnotationAssertion( "An oxoanion is an anion derived from an oxoacid by loss of hydron(s) bound to oxygen.") +AnnotationAssertion( "CHEBI:33274") +AnnotationAssertion( "CHEBI:33436") +AnnotationAssertion(Annotation( "ChEBI") "oxoanion") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "oxoacid anions") +AnnotationAssertion(Annotation( "ChEBI") "oxoanions") +AnnotationAssertion( "CHEBI:35406") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oxoanion") +SubClassOf( ) +SubClassOf( ) + +# Class: (antiinfective agent) + +AnnotationAssertion( "A substance used in the prophylaxis or therapy of infectious diseases.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "anti-infective agents") +AnnotationAssertion(Annotation( "ChEBI") "anti-infective drugs") +AnnotationAssertion(Annotation( "ChEBI") "antiinfective agents") +AnnotationAssertion(Annotation( "ChEBI") "antiinfective drug") +AnnotationAssertion( "CHEBI:35441") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "antiinfective agent") +SubClassOf( ) + +# Class: (alkali metal salt) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "alkali metal salts") +AnnotationAssertion( "CHEBI:35479") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "alkali metal salt") +SubClassOf( ) +SubClassOf( ) + +# Class: (fluorobenzenes) + +AnnotationAssertion( "Any fluoroarene that is a benzene or a substituted benzene carrying at least one fluoro group.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:35496") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluorobenzenes") +SubClassOf( ) +SubClassOf( ) + +# Class: (fluoroalkanoic acid) + +AnnotationAssertion( "Any organofluorine compound that is the perfluorinated derivative of any alkanoic acid.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "fluoroalkanoic acids") +AnnotationAssertion( "CHEBI:35551") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluoroalkanoic acid") +SubClassOf( ) +SubClassOf( ) + +# Class: (heterocyclic organic fundamental parent) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "heterocyclic parent hydrides") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "heterocyclic fundamental parent") +AnnotationAssertion(Annotation( "ChEBI") "heterocyclic organic fundamental parents") +AnnotationAssertion(Annotation( "ChEBI") "organic heterocyclic fundamental parents") +AnnotationAssertion( "CHEBI:35552") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "heterocyclic organic fundamental parent") +SubClassOf( ) + +# Class: (mancude organic heteromonocyclic parent) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "mancude organic heteromonocyclic parents") +AnnotationAssertion(Annotation( "ChEBI") "mancude-ring organic heteromonocyclic parents") +AnnotationAssertion( "CHEBI:35555") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mancude organic heteromonocyclic parent") +SubClassOf( ) +SubClassOf( ) + +# Class: (mancude ring) + +AnnotationAssertion( "Any molecular entity that consists of a ring having (formally) the maximum number of noncumulative double bonds.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "mancude-ring systems") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "mancude rings") +AnnotationAssertion(Annotation( "IUPAC") "mancunide-ring systems") +AnnotationAssertion( "CHEBI:35568") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mancude ring") +SubClassOf( ) + +# Class: (mancude organic heterocyclic parent) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "mancude organic heterocyclic parents") +AnnotationAssertion(Annotation( "ChEBI") "mancude-ring organic heterocyclic parents") +AnnotationAssertion( "CHEBI:35571") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mancude organic heterocyclic parent") +SubClassOf( ) +SubClassOf( ) + +# Class: (organic mancude parent) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic mancude parents") +AnnotationAssertion(Annotation( "ChEBI") "organic mancude-ring parents") +AnnotationAssertion( "CHEBI:35573") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic mancude parent") +SubClassOf( ) +SubClassOf( ) + +# Class: (carbon oxoacid) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "carbon oxoacids") +AnnotationAssertion(Annotation( "ChEBI") "oxoacids of carbon") +AnnotationAssertion( "CHEBI:35605") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "carbon oxoacid") +SubClassOf( ) +SubClassOf( ) + +# Class: (ester) + +AnnotationAssertion( "A compound formally derived from an oxoacid RkE(=O)l(OH)m (l > 0) and an alcohol, phenol, heteroarenol, or enol by linking with formal loss of water from an acidic hydroxy group of the former and a hydroxy group of the latter.") +AnnotationAssertion( "CHEBI:23960") +AnnotationAssertion( "CHEBI:4859") +AnnotationAssertion( "KEGG:C00287") +AnnotationAssertion( "Wikipedia:Ester") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Ester") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "esters") +AnnotationAssertion( "CHEBI:35701") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ester") +SubClassOf( ) + +# Class: (nitro compound) + +AnnotationAssertion( "A compound having a nitro group, -NO2 (free valence on nitrogen), which may be attached to carbon, nitrogen (as in nitramines), or oxygen (as in nitrates), among other elements (in the absence of specification, C-nitro compounds are usually implied).") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "nitro compounds") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:35715") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nitro compound") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (C-nitro compound) + +AnnotationAssertion( "A nitro compound having the nitro group (-NO2) attached to a carbon atom.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "C-nitro compounds") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:35716") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "C-nitro compound") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (antifungal agent) + +AnnotationAssertion( "An antimicrobial agent that destroys fungi by suppressing their ability to grow or reproduce.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "antifungal") +AnnotationAssertion(Annotation( "ChEBI") "antifungal agents") +AnnotationAssertion(Annotation( "ChEBI") "antifungal drug") +AnnotationAssertion(Annotation( "ChEBI") "antifungal drugs") +AnnotationAssertion(Annotation( "ChEBI") "antifungals") +AnnotationAssertion( "CHEBI:35718") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "antifungal agent") +SubClassOf( ) + +# Class: (osmium coordination entity) + +AnnotationAssertion(Annotation( "ChEBI") "osmium coordination entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "osmium coordination compounds") +AnnotationAssertion(Annotation( "ChEBI") "osmium coordination entities") +AnnotationAssertion( "CHEBI:35731") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "osmium coordination entity") +SubClassOf( ) +SubClassOf( ) + +# Class: (osmium molecular entity) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "osmium compounds") +AnnotationAssertion(Annotation( "ChEBI") "osmium molecular entities") +AnnotationAssertion(Annotation( "ChEBI") "osmium molecular entitiy") +AnnotationAssertion( "CHEBI:35732") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "osmium molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (monocarboxylic acid anion) + +AnnotationAssertion( "A carboxylic acid anion formed when the carboxy group of a monocarboxylic acid is deprotonated.") +AnnotationAssertion( "-1") +AnnotationAssertion( "CO2R") +AnnotationAssertion( "44.01000") +AnnotationAssertion( "43.98983") +AnnotationAssertion( "[O-]C([*])=O") +AnnotationAssertion( "CHEBI:13657") +AnnotationAssertion( "CHEBI:25382") +AnnotationAssertion( "CHEBI:3407") +AnnotationAssertion( "KEGG:C00060") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Carboxylate") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Monocarboxylate") +AnnotationAssertion(Annotation( "UniProt") "a monocarboxylate") +AnnotationAssertion(Annotation( "ChEBI") "monocarboxylates") +AnnotationAssertion(Annotation( "ChEBI") "monocarboxylic acid anions") +AnnotationAssertion( "CHEBI:35757") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monocarboxylic acid anion") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (phosphate ion) + +AnnotationAssertion( "A phosphorus oxoanion that is the conjugate base of phosphoric acid.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Pi") +AnnotationAssertion(Annotation( "ChEBI") "phosphate") +AnnotationAssertion(Annotation( "ChEBI") "phosphate ions") +AnnotationAssertion( "CHEBI:35780") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "phosphate ion") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (pnictogen hydride) + +AnnotationAssertion(Annotation( "ChEBI") "pnictogen hydride") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "pnictogen hydrides") +AnnotationAssertion( "CHEBI:35881") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "pnictogen hydride") +SubClassOf( ) +SubClassOf( ) + +# Class: (phosphine) + +AnnotationAssertion( "Phosphane (PH3) and compounds derived from it by substituting one, two or three hydrogen atoms by hydrocarbyl groups: RPH2, R2PH, R3P (R =/= H) are called primary, secondary and tertiary phosphines, respectively. A specific phosphine is preferably named as a substituted phosphane.") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:14629181") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:21241104") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:21399776") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:21699183") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:21714575") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:21854058") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:21957974") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "phosphines") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "fosfinas") +AnnotationAssertion(Annotation( "ChEBI") "phosphines") +AnnotationAssertion( "CHEBI:35883") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "phosphine") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (tertiary phosphine) + +AnnotationAssertion( "A compound derived from phosphane by substituting three hydrogen atoms by hydrocarbyl groups.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "tertiary phosphines") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "fosfina terciaria") +AnnotationAssertion(Annotation( "IUPAC") "fosfinas terciarias") +AnnotationAssertion(Annotation( "IUPAC") "phosphines tertiaires") +AnnotationAssertion( "CHEBI:35886") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tertiary phosphine") +SubClassOf( ) + +# Class: (chloroethanes) + +AnnotationAssertion( "A chloroalkane that is ethane in which one or more of the hydrogens is replaced by chlorine.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:36016") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chloroethanes") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (tungsten oxoanion) + +AnnotationAssertion(Annotation( "ChEBI") "tungsten oxoanion") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "tungsten oxoanions") +AnnotationAssertion( "CHEBI:36270") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tungsten oxoanion") +SubClassOf( ) +SubClassOf( ) + +# Class: (hydrogentungstate) + +AnnotationAssertion( "A monovalent inorganic anion that consists of tungstic acid where one of the two OH groups has been deprotonated.") +AnnotationAssertion( "-1") +AnnotationAssertion( "HO4W") +AnnotationAssertion( "InChI=1S/H2O.3O.W/h1H2;;;;/q;;;-1;+1/p-1") +AnnotationAssertion( "QGUPUDUDXSOSNF-UHFFFAOYSA-M") +AnnotationAssertion( "248.84554") +AnnotationAssertion( "248.93896") +AnnotationAssertion( "[H]O[W]([O-])(=O)=O") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:26402") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydrogen(tetraoxidotungstate)(1-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydroxidodioxidotungstate(1-)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "HWO4(-)") +AnnotationAssertion(Annotation( "ChEBI") "[WO3(OH)](-)") +AnnotationAssertion( "CHEBI:36271") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydrogentungstate") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (tungstic acid) + +AnnotationAssertion( "0") +AnnotationAssertion( "H2O4W") +AnnotationAssertion( "InChI=1S/2H2O.2O.W/h2*1H2;;;/q;;;;+2/p-2") +AnnotationAssertion( "CMPGARWFYBADJI-UHFFFAOYSA-L") +AnnotationAssertion( "249.85348") +AnnotationAssertion( "249.94624") +AnnotationAssertion( "[H]O[W](=O)(=O)O[H]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7783-03-1") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:82224") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "dihydroxidodioxidotungsten") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "H2WO4") +AnnotationAssertion(Annotation( "ChEBI") "[WO2(OH)2]") +AnnotationAssertion(Annotation( "ChemIDplus") "dihydrogen wolframate") +AnnotationAssertion(Annotation( "ChemIDplus") "tungstic(VI) acid") +AnnotationAssertion( "CHEBI:36272") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tungstic acid") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (lepton) + +AnnotationAssertion( "Lepton is a fermion that does not experience the strong force (strong interaction). The term is derived from the Greek lambdaepsilonpitauomicronsigma (small, thin).") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "leptons") +AnnotationAssertion( "CHEBI:36338") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "lepton") +SubClassOf( ) +SubClassOf( ) + +# Class: (baryon) + +AnnotationAssertion( "Baryon is a fermion that does experience the strong force (strong interaction). The term is derived from the Greek betaalpharhoupsilonsigma (heavy).") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "baryons") +AnnotationAssertion( "CHEBI:36339") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "baryon") +SubClassOf( ) +SubClassOf( ) + +# Class: (fermion) + +AnnotationAssertion( "Particle of half-integer spin quantum number following Fermi-Dirac statistics. Fermions are named after Enrico Fermi.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "fermion") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "fermions") +AnnotationAssertion( "CHEBI:36340") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fermion") +SubClassOf( ) + +# Class: (subatomic particle) + +AnnotationAssertion( "A particle smaller than an atom.") +AnnotationAssertion( "Wikipedia:Subatomic_particle") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "subatomic particles") +AnnotationAssertion( "CHEBI:36342") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "subatomic particle") + +# Class: (composite particle) + +AnnotationAssertion( "A subatomic particle known to have substructure (i.e. consisting of smaller particles).") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "composite particles") +AnnotationAssertion( "CHEBI:36343") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "composite particle") +SubClassOf( ) + +# Class: (hadron) + +AnnotationAssertion( "Hadron is a subatomic particle which experiences the strong force.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "hadrons") +AnnotationAssertion( "CHEBI:36344") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hadron") +SubClassOf( ) + +# Class: (nuclear particle) + +AnnotationAssertion( "A nucleus or any of its constituents in any of their energy states.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "nuclear particle") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:36347") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nuclear particle") +SubClassOf( ) + +# Class: (polyatomic entity) + +AnnotationAssertion( "Any molecular entity consisting of more than one atom.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "polyatomic entities") +AnnotationAssertion( "CHEBI:36357") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "polyatomic entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (polyatomic ion) + +AnnotationAssertion( "An ion consisting of more than one atom.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "polyatomic ions") +AnnotationAssertion( "CHEBI:36358") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "polyatomic ion") +SubClassOf( ) +SubClassOf( ) + +# Class: (phosphorus oxoacid derivative) + +AnnotationAssertion(Annotation( "ChEBI") "phosphorus oxoacid derivative") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:36359") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "phosphorus oxoacid derivative") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (phosphorus oxoacids and derivatives) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:36360") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "phosphorus oxoacids and derivatives") +SubClassOf( ) + +# Class: (saturated organic heterocyclic parent) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "saturated heterocyclic parent hydride") +AnnotationAssertion(Annotation( "ChEBI") "saturated heterocyclic parent hydrides") +AnnotationAssertion(Annotation( "ChEBI") "saturated organic heterocyclic parents") +AnnotationAssertion( "CHEBI:36388") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "saturated organic heterocyclic parent") +SubClassOf( ) + +# Class: (saturated organic heteromonocyclic parent) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "saturated heteromonocyclic parent hydride") +AnnotationAssertion(Annotation( "ChEBI") "saturated heteromonocyclic parent hydrides") +AnnotationAssertion(Annotation( "ChEBI") "saturated organic heteromonocyclic parents") +AnnotationAssertion( "CHEBI:36389") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "saturated organic heteromonocyclic parent") +SubClassOf( ) +SubClassOf( ) + +# Class: (zinc group coordination entity) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "zinc group coordination compounds") +AnnotationAssertion(Annotation( "ChEBI") "zinc group coordination entities") +AnnotationAssertion( "CHEBI:36563") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "zinc group coordination entity") +SubClassOf( ) +SubClassOf( ) + +# Class: (cadmium coordination entity) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "cadmium coordination compounds") +AnnotationAssertion(Annotation( "ChEBI") "cadmium coordination entities") +AnnotationAssertion( "CHEBI:36565") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cadmium coordination entity") +SubClassOf( ) +SubClassOf( ) + +# Class: (carbonyl compound) + +AnnotationAssertion( "Any compound containing the carbonyl group, C=O. The term is commonly used in the restricted sense of aldehydes and ketones, although it actually includes carboxylic acids and derivatives.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "carbonyl compounds") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:36586") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "carbonyl compound") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (organic oxo compound) + +AnnotationAssertion( "Organic compounds containing an oxygen atom, =O, doubly bonded to carbon or another element.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "oxo compounds") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic oxo compounds") +AnnotationAssertion( "CHEBI:36587") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic oxo compound") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (heterone) + +AnnotationAssertion( "Organic compounds having an oxygen atom formally doubly bonded to a heteroatom.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "heterone") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "heterones") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "heterones") +AnnotationAssertion( "CHEBI:36598") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "heterone") +SubClassOf( ) + +# Class: (acyclic heterone) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:36599") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "acyclic heterone") +SubClassOf( ) + +# Class: (triphenylphosphane oxide) + +AnnotationAssertion( "A phosphine oxide in which the substituents on phosphorus are three phenyl groups.") +AnnotationAssertion( "0") +AnnotationAssertion( "C18H15OP") +AnnotationAssertion( "InChI=1S/C18H15OP/c19-20(16-10-4-1-5-11-16,17-12-6-2-7-13-17)18-14-8-3-9-15-18/h1-15H") +AnnotationAssertion( "FIQMHBFVRAXMOP-UHFFFAOYSA-N") +AnnotationAssertion( "278.28486") +AnnotationAssertion( "278.08605") +AnnotationAssertion( "O=P(c1ccccc1)(c1ccccc1)c1ccccc1") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:745854") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:791-28-6") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:791-28-6") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:6758") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24280613") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24285309") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:745854") +AnnotationAssertion( "Wikipedia:Triphenylphosphine_oxide") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "triphenyl-lambda(5)-phosphanone") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "triphenylphosphane oxide") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "Triphenylphosphanoxid") +AnnotationAssertion(Annotation( "ChemIDplus") "triphenyl phosphine oxide") +AnnotationAssertion(Annotation( "ChemIDplus") "triphenyl phosphorus oxide") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "triphenylphosphanoxide") +AnnotationAssertion(Annotation( "ChemIDplus") "triphenylphosphine oxide") +AnnotationAssertion( "CHEBI:36601") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "triphenylphosphane oxide") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (metal carbonyl) + +AnnotationAssertion( "A coordination entity that is coordination complex of a metals with one or more carbon monoxide ligands.") +AnnotationAssertion( "Wikipedia:Metal_carbonyl") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "metal carbonyls") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "metal carbonyls") +AnnotationAssertion( "CHEBI:36604") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "metal carbonyl") +SubClassOf( ) + +# Class: (organotellurium compound) + +AnnotationAssertion(Annotation( "ChEBI") "organotellurium compound") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organotellurium compounds") +AnnotationAssertion( "CHEBI:36652") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organotellurium compound") +SubClassOf( ) + +# Class: (organochlorine compound) + +AnnotationAssertion( "An organochlorine compound is a compound containing at least one carbon-chlorine bond.") +AnnotationAssertion( "0") +AnnotationAssertion( "ClR") +AnnotationAssertion( "35.453") +AnnotationAssertion( "34.96885") +AnnotationAssertion( "Cl[*]") +AnnotationAssertion( "MetaCyc:Chlorides") +AnnotationAssertion( "Wikipedia:Organochloride") +AnnotationAssertion(Annotation( "ChEBI") "organochlorine compound") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "UniProt") "an organochlorine molecule") +AnnotationAssertion(Annotation( "ChEBI") "chloroorganic compounds") +AnnotationAssertion(Annotation( "ChEBI") "chlororganische Verbindungen") +AnnotationAssertion(Annotation( "ChEBI") "organochloride") +AnnotationAssertion(Annotation( "ChEBI") "organochloride compound") +AnnotationAssertion(Annotation( "ChEBI") "organochloride compounds") +AnnotationAssertion(Annotation( "ChEBI") "organochlorides") +AnnotationAssertion(Annotation( "ChEBI") "organochlorine compounds") +AnnotationAssertion( "CHEBI:36683") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organochlorine compound") +SubClassOf( ) +SubClassOf( ) + +# Class: ((trifluoromethyl)benzene) + +AnnotationAssertion( "A fluorohydrocarbon that is fluoroform in which the hydrogen is substituted by a phenyl group.") +AnnotationAssertion( "0") +AnnotationAssertion( "C7H5F3") +AnnotationAssertion( "InChI=1S/C7H5F3/c8-7(9,10)6-4-2-1-3-5-6/h1-5H") +AnnotationAssertion( "GETTZEONDQJALK-UHFFFAOYSA-N") +AnnotationAssertion( "146.10980") +AnnotationAssertion( "146.03433") +AnnotationAssertion( "FC(F)(F)c1ccccc1") +AnnotationAssertion(Annotation( "ChemIDplus") "Beilstein:1906908") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:98-08-8") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:98-08-8") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:3670") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:11671431") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:20958547") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24267073") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24669762") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1906908") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "(trifluoromethyl)benzene") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "C6H5CF3") +AnnotationAssertion(Annotation( "ChEBI") "CF3Ph") +AnnotationAssertion(Annotation( "ChEBI") "PhCF3") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "alpha,alpha,alpha-trifluorotoluene") +AnnotationAssertion(Annotation( "ChemIDplus") "benzotrifluoride") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "omega-trifluorotoluene") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "phenylfluoroform") +AnnotationAssertion(Annotation( "ChemIDplus") "trifluoromethylbenzene") +AnnotationAssertion( "CHEBI:36810") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "(trifluoromethyl)benzene") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (pseudohalo group) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "pseudohalide group") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "halogenoid group") +AnnotationAssertion(Annotation( "ChEBI") "pseudohalido group") +AnnotationAssertion(Annotation( "ChEBI") "pseudohalo groups") +AnnotationAssertion(Annotation( "IUPAC") "pseudohalogen group") +AnnotationAssertion( "CHEBI:36823") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "pseudohalo group") +SubClassOf( ) + +# Class: (pseudohalide anion) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "pseudohalide ions") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "pseudohalide anions") +AnnotationAssertion(Annotation( "ChEBI") "pseudohalides") +AnnotationAssertion(Annotation( "ChEBI") "pseudohalogen anion") +AnnotationAssertion(Annotation( "ChEBI") "pseudohalogen ion") +AnnotationAssertion( "CHEBI:36828") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "pseudohalide anion") +SubClassOf( ) + +# Class: (polyatomic monoanion) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "polyatomic monoanions") +AnnotationAssertion( "CHEBI:36829") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "polyatomic monoanion") +SubClassOf( ) +SubClassOf( ) + +# Class: (monoanion) + +AnnotationAssertion( "-1") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "monoanions") +AnnotationAssertion( "CHEBI:36830") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monoanion") +SubClassOf( ) + +# Class: (hydrogen isocyanide) + +AnnotationAssertion( "0") +AnnotationAssertion( "CHN") +AnnotationAssertion( "InChI=1S/CHN/c1-2/h2H") +AnnotationAssertion( "QIUBLANJVAOHHY-UHFFFAOYSA-N") +AnnotationAssertion( "27.02538") +AnnotationAssertion( "27.01090") +AnnotationAssertion( "[C-]#[NH+]") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:2069401") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:6914-07-4") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:113") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "hydrogen isocyanide") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "nitriliomethanide") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "CNH") +AnnotationAssertion(Annotation( "IUPAC") "HN(+)#C(-)") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "HNC") +AnnotationAssertion(Annotation( "ChEBI") "hydroisocyanic acid") +AnnotationAssertion( "CHEBI:36856") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydrogen isocyanide") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (diatomic fluorine) + +AnnotationAssertion( "0") +AnnotationAssertion( "F2") +AnnotationAssertion( "37.997") +AnnotationAssertion( "37.99681") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:36890") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "diatomic fluorine") +SubClassOf( ) + +# Class: (elemental fluorine) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:36892") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "elemental fluorine") +SubClassOf( ) + +# Class: (elemental bromine) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:36894") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "elemental bromine") +SubClassOf( ) + +# Class: (monoatomic fluorine) + +AnnotationAssertion( "0") +AnnotationAssertion( "F") +AnnotationAssertion( "18.998") +AnnotationAssertion( "18.99840") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "atomic fluorine") +AnnotationAssertion( "CHEBI:36895") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monoatomic fluorine") +SubClassOf( ) + +# Class: (monoatomic bromine) + +AnnotationAssertion( "0") +AnnotationAssertion( "Br") +AnnotationAssertion( "79.904") +AnnotationAssertion( "78.91834") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "atomic bromine") +AnnotationAssertion( "CHEBI:36896") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monoatomic bromine") +SubClassOf( ) + +# Class: (chalcogen hydride) + +AnnotationAssertion(Annotation( "ChEBI") "chalcogen hydride") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "chalcogen hydrides") +AnnotationAssertion( "CHEBI:36902") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chalcogen hydride") +SubClassOf( ) +SubClassOf( ) + +# Class: (xenon molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "xenon molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "xenon compounds") +AnnotationAssertion(Annotation( "ChEBI") "xenon molecular entities") +AnnotationAssertion( "CHEBI:36910") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "xenon molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (inorganic ion) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "inorganic ions") +AnnotationAssertion( "CHEBI:36914") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "inorganic ion") +SubClassOf( ) +SubClassOf( ) + +# Class: (inorganic cation) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "inorganic cations") +AnnotationAssertion( "CHEBI:36915") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "inorganic cation") +SubClassOf( ) +SubClassOf( ) + +# Class: (cation) + +AnnotationAssertion( "A monoatomic or polyatomic species having one or more elementary charges of the proton.") +AnnotationAssertion( "CHEBI:23058") +AnnotationAssertion( "CHEBI:3473") +AnnotationAssertion( "KEGG:C01373") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Cation") +AnnotationAssertion(Annotation( "ChEBI") "cation") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "cation") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Kation") +AnnotationAssertion(Annotation( "ChEBI") "Kationen") +AnnotationAssertion(Annotation( "ChEBI") "cationes") +AnnotationAssertion(Annotation( "ChEBI") "cations") +AnnotationAssertion( "CHEBI:36916") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cation") +SubClassOf( ) + +# Class: (antimony molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "antimony molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "antimony compounds") +AnnotationAssertion(Annotation( "ChEBI") "antimony molecular entities") +AnnotationAssertion( "CHEBI:36919") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "antimony molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (organochalcogen compound) + +AnnotationAssertion( "An organochalcogen compound is a compound containing at least one carbon-chalcogen bond.") +AnnotationAssertion(Annotation( "ChEBI") "organochalcogen compound") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organochalcogen compounds") +AnnotationAssertion( "CHEBI:36962") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organochalcogen compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (organooxygen compound) + +AnnotationAssertion( "An organochalcogen compound containing at least one carbon-oxygen bond.") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17586126") +AnnotationAssertion(Annotation( "ChEBI") "organooxygen compound") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organooxygen compounds") +AnnotationAssertion( "CHEBI:36963") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organooxygen compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (amino-acid anion) + +AnnotationAssertion(Annotation( "ChEBI") "amino-acid anion") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "amino acid anions") +AnnotationAssertion(Annotation( "ChEBI") "amino-acid anions") +AnnotationAssertion( "CHEBI:37022") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "amino-acid anion") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (organofluorine compound) + +AnnotationAssertion( "An organofluorine compound is a compound containing at least one carbon-fluorine bond.") +AnnotationAssertion( "0") +AnnotationAssertion( "FR") +AnnotationAssertion( "18.998") +AnnotationAssertion( "18.99840") +AnnotationAssertion( "*F") +AnnotationAssertion( "MetaCyc:Fluorides") +AnnotationAssertion(Annotation( "ChEBI") "organofluorine compound") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "fluoroorganic compound") +AnnotationAssertion(Annotation( "ChEBI") "fluoroorganic compounds") +AnnotationAssertion(Annotation( "ChEBI") "fluoroorganics") +AnnotationAssertion(Annotation( "ChEBI") "fluororganische Verbindungen") +AnnotationAssertion(Annotation( "ChEBI") "organofluorine compounds") +AnnotationAssertion( "CHEBI:37143") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organofluorine compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (organic hydride) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic hydrides") +AnnotationAssertion( "CHEBI:37175") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic hydride") +SubClassOf( ) + +# Class: (mononuclear parent hydride) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "mononuclear parent hydrides") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "mononuclear hydride") +AnnotationAssertion(Annotation( "IUPAC") "mononuclear hydrides") +AnnotationAssertion( "CHEBI:37176") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mononuclear parent hydride") +SubClassOf( ) + +# Class: (yttrium molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "yttrium molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "yttrium compounds") +AnnotationAssertion(Annotation( "ChEBI") "yttrium molecular entities") +AnnotationAssertion( "CHEBI:37203") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "yttrium molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (titanium molecular entity) + +AnnotationAssertion(Annotation( "ChEBI") "titanium molecular entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "titanium compounds") +AnnotationAssertion(Annotation( "ChEBI") "titanium molecular entities") +AnnotationAssertion( "CHEBI:37217") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "titanium molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (elemental sodium) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:37246") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "elemental sodium") +SubClassOf( ) + +# Class: (elemental potassium) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:37247") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "elemental potassium") +SubClassOf( ) + +# Class: (diagnostic imaging agent) + +AnnotationAssertion( "A substance administered to enhance contrast in images of the inside of the body obtained using X-rays, gamma-rays, sound waves, radio waves (MRI), or radioactive particles in order to diagnose disease.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:37334") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "diagnostic imaging agent") +SubClassOf( ) + +# Class: (ultrasound contrast agent) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:37337") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ultrasound contrast agent") +SubClassOf( ) + +# Class: (cyclic ether) + +AnnotationAssertion( "Any ether in which the oxygen atom forms part of a ring.") +AnnotationAssertion( "CHEBI:37406") +AnnotationAssertion(Annotation( "IUPAC") "cyclic ether") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "cyclic ethers") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "epoxy compounds") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "cyclic ethers") +AnnotationAssertion(Annotation( "ChEBI") "epoxy compounds") +AnnotationAssertion( "CHEBI:37407") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cyclic ether") +SubClassOf( ) +SubClassOf( ) + +# Class: (acid) + +AnnotationAssertion( "An acid is a molecular entity capable of donating a hydron (Bronsted acid) or capable of forming a covalent bond with an electron pair (Lewis acid).") +AnnotationAssertion( "CHEBI:13800") +AnnotationAssertion( "CHEBI:13801") +AnnotationAssertion( "CHEBI:22209") +AnnotationAssertion( "CHEBI:2426") +AnnotationAssertion( "KEGG:C00174") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Acid") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "acid") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Saeure") +AnnotationAssertion(Annotation( "ChEBI") "Saeuren") +AnnotationAssertion(Annotation( "IUPAC") "acide") +AnnotationAssertion(Annotation( "ChEBI") "acido") +AnnotationAssertion(Annotation( "ChEBI") "acids") +AnnotationAssertion( "CHEBI:37527") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "acid") +SubClassOf( ) + +# Class: (trialkyl phosphate) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "trialkyl phosphates") +AnnotationAssertion( "CHEBI:37562") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "trialkyl phosphate") +SubClassOf( ) + +# Class: (heteroatomic molecular entity) + +AnnotationAssertion( "A molecular entity consisting of two or more chemical elements.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "chemical compound") +AnnotationAssertion(Annotation( "ChEBI") "heteroatomic molecular entities") +AnnotationAssertion( "CHEBI:37577") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "heteroatomic molecular entity") +SubClassOf( ) + +# Class: (halide) + +AnnotationAssertion( "Any heteroatomic molecular entity that is a chemical compound of halogen with other chemical elements.") +AnnotationAssertion( "Wikipedia:Halide") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "halides") +AnnotationAssertion( "CHEBI:37578") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "halide") +SubClassOf( ) +SubClassOf( ) + +# Class: (carboxamide) + +AnnotationAssertion( "An amide of a carboxylic acid, having the structure RC(=O)NR2. The term is used as a suffix in systematic name formation to denote the -C(=O)NH2 group including its carbon atom.") +AnnotationAssertion( "0") +AnnotationAssertion( "CNOR3") +AnnotationAssertion( "42.01680") +AnnotationAssertion( "41.99799") +AnnotationAssertion( "[*]C(=O)N([*])[*]") +AnnotationAssertion( "CHEBI:35354") +AnnotationAssertion( "CHEBI:35355") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "carboxamides") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "carboxamides") +AnnotationAssertion(Annotation( "ChEBI") "primary carboxamide") +AnnotationAssertion( "CHEBI:37622") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "carboxamide") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (phosphoric ester) + +AnnotationAssertion( "CHEBI:26019") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:37734") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "phosphoric ester") +SubClassOf( ) +SubClassOf( ) + +# Class: (carboacyl group) + +AnnotationAssertion( "A carboacyl group is a group formed by loss of at least one OH from the carboxy group of a carboxylic acid.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "carboacyl groups") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "carboxylic acyl group") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "carboxylic acyl groups") +AnnotationAssertion( "CHEBI:37838") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "carboacyl group") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (dye) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Farbstoff") +AnnotationAssertion(Annotation( "ChEBI") "Farbstoffe") +AnnotationAssertion(Annotation( "ChEBI") "colorante") +AnnotationAssertion(Annotation( "ChEBI") "colorantes") +AnnotationAssertion(Annotation( "ChEBI") "dyes") +AnnotationAssertion(Annotation( "ChEBI") "teinture") +AnnotationAssertion(Annotation( "ChEBI") "teintures") +AnnotationAssertion( "CHEBI:37958") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "dye") +SubClassOf( ) + +# Class: (organonitrogen heterocyclic compound) + +AnnotationAssertion( "Any organonitrogen compound containing a cyclic component with nitrogen and at least one other element as ring member atoms.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "heterocyclic organonitrogen compounds") +AnnotationAssertion(Annotation( "ChEBI") "organonitrogen heterocyclic compounds") +AnnotationAssertion( "CHEBI:38101") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organonitrogen heterocyclic compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (oxacycle) + +AnnotationAssertion( "Any organic heterocyclic compound containing at least one ring oxygen atom.") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17134300") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "heterocyclic organooxygen compounds") +AnnotationAssertion(Annotation( "ChEBI") "organooxygen heterocyclic compounds") +AnnotationAssertion(Annotation( "ChEBI") "oxacycles") +AnnotationAssertion( "CHEBI:38104") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oxacycle") +SubClassOf( ) +SubClassOf( ) + +# Class: (monocyclic heteroarene) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "monocyclic heteroarenes") +AnnotationAssertion( "CHEBI:38179") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monocyclic heteroarene") +SubClassOf( ) + +# Class: (hydrocarbyl anion) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:38222") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydrocarbyl anion") +SubClassOf( ) + +# Class: (acetonitrile) + +AnnotationAssertion( "A nitrile that is hydrogen cyanide in which the hydrogen has been replaced by a methyl group.") +AnnotationAssertion( "0") +AnnotationAssertion( "C2H3N") +AnnotationAssertion( "InChI=1S/C2H3N/c1-2-3/h1H3") +AnnotationAssertion( "WEVYAHXRMPXWCK-UHFFFAOYSA-N") +AnnotationAssertion( "41.05196") +AnnotationAssertion( "41.02655") +AnnotationAssertion( "CC#N") +AnnotationAssertion( "CHEBI:22185") +AnnotationAssertion( "CHEBI:30972") +AnnotationAssertion( "CHEBI:41432") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:741857") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:75-05-8") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:75-05-8") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:895") +AnnotationAssertion( "PDBeChem:CCN") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17347819") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:19100763") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:20370615") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:985423") +AnnotationAssertion( "PPDB:1349") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:741857") +AnnotationAssertion( "Wikipedia:Acetonitrile") +AnnotationAssertion(Annotation( "PDBeChem") "ACETONITRILE") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "acetonitrile") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "CH3-C#N") +AnnotationAssertion(Annotation( "IUPAC") "MeCN") +AnnotationAssertion(Annotation( "ChEBI") "NCMe") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "cyanomethane") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "ethanenitrile") +AnnotationAssertion(Annotation( "IUPAC") "methyl cyanide") +AnnotationAssertion( "CHEBI:38472") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "acetonitrile") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (electron-transport chain inhibitor) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:38496") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "electron-transport chain inhibitor") +SubClassOf( ) + +# Class: (respiratory-chain inhibitor) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:38497") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "respiratory-chain inhibitor") +SubClassOf( ) + +# Class: (EC 1.9.3.1 (cytochrome c oxidase) inhibitor) + +AnnotationAssertion( "An EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitor that interferes with the action of cytochrome c oxidase (EC 1.9.3.1).") +AnnotationAssertion( "CHEBI:38501") +AnnotationAssertion( "CHEBI:62966") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:12969439") +AnnotationAssertion( "Wikipedia:Cytochrome_c_oxidase") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "CcO inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "EC 1.9.3.1 (cytochrome c oxidase) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "EC 1.9.3.1 inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "EC 1.9.3.1 inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "NADH cytochrome c oxidase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "NADH cytochrome c oxidase inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "Warburg's respiratory enzyme inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "Warburg's respiratory enzyme inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "complex IV (mitochondrial electron transport) inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "complex IV (mitochondrial electron transport) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "cytochrome a3 inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "cytochrome a3 inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "cytochrome aa3 inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "cytochrome aa3 inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "cytochrome c oxidase (EC 1.9.3.1) inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "cytochrome c oxidase (EC 1.9.3.1) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "cytochrome c oxidase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "cytochrome c oxidase inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "cytochrome oxidase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "cytochrome oxidase inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "cytochrome-c oxidase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "cytochrome-c oxidase inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "ferrocytochrome c oxidase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "ferrocytochrome c oxidase inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "ferrocytochrome-c:oxygen oxidoreductase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "ferrocytochrome-c:oxygen oxidoreductase inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "indophenol oxidase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "indophenol oxidase inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "indophenolase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "indophenolase inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "mitochondrial complex IV inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "mitochondrial complex IV inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "mitochondrial cytochrome-c oxidase inhibitors") +AnnotationAssertion( "CHEBI:38500") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "EC 1.9.3.1 (cytochrome c oxidase) inhibitor") +SubClassOf( ) +SubClassOf( ) + +# Class: (difluorobenzene) + +AnnotationAssertion( "Any member of the class of fluorobenzenes containing a mono- or poly-substituted benzene ring carrying two fluorine atoms.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "difluorobenzene") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Difluorbenzol") +AnnotationAssertion(Annotation( "ChEBI") "difluorobenzenes") +AnnotationAssertion( "CHEBI:38582") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "difluorobenzene") +SubClassOf( ) + +# Class: (1,4-difluorobenzene) + +AnnotationAssertion( "0") +AnnotationAssertion( "C6H4F2") +AnnotationAssertion( "InChI=1S/C6H4F2/c7-5-1-2-6(8)4-3-5/h1-4H") +AnnotationAssertion( "QUGUFLJIAFISSW-UHFFFAOYSA-N") +AnnotationAssertion( "114.09277") +AnnotationAssertion( "114.02811") +AnnotationAssertion( "Fc1ccc(F)cc1") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1904541") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:540-36-3") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:540-36-3") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:142070") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "1,4-difluorobenzene") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "1,4-Difluorbenzol") +AnnotationAssertion(Annotation( "ChemIDplus") "p-difluorobenzene") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "para-difluorobenzene") +AnnotationAssertion( "CHEBI:38585") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "1,4-difluorobenzene") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (hexafluorobenzene) + +AnnotationAssertion( "A member of the class of fluorobenzenes that is benzene in which all six hydrogen atom have been replaced by fluorine.") +AnnotationAssertion( "0") +AnnotationAssertion( "C6F6") +AnnotationAssertion( "InChI=1S/C6F6/c7-1-2(8)4(10)6(12)5(11)3(1)9") +AnnotationAssertion( "ZQBFAOFFOQMSGJ-UHFFFAOYSA-N") +AnnotationAssertion( "186.05462") +AnnotationAssertion( "185.99042") +AnnotationAssertion( "Fc1c(F)c(F)c(F)c(F)c1F") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1683438") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:392-56-3") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:392-56-3") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:101976") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hexafluorobenzene") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "1,2,3,4,5,6-hexafluorobenzene") +AnnotationAssertion(Annotation( "ChEBI") "Hexafluorbenzol") +AnnotationAssertion(Annotation( "ChemIDplus") "perfluorobenzene") +AnnotationAssertion( "CHEBI:38589") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hexafluorobenzene") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (organic sodium salt) + +AnnotationAssertion(Annotation( "ChEBI") "organic sodium salt") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic sodium salts") +AnnotationAssertion( "CHEBI:38700") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic sodium salt") +SubClassOf( ) +SubClassOf( ) + +# Class: (inorganic sodium salt) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "inorganic sodium salts") +AnnotationAssertion( "CHEBI:38702") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "inorganic sodium salt") +SubClassOf( ) +SubClassOf( ) + +# Class: (morpholines) + +AnnotationAssertion( "Any compound containing morpholine as part of its structure.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:38785") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "morpholines") +SubClassOf( ) + +# Class: (fluorocarbon) + +AnnotationAssertion( "Compounds consisting wholly of fluorine and carbon.") +AnnotationAssertion(Annotation( "ChEBI") "fluorocarbon") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "fluorocarbons") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "fluorocarbons") +AnnotationAssertion( "CHEBI:38824") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluorocarbon") +SubClassOf( ) + +# Class: (tetrafluoromethane) + +AnnotationAssertion( "0") +AnnotationAssertion( "CF4") +AnnotationAssertion( "InChI=1S/CF4/c2-1(3,4)5") +AnnotationAssertion( "TXEYQDLBPFQVAA-UHFFFAOYSA-N") +AnnotationAssertion( "88.00431") +AnnotationAssertion( "87.99361") +AnnotationAssertion( "FC(F)(F)F") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1697288") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:75-73-0") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:75-73-0") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:2016") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "tetrafluoromethane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "CF4") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "Freon 14") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "Halon 14") +AnnotationAssertion(Annotation( "ChEBI") "Tetrafluorkohlenstoff") +AnnotationAssertion(Annotation( "ChEBI") "Tetrafluormethan") +AnnotationAssertion(Annotation( "ChemIDplus") "carbon tetrafluoride") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "perfluoromethane") +AnnotationAssertion(Annotation( "IUPAC") "tetrafluoridocarbon") +AnnotationAssertion(Annotation( "ChemIDplus") "tetrafluorocarbon") +AnnotationAssertion( "CHEBI:38825") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tetrafluoromethane") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (boron halide) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:38900") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "boron halide") +SubClassOf( ) + +# Class: (boron fluoride) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:38901") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "boron fluoride") +SubClassOf( ) + +# Class: (methylbenzene) + +AnnotationAssertion( "Any alkylbenzene that is benzene substituted with one or more methyl groups.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "methylbenzenes") +AnnotationAssertion( "CHEBI:38975") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "methylbenzene") +SubClassOf( ) + +# Class: (alkylbenzene) + +AnnotationAssertion( "A monocyclic arene that is benzene substituted with one or more alkyl groups.") +AnnotationAssertion(Annotation( "ChEBI") "alkylbenzene") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Alkylbenzol") +AnnotationAssertion(Annotation( "ChEBI") "alkylbenzenes") +AnnotationAssertion( "CHEBI:38976") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "alkylbenzene") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (Bronsted acid) + +AnnotationAssertion( "A molecular entity capable of donating a hydron to an acceptor (Bronsted base).") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "Bronsted acid") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Bronsted-Saeure") +AnnotationAssertion(Annotation( "IUPAC") "acide de Bronsted") +AnnotationAssertion(Annotation( "IUPAC") "donneur d'hydron") +AnnotationAssertion(Annotation( "IUPAC") "hydron donor") +AnnotationAssertion( "CHEBI:39141") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "Bronsted acid") +SubClassOf( ) +SubClassOf( ) + +# Class: (Bronsted base) + +AnnotationAssertion( "A molecular entity capable of accepting a hydron from a donor (Bronsted acid).") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "Bronsted base") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Bronsted-Base") +AnnotationAssertion(Annotation( "IUPAC") "accepteur d'hydron") +AnnotationAssertion(Annotation( "IUPAC") "base de Bronsted") +AnnotationAssertion(Annotation( "IUPAC") "hydron acceptor") +AnnotationAssertion( "CHEBI:39142") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "Bronsted base") +SubClassOf( ) +SubClassOf( ) + +# Class: (Lewis acid) + +AnnotationAssertion( "A molecular entity that is an electron-pair acceptor and therefore able to form a covalent bond with an electron-pair donor (Lewis base), thereby producing a Lewis adduct.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "Lewis acid") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Lewis-Saeure") +AnnotationAssertion(Annotation( "IUPAC") "accepteur d'une paire d'electrons") +AnnotationAssertion(Annotation( "IUPAC") "acide de Lewis") +AnnotationAssertion(Annotation( "ChEBI") "electron acceptor") +AnnotationAssertion(Annotation( "IUPAC") "electron-pair acceptor") +AnnotationAssertion( "CHEBI:39143") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "Lewis acid") +SubClassOf( ) +SubClassOf( ) + +# Class: (Lewis base) + +AnnotationAssertion( "A molecular entity able to provide a pair of electrons and thus capable of forming a covalent bond with an electron-pair acceptor (Lewis acid), thereby producing a Lewis adduct.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "Lewis base") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Lewis-Base") +AnnotationAssertion(Annotation( "IUPAC") "base de Lewis") +AnnotationAssertion(Annotation( "ChEBI") "donneur d'une paire d'electrons") +AnnotationAssertion(Annotation( "ChEBI") "electron donor") +AnnotationAssertion( "CHEBI:39144") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "Lewis base") +SubClassOf( ) +SubClassOf( ) + +# Class: (halomethane) + +AnnotationAssertion( "A haloalkane that is methane in which one (or more) of the hydrogens have been replaced by a halogen atom/halogen atoms.") +AnnotationAssertion(Annotation( "ChEBI") "halomethane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "halomethanes") +AnnotationAssertion( "CHEBI:39279") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "halomethane") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (fluoromethanes) + +AnnotationAssertion( "A halomethane that is methane in which one or more hydrogens has been replaced by fluorine.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:39281") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluoromethanes") +SubClassOf( ) +SubClassOf( ) + +# Class: (hexafluoroacetone) + +AnnotationAssertion( "A ketone that is acetone in which all the methyl hydrogens are replaced by fluoro groups.") +AnnotationAssertion( "0") +AnnotationAssertion( "C3F6O") +AnnotationAssertion( "InChI=1S/C3F6O/c4-2(5,6)1(10)3(7,8)9") +AnnotationAssertion( "VBZWSGALLODQNC-UHFFFAOYSA-N") +AnnotationAssertion( "166.02192") +AnnotationAssertion( "165.98533") +AnnotationAssertion( "FC(F)(F)C(=O)C(F)(F)F") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:607236") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:684-16-2") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:684-16-2") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:27263") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22481381") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24186328") +AnnotationAssertion( "Patent:CN102964231") +AnnotationAssertion( "Patent:CN102976908") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:607236") +AnnotationAssertion( "Wikipedia:Hexafluoroacetone") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "1,1,1,3,3,3-hexafluoroacetone") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "(CF3)2CO") +AnnotationAssertion(Annotation( "ChemIDplus") "1,1,1,3,3,3-hexafluoro-2-propanone") +AnnotationAssertion(Annotation( "ChemIDplus") "6FK") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "hexafluoropropanone") +AnnotationAssertion(Annotation( "ChemIDplus") "perfluoro-2-propanone") +AnnotationAssertion(Annotation( "ChemIDplus") "perfluoroacetone") +AnnotationAssertion( "CHEBI:39429") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hexafluoroacetone") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (dihydrogenphosphate) + +AnnotationAssertion( "A monovalent inorganic anion that consists of phosphoric acid in which one of the three OH groups has been deprotonated.") +AnnotationAssertion( "-1") +AnnotationAssertion( "H2O4P") +AnnotationAssertion( "InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-1") +AnnotationAssertion( "NBIIXXVUZAFLBC-UHFFFAOYSA-M") +AnnotationAssertion( "96.98724") +AnnotationAssertion( "96.96962") +AnnotationAssertion( "[H]OP([O-])(=O)O[H]") +AnnotationAssertion( "CHEBI:29137") +AnnotationAssertion( "CHEBI:39739") +AnnotationAssertion( "DrugBank:DB02831") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1999") +AnnotationAssertion( "PDBeChem:2HP") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "dihydrogen(tetraoxidophosphate)(1-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "dihydrogenphosphate") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "dihydrogentetraoxophosphate(1-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "dihydrogentetraoxophosphate(V)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "dihydroxidodioxidophosphate(1-)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "PDBeChem") "DIHYDROGENPHOSPHATE ION") +AnnotationAssertion(Annotation( "IUPAC") "H2PO4(-)") +AnnotationAssertion(Annotation( "IUPAC") "[PO2(OH)2](-)") +AnnotationAssertion( "CHEBI:39745") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "dihydrogenphosphate") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (fluoroform) + +AnnotationAssertion( "0") +AnnotationAssertion( "CHF3") +AnnotationAssertion( "InChI=1S/CHF3/c2-1(3)4/h1H") +AnnotationAssertion( "XPDWGBQVDMORPB-UHFFFAOYSA-N") +AnnotationAssertion( "70.01385") +AnnotationAssertion( "70.00303") +AnnotationAssertion( "[H]C(F)(F)F") +AnnotationAssertion( "CHEBI:24073") +AnnotationAssertion( "CHEBI:41543") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1731035") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:75-46-7") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:75-46-7") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1543") +AnnotationAssertion( "PDBeChem:CFT") +AnnotationAssertion(Annotation( "UM-BBD") "UM-BBD_compID:c0802") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "fluoroform") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "CHF3") +AnnotationAssertion(Annotation( "ChemIDplus") "Freon 23") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "Freon F-23") +AnnotationAssertion(Annotation( "PDBeChem") "TRIFLUOROMETHANE") +AnnotationAssertion(Annotation( "UM-BBD") "carbon trifluoride") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "methyl trifluoride") +AnnotationAssertion( "CHEBI:41550") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluoroform") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (dideuterium oxide) + +AnnotationAssertion( "0") +AnnotationAssertion( "D2O") +AnnotationAssertion( "InChI=1S/H2O/h1H2/i/hD2") +AnnotationAssertion( "XLYOFNOQVPJJNP-ZSJDYOACSA-N") +AnnotationAssertion( "20.027") +AnnotationAssertion( "20.02312") +AnnotationAssertion( "[2H]O[2H]") +AnnotationAssertion( "CHEBI:29373") +AnnotationAssertion( "CHEBI:41979") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7789-20-0") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7789-20-0") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:97") +AnnotationAssertion( "MolBase:1647") +AnnotationAssertion( "PDBeChem:DOD") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "dideuterium oxide") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "((2)H2)water") +AnnotationAssertion(Annotation( "IUPAC") "D2O") +AnnotationAssertion(Annotation( "PDBeChem") "DEUTERATED WATER") +AnnotationAssertion(Annotation( "ChEBI") "Deuteriumoxid") +AnnotationAssertion(Annotation( "MolBase") "[OD2]") +AnnotationAssertion(Annotation( "ChemIDplus") "deuterium oxide") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "heavy water") +AnnotationAssertion(Annotation( "ChEBI") "schweres Wasser") +AnnotationAssertion( "CHEBI:41981") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "dideuterium oxide") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (ethane) + +AnnotationAssertion( "An alkane comprising of two carbon atoms.") +AnnotationAssertion( "0") +AnnotationAssertion( "C2H6") +AnnotationAssertion( "InChI=1S/C2H6/c1-2/h1-2H3") +AnnotationAssertion( "OTMSDBZUPAUEDD-UHFFFAOYSA-N") +AnnotationAssertion( "30.06904") +AnnotationAssertion( "30.04695") +AnnotationAssertion( "CC") +AnnotationAssertion( "CHEBI:23975") +AnnotationAssertion( "CHEBI:42260") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1730716") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:74-84-0") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:74-84-0") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:212") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:12826252") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:14664856") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16236899") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1730716") +AnnotationAssertion( "Wikipedia:Ethane") +AnnotationAssertion(Annotation( "PDBeChem") "ETHANE") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "ethane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Aethan") +AnnotationAssertion(Annotation( "ChEBI") "C2H6") +AnnotationAssertion(Annotation( "IUPAC") "CH3-CH3") +AnnotationAssertion(Annotation( "ChEBI") "Ethan") +AnnotationAssertion(Annotation( "ChEBI") "R-170") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "bimethyl") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "dimethyl") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "ethyl hydride") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "methylmethane") +AnnotationAssertion( "CHEBI:42266") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ethane") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (hydroxy group) + +AnnotationAssertion( "0") +AnnotationAssertion( "HO") +AnnotationAssertion( "17.00734") +AnnotationAssertion( "17.00274") +AnnotationAssertion( "*O[H]") +AnnotationAssertion( "CHEBI:24706") +AnnotationAssertion( "CHEBI:43171") +AnnotationAssertion( "PDBeChem:OH") +AnnotationAssertion(Annotation( "PDBeChem") "HYDROXY GROUP") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydroxy") +AnnotationAssertion(Annotation( "UniProt") "hydroxy group") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "-OH") +AnnotationAssertion(Annotation( "ChEBI") "hydroxyl") +AnnotationAssertion(Annotation( "ChEBI") "hydroxyl group") +AnnotationAssertion( "CHEBI:43176") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydroxy group") +SubClassOf( ) + +# Class: (hydrogenphosphate) + +AnnotationAssertion( "A phosphate ion that is the conjugate base of dihydrogenphosphate.") +AnnotationAssertion( "-2") +AnnotationAssertion( "HO4P") +AnnotationAssertion( "InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-2") +AnnotationAssertion( "NBIIXXVUZAFLBC-UHFFFAOYSA-L") +AnnotationAssertion( "95.97930") +AnnotationAssertion( "95.96234") +AnnotationAssertion( "OP([O-])([O-])=O") +AnnotationAssertion( "CHEBI:29139") +AnnotationAssertion( "CHEBI:43470") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1998") +AnnotationAssertion( "MolBase:1628") +AnnotationAssertion( "PDBeChem:PI") +AnnotationAssertion( "PDBeChem:PO4") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydrogen(tetraoxidophosphate)(2-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydrogenphosphate") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydrogentetraoxophosphate(2-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydrogentetraoxophosphate(V)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydroxidotrioxidophosphate(2-)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "HPO4(2-)") +AnnotationAssertion(Annotation( "PDBeChem") "HYDROGENPHOSPHATE ION") +AnnotationAssertion(Annotation( "PDBeChem") "INORGANIC PHOSPHATE GROUP") +AnnotationAssertion(Annotation( "MolBase") "[P(OH)O3](2-)") +AnnotationAssertion(Annotation( "IUPAC") "[PO3(OH)](2-)") +AnnotationAssertion(Annotation( "ChEBI") "hydrogen phosphate") +AnnotationAssertion(Annotation( "UniProt") "phosphate") +AnnotationAssertion( "CHEBI:43474") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydrogenphosphate") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (trifluoroacetic acid) + +AnnotationAssertion( "A monocarboxylic acid that is the trifluoro derivative of acetic acid.") +AnnotationAssertion( "0") +AnnotationAssertion( "C2HF3O2") +AnnotationAssertion( "InChI=1S/C2HF3O2/c3-2(4,5)1(6)7/h(H,6,7)") +AnnotationAssertion( "DTQVDTLACAAQTR-UHFFFAOYSA-N") +AnnotationAssertion( "114.02335") +AnnotationAssertion( "113.99286") +AnnotationAssertion( "OC(=O)C(F)(F)F") +AnnotationAssertion( "CHEBI:27111") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:742035") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:76-05-1") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:76-05-1") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:2729") +AnnotationAssertion( "HMDB:HMDB0014118") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:11498800") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:7696372") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:742035") +AnnotationAssertion( "Wikipedia:Trifluoroacetic_acid") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "trifluoroacetic acid") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "CF3COOH") +AnnotationAssertion(Annotation( "ChEBI") "TFA") +AnnotationAssertion(Annotation( "ChEBI") "Trifluoressigsaeure") +AnnotationAssertion(Annotation( "ChEBI") "acide trifluoroacetique") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "perfluoroacetic acid") +AnnotationAssertion( "CHEBI:45892") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "trifluoroacetic acid") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (tetramethylammonium) + +AnnotationAssertion( "The simplest quaternary ammonium cation, comprising a central nitrogen linked to four methyl groups.") +AnnotationAssertion( "+1") +AnnotationAssertion( "C4H12N") +AnnotationAssertion( "InChI=1S/C4H12N/c1-5(2,3)4/h1-4H3/q+1") +AnnotationAssertion( "QEMXHQIAXOOASZ-UHFFFAOYSA-N") +AnnotationAssertion( "74.14482") +AnnotationAssertion( "74.09643") +AnnotationAssertion( "C[N+](C)(C)C") +AnnotationAssertion( "CHEBI:35264") +AnnotationAssertion( "CHEBI:46018") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1733140") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:51-92-3") +AnnotationAssertion( "DrugBank:DB03095") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1858") +AnnotationAssertion( "PDBeChem:TMA") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:10421447") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:10788331") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1733140") +AnnotationAssertion( "Wikipedia:Tetramethylammonium") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "N,N,N-trimethylmethanaminium") +AnnotationAssertion(Annotation( "IUPAC") "tetramethylammonium") +AnnotationAssertion(Annotation( "UniProt") "tetramethylammonium") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "(CH3)4N(+)") +AnnotationAssertion(Annotation( "PDBeChem") "TETRAMETHYLAMMONIUM ION") +AnnotationAssertion(Annotation( "ChEBI") "[NMe4](+)") +AnnotationAssertion(Annotation( "IUPAC") "tetramethylazanium") +AnnotationAssertion(Annotation( "ChemIDplus") "trimethylaminomethane") +AnnotationAssertion( "CHEBI:46020") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tetramethylammonium") +SubClassOf( ) + +# Class: (dimethylselenide) + +AnnotationAssertion( "An organoselenium compound of two methyl groups covalently bound to a selenium.") +AnnotationAssertion( "0") +AnnotationAssertion( "C2H6Se") +AnnotationAssertion( "InChI=1S/C2H6Se/c1-3-2/h1-2H3") +AnnotationAssertion( "RVIXKDRPFPUUOO-UHFFFAOYSA-N") +AnnotationAssertion( "109.03000") +AnnotationAssertion( "109.96347") +AnnotationAssertion( "C[Se]C") +AnnotationAssertion(Annotation( "ChemIDplus") "Beilstein:1696848") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:593-79-3") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:593-79-3") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:593-79-3") +AnnotationAssertion( "HMDB:HMDB0033212") +AnnotationAssertion( "KEGG:C02535") +AnnotationAssertion( "MetaCyc:CPD-12005") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:15150252") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:15233545") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:1652783") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:20152423") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:21069149") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:23454698") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:23590617") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24241025") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:4851946") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:5079352") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:8179331") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1696848") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "(methylselanyl)methane") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "dimethyl selenide") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "(CH3)2Se") +AnnotationAssertion(Annotation( "ChemIDplus") "Dimethylselenium") +AnnotationAssertion(Annotation( "ChemIDplus") "Methyl selenide") +AnnotationAssertion(Annotation( "ChemIDplus") "Methyl selenium") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "Selenium dimethyl") +AnnotationAssertion(Annotation( "HMDB") "Selenobismethane") +AnnotationAssertion( "CHEBI:4610") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "dimethylselenide") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (dimethyl telluride) + +AnnotationAssertion( "An organotellurium compound in which the tellurium atom is covalently bonded to two methyl groups. A xenobiotic metabolite produced by certain strains of bacteria exposed to tellurium containing compounds.") +AnnotationAssertion( "0") +AnnotationAssertion( "C2H6Te") +AnnotationAssertion( "InChI=1S/C2H6Te/c1-3-2/h1-2H3") +AnnotationAssertion( "YMUZFVVKDBZHGP-UHFFFAOYSA-N") +AnnotationAssertion( "157.66904") +AnnotationAssertion( "159.95317") +AnnotationAssertion( "C[Te]C") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1696849") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:593-80-6") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:593-80-6") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:593-80-6") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1480") +AnnotationAssertion( "KEGG:C02677") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:5079352") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:9096851") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1696849") +AnnotationAssertion( "Wikipedia:Dimethyl_telluride") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Dimethyl telluride") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "dimethyl telluride") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "dimethyltellane") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "dimethyltellurium") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "Dimethyltelluride") +AnnotationAssertion(Annotation( "IUPAC") "TeMe2") +AnnotationAssertion( "CHEBI:4613") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "dimethyl telluride") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (trimethyl phosphate) + +AnnotationAssertion( "A trialkyl phosphate that is the trimethyl ester of phosphoric acid.") +AnnotationAssertion( "0") +AnnotationAssertion( "C3H9O4P") +AnnotationAssertion( "InChI=1S/C3H9O4P/c1-5-8(4,6-2)7-3/h1-3H3") +AnnotationAssertion( "WVLBCYQITXONBZ-UHFFFAOYSA-N") +AnnotationAssertion( "140.07492") +AnnotationAssertion( "140.02385") +AnnotationAssertion( "COP(=O)(OC)OC") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1071731") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:512-56-1") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:512-56-1") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:49926") +AnnotationAssertion( "PDBeChem:TZZ") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17083219") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:18409209") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1071731") +AnnotationAssertion( "Wikipedia:Trimethyl_phosphate") +AnnotationAssertion(Annotation( "PDBeChem") "TRIMETHYL PHOSPHATE") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "trimethyl phosphate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChemIDplus") "O,O,O-Trimethyl phosphate") +AnnotationAssertion(Annotation( "ChemIDplus") "Phosphoric acid, trimethyl ester") +AnnotationAssertion(Annotation( "ChemIDplus") "TMP") +AnnotationAssertion(Annotation( "ChemIDplus") "TMPA") +AnnotationAssertion(Annotation( "ChemIDplus") "TMPO") +AnnotationAssertion(Annotation( "ChemIDplus") "Trimethoxyphosphine oxide") +AnnotationAssertion(Annotation( "ChemIDplus") "Trimethyl orthophosphate") +AnnotationAssertion( "CHEBI:46324") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "trimethyl phosphate") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (tungstate) + +AnnotationAssertion( "A divalent inorganic anion obtained by removal of both protons from tungstic acid.") +AnnotationAssertion( "-2") +AnnotationAssertion( "O4W") +AnnotationAssertion( "InChI=1S/4O.W/q;;2*-1;") +AnnotationAssertion( "PBYZMCDFOULPGH-UHFFFAOYSA-N") +AnnotationAssertion( "247.83760") +AnnotationAssertion( "247.93169") +AnnotationAssertion( "[O-][W]([O-])(=O)=O") +AnnotationAssertion( "CHEBI:30518") +AnnotationAssertion( "CHEBI:46497") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:14311-52-5") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:2540") +AnnotationAssertion( "MolBase:529") +AnnotationAssertion( "PDBeChem:WO4") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "tetraoxidotungstate(2-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "tetraoxidotungstate(VI)") +AnnotationAssertion(Annotation( "UniProt") "tungstate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "PDBeChem") "TUNGSTATE(VI)ION") +AnnotationAssertion(Annotation( "ChEBI") "Wolframat") +AnnotationAssertion(Annotation( "MolBase") "[WO4](2-)") +AnnotationAssertion(Annotation( "ChEBI") "wolframate") +AnnotationAssertion( "CHEBI:46502") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tungstate") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (oxo group) + +AnnotationAssertion( "0") +AnnotationAssertion( "O") +AnnotationAssertion( "15.99940") +AnnotationAssertion( "15.99491") +AnnotationAssertion( "O=*") +AnnotationAssertion( "CHEBI:29353") +AnnotationAssertion( "CHEBI:44607") +AnnotationAssertion( "PDBeChem:O") +AnnotationAssertion(Annotation( "PDBeChem") "OXO GROUP") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "oxo") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "=O") +AnnotationAssertion( "CHEBI:46629") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oxo group") +SubClassOf( ) + +# Class: (mineral) + +AnnotationAssertion( "In general, a mineral is a chemical substance that is normally crystalline formed and has been formed as a result of geological processes. The term also includes metamict substances (naturally occurring, formerly crystalline substances whose crystallinity has been destroyed by ionising radiation) and can include naturally occurring amorphous substances that have never been crystalline ('mineraloids') such as georgite and calciouranoite as well as substances formed by the action of geological processes on bigenic compounds ('biogenic minerals').") +AnnotationAssertion( "Wikipedia:Mineral") +AnnotationAssertion(Annotation( "ChEBI") "mineral") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Minerale") +AnnotationAssertion(Annotation( "ChEBI") "minerales") +AnnotationAssertion(Annotation( "ChEBI") "minerals") +AnnotationAssertion(Annotation( "ChEBI") "mineraux") +AnnotationAssertion( "CHEBI:46662") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mineral") +SubClassOf( ) + +# Class: (fluorohydrocarbon) + +AnnotationAssertion( "A compound derived from a hydrocarbon by replacing one or more hydrogen atoms with fluorine atoms.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "FKW") +AnnotationAssertion(Annotation( "ChEBI") "Fluorkohlenwasserstoffe") +AnnotationAssertion(Annotation( "ChEBI") "HFC") +AnnotationAssertion(Annotation( "ChEBI") "fluorohydrocarbons") +AnnotationAssertion( "CHEBI:46695") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluorohydrocarbon") +SubClassOf( ) +SubClassOf( ) + +# Class: (solvent) + +AnnotationAssertion( "A liquid that can dissolve other substances (solutes) without any change in their chemical composition.") +AnnotationAssertion( "Wikipedia:Solvent") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Loesungsmittel") +AnnotationAssertion(Annotation( "ChEBI") "solvant") +AnnotationAssertion(Annotation( "ChEBI") "solvents") +AnnotationAssertion( "CHEBI:46787") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "solvent") +SubClassOf( ) +SubClassOf( ) + +# Class: (organoammonium salt) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organoammonium salts") +AnnotationAssertion( "CHEBI:46850") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organoammonium salt") +SubClassOf( ) + +# Class: (carboxy group) + +AnnotationAssertion( "0") +AnnotationAssertion( "CHO2") +AnnotationAssertion( "45.01744") +AnnotationAssertion( "44.99765") +AnnotationAssertion( "*C(=O)O") +AnnotationAssertion( "CHEBI:23025") +AnnotationAssertion( "CHEBI:41420") +AnnotationAssertion( "PDBeChem:FMT") +AnnotationAssertion(Annotation( "PDBeChem") "CARBOXY GROUP") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "carboxy") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "-C(O)OH") +AnnotationAssertion(Annotation( "ChEBI") "-CO2H") +AnnotationAssertion(Annotation( "IUPAC") "-COOH") +AnnotationAssertion(Annotation( "ChEBI") "carboxyl group") +AnnotationAssertion( "CHEBI:46883") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "carboxy group") +SubClassOf( ) + +# Class: (dioxane) + +AnnotationAssertion( "Any member of the class of dioxanes that is a cyclohexane in which two carbon atoms are replaced by oxygen atoms.") +AnnotationAssertion( "0") +AnnotationAssertion( "C4H8O2") +AnnotationAssertion( "88.105") +AnnotationAssertion( "88.05243") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "dioxane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:46923") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "dioxane") +SubClassOf( ) +SubClassOf( ) + +# Class: (dioxanes) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:46926") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "dioxanes") +SubClassOf( ) +SubClassOf( ) + +# Class: (oxazinane) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "oxazinanes") +AnnotationAssertion( "CHEBI:46952") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oxazinane") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + +# Class: (1,4-dioxane) + +AnnotationAssertion( "A dioxane with oxygen atoms at positions 1 and 4.") +AnnotationAssertion( "0") +AnnotationAssertion( "C4H8O2") +AnnotationAssertion( "InChI=1S/C4H8O2/c1-2-6-4-3-5-1/h1-4H2") +AnnotationAssertion( "RYHBNJHYFVUHQT-UHFFFAOYSA-N") +AnnotationAssertion( "88.10512") +AnnotationAssertion( "88.05243") +AnnotationAssertion( "C1COCCO1") +AnnotationAssertion( "CHEBI:34064") +AnnotationAssertion( "CHEBI:41951") +AnnotationAssertion( "CHEBI:46925") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:102551") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:123-91-1") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:123-91-1") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:123-91-1") +AnnotationAssertion( "DrugBank:DB03316") +AnnotationAssertion( "KEGG:C14440") +AnnotationAssertion( "LINCS:LSM-37087") +AnnotationAssertion( "PDBeChem:DIO") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:14550759") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:18044507") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:20598439") +AnnotationAssertion( "PPDB:1638") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:102551") +AnnotationAssertion( "Wikipedia:1,4-Dioxane") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "1,4-Dioxane") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "1,4-dioxane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "PDBeChem") "1,4-DIETHYLENE DIOXIDE") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "1,4-Dioxan") +AnnotationAssertion(Annotation( "ChemIDplus") "1,4-dioxacyclohexane") +AnnotationAssertion(Annotation( "ChemIDplus") "Dioxan-1,4") +AnnotationAssertion(Annotation( "ChemIDplus") "di(ethylene oxide)") +AnnotationAssertion(Annotation( "ChemIDplus") "dioxane-1,4") +AnnotationAssertion(Annotation( "ChemIDplus") "glycol ethylene ether") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "p-Dioxane") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "tetrahydro-1,4-dioxin") +AnnotationAssertion(Annotation( "ChemIDplus") "tetrahydro-p-dioxin") +AnnotationAssertion(Annotation( "ChemIDplus") "tetrahydro-para-dioxin") +AnnotationAssertion( "CHEBI:47032") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "1,4-dioxane") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (hydrogen bromide) + +AnnotationAssertion( "A diatomic molecule containing covalently bonded hydrogen and bromine atoms.") +AnnotationAssertion( "0") +AnnotationAssertion( "BrH") +AnnotationAssertion( "HBr") +AnnotationAssertion( "InChI=1S/BrH/h1H") +AnnotationAssertion( "CPELXLSAUQHCOX-UHFFFAOYSA-N") +AnnotationAssertion( "80.91194") +AnnotationAssertion( "79.92616") +AnnotationAssertion( "Br[H]") +AnnotationAssertion( "CHEBI:29134") +AnnotationAssertion( "CHEBI:31673") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:10035-10-6") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:10035-10-6") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:10035-10-6") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:620") +AnnotationAssertion( "KEGG:C13645") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "bromane") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "bromidohydrogen") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydrogen bromide") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "hydrogen bromide") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "Bromwasserstoff") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "HBr") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Hydrobromic acid") +AnnotationAssertion(Annotation( "ChEBI") "Hydrogenbromid") +AnnotationAssertion(Annotation( "IUPAC") "[HBr]") +AnnotationAssertion(Annotation( "ChEBI") "bromure d'hydrogene") +AnnotationAssertion( "CHEBI:47266") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydrogen bromide") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (ammonium salt) + +AnnotationAssertion(Annotation( "ChEBI") "ammonium salt") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Ammoniumsalz") +AnnotationAssertion(Annotation( "ChEBI") "Ammoniumsalze") +AnnotationAssertion(Annotation( "ChEBI") "ammonium salts") +AnnotationAssertion( "CHEBI:47704") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ammonium salt") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (alkanesulfonic acid) + +AnnotationAssertion( "Organic derivatives of sulfonic acid in which the sulfo group is linked directly to carbon of an alkyl group.") +AnnotationAssertion( "CHEBI:13809") +AnnotationAssertion( "CHEBI:33553") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "alkanesulfonic acids") +AnnotationAssertion(Annotation( "ChEBI") "alkylsulfonic acids") +AnnotationAssertion( "CHEBI:47901") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "alkanesulfonic acid") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (nitric acid) + +AnnotationAssertion( "A nitrogen oxoacid of formula HNO3 in which the nitrogen atom is bonded to a hydroxy group and by equivalent bonds to the remaining two oxygen atoms.") +AnnotationAssertion( "0") +AnnotationAssertion( "HNO3") +AnnotationAssertion( "InChI=1S/HNO3/c2-1(3)4/h(H,2,3,4)") +AnnotationAssertion( "GRYLNZFGIOXLOG-UHFFFAOYSA-N") +AnnotationAssertion( "63.01280") +AnnotationAssertion( "62.99564") +AnnotationAssertion( "O[N+]([O-])=O") +AnnotationAssertion( "CHEBI:25545") +AnnotationAssertion( "CHEBI:7580") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7697-37-2") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7697-37-2") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1576") +AnnotationAssertion( "KEGG:C00244") +AnnotationAssertion( "KEGG:D02313") +AnnotationAssertion( "MetaCyc:CPD-15028") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22285512") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:23402861") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:3587310") +AnnotationAssertion( "Wikipedia:Nitric_acid") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Nitric acid") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydrogen trioxonitrate(1-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydroxidodioxidonitrogen") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "trioxonitric acid") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "HNO3") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "HONO2") +AnnotationAssertion(Annotation( "ChemIDplus") "Salpetersaeure") +AnnotationAssertion(Annotation( "IUPAC") "[NO2(OH)]") +AnnotationAssertion(Annotation( "ChEBI") "acide azotique") +AnnotationAssertion(Annotation( "ChemIDplus") "acide nitrique") +AnnotationAssertion(Annotation( "ChemIDplus") "azotic acid") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "hydrogen nitrate") +AnnotationAssertion( "CHEBI:48107") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nitric acid") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (sulfur oxide) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Schwefeloxide") +AnnotationAssertion(Annotation( "ChEBI") "oxides of sulfur") +AnnotationAssertion(Annotation( "ChEBI") "sulfur oxides") +AnnotationAssertion( "CHEBI:48154") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sulfur oxide") +SubClassOf( ) +SubClassOf( ) + +# Class: (trichlorofluoromethane) + +AnnotationAssertion( "A one-carbon compound that is methane in which the hydrogens have been replaced by three chlorine and one fluorine atom.") +AnnotationAssertion( "0") +AnnotationAssertion( "CCl3F") +AnnotationAssertion( "InChI=1S/CCl3F/c2-1(3,4)5") +AnnotationAssertion( "CYRMSUTZVYGINF-UHFFFAOYSA-N") +AnnotationAssertion( "137.36720") +AnnotationAssertion( "135.90496") +AnnotationAssertion( "FC(Cl)(Cl)Cl") +AnnotationAssertion(Annotation( "ChemIDplus") "Beilstein:1732469") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:75-69-4") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:75-69-4") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:1114326") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24189105") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:5727092") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:8006631") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1732469") +AnnotationAssertion( "Wikipedia:Trichlorofluoromethane") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "trichloro(fluoro)methane") +AnnotationAssertion(Annotation( "ChemIDplus") "trichlorofluoromethane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChemIDplus") "CFC-11") +AnnotationAssertion(Annotation( "ChemIDplus") "Eskimon 11") +AnnotationAssertion(Annotation( "ChemIDplus") "Freon 11") +AnnotationAssertion(Annotation( "ChemIDplus") "R-11") +AnnotationAssertion(Annotation( "ChemIDplus") "Refrigerant 11") +AnnotationAssertion(Annotation( "ChemIDplus") "fluorochloroform") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "fluorotrichloromethane") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "monofluorotrichloromethane") +AnnotationAssertion(Annotation( "ChemIDplus") "trichlorofluorocarbon") +AnnotationAssertion(Annotation( "ChemIDplus") "trichloromonofluoromethane") +AnnotationAssertion( "CHEBI:48236") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "trichlorofluoromethane") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (polar solvent) + +AnnotationAssertion( "A solvent that is composed of polar molecules. Polar solvents can dissolve ionic compounds or ionisable covalent compounds.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "polar solvent") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "polar solvents") +AnnotationAssertion( "CHEBI:48354") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "polar solvent") +SubClassOf( ) + +# Class: (non-polar solvent) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:48355") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "non-polar solvent") +SubClassOf( ) + +# Class: (protic solvent) + +AnnotationAssertion( "A polar solvent that is capable of acting as a hydron (proton) donor.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "protogenic solvent") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:48356") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "protic solvent") +SubClassOf( ) +SubClassOf( ) + +# Class: (aprotic solvent) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:48357") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "aprotic solvent") +SubClassOf( ) + +# Class: (polar aprotic solvent) + +AnnotationAssertion( "A solvent with a comparatively high relative permittivity (or dielectric constant), greater than ca. 15, and a sizable permanent dipole moment, that cannot donate suitably labile hydrogen atoms to form strong hydrogen bonds.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "dipolar aprotic solvent") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:48358") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "polar aprotic solvent") +SubClassOf( ) +SubClassOf( ) + +# Class: (protophilic solvent) + +AnnotationAssertion( "Solvent that is capable of acting as a hydron (proton) acceptor.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "protophilic solvent") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "HBA solvent") +AnnotationAssertion(Annotation( "ChEBI") "hydrogen bond acceptor solvent") +AnnotationAssertion( "CHEBI:48359") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "protophilic solvent") +SubClassOf( ) +SubClassOf( ) + +# Class: (amphiprotic solvent) + +AnnotationAssertion( "Self-ionizing solvent possessing both characteristics of Bronsted acids and bases.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "amphiprotic solvent") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:48360") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "amphiprotic solvent") +SubClassOf( ) +SubClassOf( ) + +# Class: (cyano group) + +AnnotationAssertion( "0") +AnnotationAssertion( "CN") +AnnotationAssertion( "26.017") +AnnotationAssertion( "26.00307") +AnnotationAssertion( "C(#N)*") +AnnotationAssertion( "CHEBI:36824") +AnnotationAssertion( "CHEBI:48818") +AnnotationAssertion( "PDBeChem:CYN") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "cyanido") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "cyano") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "-C#N") +AnnotationAssertion(Annotation( "IUPAC") "-CN") +AnnotationAssertion(Annotation( "PDBeChem") "CYANIDE GROUP") +AnnotationAssertion(Annotation( "IUPAC") "NC-") +AnnotationAssertion(Annotation( "ChEBI") "carbonitrile group") +AnnotationAssertion( "CHEBI:48819") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cyano group") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (sulfurous acid) + +AnnotationAssertion( "0") +AnnotationAssertion( "H2O3S") +AnnotationAssertion( "InChI=1S/H2O3S/c1-4(2)3/h(H2,1,2,3)") +AnnotationAssertion( "LSNNMFCWUKXFEE-UHFFFAOYSA-N") +AnnotationAssertion( "82.08008") +AnnotationAssertion( "81.97247") +AnnotationAssertion( "OS(O)=O") +AnnotationAssertion( "CHEBI:26837") +AnnotationAssertion( "CHEBI:9344") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7782-99-2") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:1458") +AnnotationAssertion( "KEGG:C00094") +AnnotationAssertion( "KNApSAcK:C00019662") +AnnotationAssertion( "PDBeChem:SO3") +AnnotationAssertion(Annotation( "UM-BBD") "UM-BBD_compID:c0348") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Sulfurous acid") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "dihydrogen trioxosulfate") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "dihydroxidooxidosulfur") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "sulfurous acid") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "trioxosulfuric acid") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "H2SO3") +AnnotationAssertion(Annotation( "IUPAC") "S(O)(OH)2") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Sulfite") +AnnotationAssertion(Annotation( "IUPAC") "[SO(OH)2]") +AnnotationAssertion(Annotation( "ChEBI") "acide sulfureux") +AnnotationAssertion(Annotation( "ChEBI") "acido sulfuroso") +AnnotationAssertion(Annotation( "ChemIDplus") "schweflige Saeure") +AnnotationAssertion(Annotation( "ChemIDplus") "sulphurous acid") +AnnotationAssertion( "CHEBI:48854") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sulfurous acid") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (hydrogen atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "H") +AnnotationAssertion( "InChI=1S/H") +AnnotationAssertion( "YZCKVEUIGOORGS-UHFFFAOYSA-N") +AnnotationAssertion( "1.00794") +AnnotationAssertion( "1.00783") +AnnotationAssertion( "[H]") +AnnotationAssertion( "CHEBI:24634") +AnnotationAssertion( "CHEBI:49636") +AnnotationAssertion( "WebElements:H") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydrogen") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "1H") +AnnotationAssertion(Annotation( "IUPAC") "H") +AnnotationAssertion(Annotation( "ChEBI") "Wasserstoff") +AnnotationAssertion(Annotation( "ChEBI") "hidrogeno") +AnnotationAssertion(Annotation( "ChEBI") "hydrogen") +AnnotationAssertion(Annotation( "ChEBI") "hydrogene") +AnnotationAssertion( "CHEBI:49637") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydrogen atom") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (xenon atom) + +AnnotationAssertion( "0") +AnnotationAssertion( "Xe") +AnnotationAssertion( "InChI=1S/Xe") +AnnotationAssertion( "FHNFHKCVQCLJFQ-UHFFFAOYSA-N") +AnnotationAssertion( "131.29000") +AnnotationAssertion( "131.90416") +AnnotationAssertion( "[Xe]") +AnnotationAssertion( "CHEBI:32305") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7440-63-3") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:7440-63-3") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7440-63-3") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:16318") +AnnotationAssertion( "KEGG:C13373") +AnnotationAssertion( "WebElements:Xe") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "xenon") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "54Xe") +AnnotationAssertion(Annotation( "IUPAC") "Xe") +AnnotationAssertion(Annotation( "ChEBI") "Xenon") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Xenon") +AnnotationAssertion(Annotation( "ChEBI") "xenon") +AnnotationAssertion( "CHEBI:49957") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "xenon atom") +SubClassOf( ) +SubClassOf( ) + +# Class: (organic amino compound) + +AnnotationAssertion( "A compound formally derived from ammonia by replacing one, two or three hydrogen atoms by organyl groups.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic amino compounds") +AnnotationAssertion( "CHEBI:50047") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic amino compound") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (sulfur coordination entity) + +AnnotationAssertion(Annotation( "ChEBI") "sulfur coordination entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "sulfur coordination compounds") +AnnotationAssertion(Annotation( "ChEBI") "sulfur coordination entities") +AnnotationAssertion( "CHEBI:50094") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sulfur coordination entity") +SubClassOf( ) + +# Class: (trifluoromethyl group) + +AnnotationAssertion( "0") +AnnotationAssertion( "CF3") +AnnotationAssertion( "69.00591") +AnnotationAssertion( "68.99521") +AnnotationAssertion( "C(F)(*)(F)F") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "trifluoromethyl") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "-CF3") +AnnotationAssertion( "CHEBI:50127") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "trifluoromethyl group") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (onium compound) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:50312") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "onium compound") +SubClassOf( ) + +# Class: (onium cation) + +AnnotationAssertion( "Mononuclear cations derived by addition of a hydron to a mononuclear parent hydride of the pnictogen, chalcogen and halogen families.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "onium cations") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "onium cations") +AnnotationAssertion(Annotation( "ChEBI") "onium ion") +AnnotationAssertion(Annotation( "ChEBI") "onium ions") +AnnotationAssertion( "CHEBI:50313") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "onium cation") +SubClassOf( ) + +# Class: (fluoronium) + +AnnotationAssertion( "+1") +AnnotationAssertion( "FH2") +AnnotationAssertion( "InChI=1S/FH2/h1H2/q+1") +AnnotationAssertion( "YNESUKSMQODWNS-UHFFFAOYSA-N") +AnnotationAssertion( "21.01428") +AnnotationAssertion( "21.01350") +AnnotationAssertion( "[H][F+][H]") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "fluoranium") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "fluoronium") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "H2F(+)") +AnnotationAssertion(Annotation( "ChEBI") "[FH2](+)") +AnnotationAssertion( "CHEBI:50314") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluoronium") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (bromonium) + +AnnotationAssertion( "+1") +AnnotationAssertion( "BrH2") +AnnotationAssertion( "InChI=1S/BrH2/h1H2/q+1") +AnnotationAssertion( "IWNNBBVLEFUBNE-UHFFFAOYSA-N") +AnnotationAssertion( "81.91988") +AnnotationAssertion( "80.93344") +AnnotationAssertion( "[H][Br+][H]") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:719134") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "bromanium") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "bromonium") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "H2Br(+)") +AnnotationAssertion(Annotation( "ChEBI") "[BrH2](+)") +AnnotationAssertion( "CHEBI:50316") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "bromonium") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (haloalkyl group) + +AnnotationAssertion( "A group derived from a haloalkane by removal of a hydrogen atom.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "haloalkyl groups") +AnnotationAssertion( "CHEBI:50491") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "haloalkyl group") +SubClassOf( ) + +# Class: (alkyl alcohol) + +AnnotationAssertion( "An aliphatic alcohol in which the aliphatic alkane chain is substituted by a hydroxy group at unspecified position.") +AnnotationAssertion( "CHEBI:22937") +AnnotationAssertion( "CHEBI:50581") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "alkyl alcohols") +AnnotationAssertion(Annotation( "ChEBI") "hydroxyalkane") +AnnotationAssertion(Annotation( "ChEBI") "hydroxyalkanes") +AnnotationAssertion( "CHEBI:50584") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "alkyl alcohol") +SubClassOf( ) + +# Class: (organic molecular entity) + +AnnotationAssertion( "Any molecular entity that contains carbon.") +AnnotationAssertion( "CHEBI:25700") +AnnotationAssertion( "CHEBI:33244") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic compounds") +AnnotationAssertion(Annotation( "ChEBI") "organic entity") +AnnotationAssertion(Annotation( "ChEBI") "organic molecular entities") +AnnotationAssertion( "CHEBI:50860") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (azaarene) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "azaarenes") +AnnotationAssertion( "CHEBI:50893") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "azaarene") +SubClassOf( ) +SubClassOf( ) + +# Class: (carcinogenic agent) + +AnnotationAssertion( "A role played by a chemical compound which is known to induce a process of carcinogenesis by corrupting normal cellular pathways, leading to the acquistion of tumoral capabilities.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "agente carcinogeno") +AnnotationAssertion(Annotation( "ChEBI") "cancerigene") +AnnotationAssertion(Annotation( "ChEBI") "cancerogene") +AnnotationAssertion(Annotation( "ChEBI") "carcinogen") +AnnotationAssertion(Annotation( "ChEBI") "carcinogene") +AnnotationAssertion(Annotation( "ChEBI") "carcinogenic agents") +AnnotationAssertion(Annotation( "ChEBI") "carcinogeno") +AnnotationAssertion(Annotation( "ChEBI") "carcinogens") +AnnotationAssertion( "CHEBI:50903") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "carcinogenic agent") +SubClassOf( ) + +# Class: (role) + +AnnotationAssertion( "A role is particular behaviour which a material entity may exhibit.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:50906") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "role") + +# Class: (neurotoxin) + +AnnotationAssertion( "A poison that interferes with the functions of the nervous system.") +AnnotationAssertion( "CHEBI:50911") +AnnotationAssertion( "Wikipedia:Neurotoxin") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "agente neurotoxico") +AnnotationAssertion(Annotation( "ChEBI") "nerve poison") +AnnotationAssertion(Annotation( "ChEBI") "nerve poisons") +AnnotationAssertion(Annotation( "ChEBI") "neurotoxic agent") +AnnotationAssertion(Annotation( "ChEBI") "neurotoxic agents") +AnnotationAssertion(Annotation( "ChEBI") "neurotoxicant") +AnnotationAssertion(Annotation( "ChEBI") "neurotoxins") +AnnotationAssertion( "CHEBI:50910") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "neurotoxin") +SubClassOf( ) +SubClassOf( ) + +# Class: (fixative) + +AnnotationAssertion( "Any compound used for the purpose of preserving biological tissues from decay in such a way as to allow for the preparation of thin, stained sections for subsequent histological study.") +AnnotationAssertion( "Wikipedia:Fixation_(histology)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "fixating agent") +AnnotationAssertion(Annotation( "ChEBI") "fixating agents") +AnnotationAssertion(Annotation( "ChEBI") "fixation agent") +AnnotationAssertion( "CHEBI:50913") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fixative") +SubClassOf( ) + +# Class: (secondary amino compound) + +AnnotationAssertion( "A compound formally derived from ammonia by replacing two hydrogen atoms by organyl groups.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "secondary amino compounds") +AnnotationAssertion( "CHEBI:50995") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "secondary amino compound") +SubClassOf( ) + +# Class: (titanium coordination entity) + +AnnotationAssertion(Annotation( "ChEBI") "titanium coordination entity") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "titanium coordination compounds") +AnnotationAssertion(Annotation( "ChEBI") "titanium coordination entities") +AnnotationAssertion( "CHEBI:51004") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "titanium coordination entity") +SubClassOf( ) +SubClassOf( ) + +# Class: (nitrate salt) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "nitrate salts") +AnnotationAssertion( "CHEBI:51082") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nitrate salt") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (inorganic nitrate salt) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "inorganic nitrate salts") +AnnotationAssertion(Annotation( "ChEBI") "inorganic nitrates") +AnnotationAssertion( "CHEBI:51084") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "inorganic nitrate salt") +SubClassOf( ) +SubClassOf( ) + +# Class: (chemical role) + +AnnotationAssertion( "A role played by the molecular entity or part thereof within a chemical context.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:51086") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chemical role") +SubClassOf( ) + +# Class: (nitrohydrocarbon) + +AnnotationAssertion( "A C-nitro compound that is a hydrocarbon in which one or more of the hydrogens has been replaced by nitro groups.") +AnnotationAssertion(Annotation( "Europe PMC") "PMCID:PMC3909368") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "nitrohydrocarbons") +AnnotationAssertion( "CHEBI:51129") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nitrohydrocarbon") +SubClassOf( ) + +# Class: (nitroarene) + +AnnotationAssertion( "A nitrohydrocarbon that consists of an arene skeleton substituted by one or more nitro groups at unspecified positions.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "nitroarenes") +AnnotationAssertion( "CHEBI:51132") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nitroarene") +SubClassOf( ) + +# Class: (nitrogen molecular entity) + +AnnotationAssertion( "CHEBI:25556") +AnnotationAssertion( "CHEBI:7594") +AnnotationAssertion( "KEGG:C06061") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Nitrogenous compounds") +AnnotationAssertion(Annotation( "ChEBI") "nitrogen compounds") +AnnotationAssertion(Annotation( "ChEBI") "nitrogen molecular entities") +AnnotationAssertion( "CHEBI:51143") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nitrogen molecular entity") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (nitrogen group) + +AnnotationAssertion(Annotation( "ChEBI") "nitrogen group") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "nitrogen groups") +AnnotationAssertion(Annotation( "ChEBI") "nitrogen-containing group") +AnnotationAssertion(Annotation( "ChEBI") "nitrogenous group") +AnnotationAssertion( "CHEBI:51144") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nitrogen group") +SubClassOf( ) + +# Class: (monofluorobenzene) + +AnnotationAssertion( "The simplest member of the class of monofluorobenzenes that is benzene carrying a single fluoro substituent.") +AnnotationAssertion( "0") +AnnotationAssertion( "C6H5F") +AnnotationAssertion( "InChI=1S/C6H5F/c7-6-4-2-1-3-5-6/h1-5H") +AnnotationAssertion( "PYLWMHQQBFSUBP-UHFFFAOYSA-N") +AnnotationAssertion( "96.10230") +AnnotationAssertion( "96.03753") +AnnotationAssertion( "Fc1ccccc1") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1236623") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:462-06-6") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:462-06-6") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:462-06-6") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:49856") +AnnotationAssertion( "KEGG:C11272") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22976426") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24060903") +AnnotationAssertion( "Patent:CN101224914") +AnnotationAssertion( "Patent:US4390740") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1236623") +AnnotationAssertion( "Wikipedia:Fluorobenzene") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "fluorobenzene") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "monofluorobenzene") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Fluorbenzol") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Fluorobenzene") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "phenyl fluoride") +AnnotationAssertion( "CHEBI:5115") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monofluorobenzene") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (organodiyl group) + +AnnotationAssertion( "Any organic substituent group, regardless of functional type, having two free valences at carbon atom(s).") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organodiyl groups") +AnnotationAssertion( "CHEBI:51422") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organodiyl group") +SubClassOf( ) + +# Class: (organic divalent group) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:51446") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic divalent group") +SubClassOf( ) + +# Class: (organic univalent group) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:51447") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic univalent group") +SubClassOf( ) + +# Class: (organorhodium compound) + +AnnotationAssertion( "A compound containing at least one carbon-rhodium bond.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organorhodium compounds") +AnnotationAssertion( "CHEBI:51493") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organorhodium compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (halometallate anion) + +AnnotationAssertion( "An anionic coordination entity where halido ligands are coordinated to a metal centre.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "halometallate anions") +AnnotationAssertion( "CHEBI:51518") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "halometallate anion") +SubClassOf( ) +SubClassOf( ) + +# Class: (perhalometallate anion) + +AnnotationAssertion( "A halometallate anion where all of the ligands coordinated to the metal atom are halido ligands.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "perhalometallate anions") +AnnotationAssertion( "CHEBI:51519") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "perhalometallate anion") +SubClassOf( ) + +# Class: (chlorometallate anion) + +AnnotationAssertion( "An anionic coordination entity where chlorido ligands are coordinated to a metal centre.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "chloridometallate anion") +AnnotationAssertion(Annotation( "ChEBI") "chlorometallate anions") +AnnotationAssertion( "CHEBI:51520") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chlorometallate anion") +SubClassOf( ) + +# Class: (perchlorometallate anion) + +AnnotationAssertion( "An anionic coordination entity where all of the ligands coordinated to the metal atom are chlorido ligands.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "perchlorometallate anions") +AnnotationAssertion( "CHEBI:51521") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "perchlorometallate anion") +SubClassOf( ) +SubClassOf( ) + +# Class: (biochemical role) + +AnnotationAssertion( "A biological role played by the molecular entity or part thereof within a biochemical context.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:52206") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "biochemical role") +SubClassOf( ) + +# Class: (aetiopathogenetic role) + +AnnotationAssertion( "A role played by the molecular entity or part thereof which causes the development of a pathological process.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "etiopathogenetic agent") +AnnotationAssertion(Annotation( "ChEBI") "etiopathogenetic role") +AnnotationAssertion( "CHEBI:52209") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "aetiopathogenetic role") +SubClassOf( ) + +# Class: (physiological role) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:52211") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "physiological role") +SubClassOf( ) + +# Class: (pharmaceutical) + +AnnotationAssertion( "Any substance introduced into a living organism with therapeutic or diagnostic purpose.") +AnnotationAssertion( "CHEBI:33293") +AnnotationAssertion( "CHEBI:33294") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "farmaco") +AnnotationAssertion(Annotation( "ChEBI") "medicament") +AnnotationAssertion(Annotation( "ChEBI") "pharmaceuticals") +AnnotationAssertion( "CHEBI:52217") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "pharmaceutical") +SubClassOf( ) + +# Class: (inorganic hydroxy compound) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "inorganic hydroxides") +AnnotationAssertion( "CHEBI:52625") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "inorganic hydroxy compound") +SubClassOf( ) +SubClassOf( ) + +# Class: (tetramethylammonium bromide) + +AnnotationAssertion( "The bromide salt of tetramethylammonium.") +AnnotationAssertion( "0") +AnnotationAssertion( "C4H12BrN") +AnnotationAssertion( "InChI=1S/C4H12N.BrH/c1-5(2,3)4;/h1-4H3;1H/q+1;/p-1") +AnnotationAssertion( "DDFYFBUWEBINLX-UHFFFAOYSA-M") +AnnotationAssertion( "154.04900") +AnnotationAssertion( "153.01531") +AnnotationAssertion( "[Br-].C[N+](C)(C)C") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:64-20-0") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:64-20-0") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24804652") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:6196640") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:3620955") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "N,N,N-trimethylmethanaminium bromide") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "TMAB") +AnnotationAssertion( "CHEBI:55317") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tetramethylammonium bromide") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (heterocyclic compound) + +AnnotationAssertion( "A cyclic compound having as ring members atoms of at least two different elements.") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Heterocyclic compound") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "compuesto heterociclico") +AnnotationAssertion(Annotation( "IUPAC") "compuestos heterociclicos") +AnnotationAssertion(Annotation( "ChEBI") "heterocycle") +AnnotationAssertion(Annotation( "ChEBI") "heterocyclic compounds") +AnnotationAssertion( "CHEBI:5686") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "heterocyclic compound") +SubClassOf( ) + +# Class: (short-chain fatty acid anion) + +AnnotationAssertion( "Any fatty acid anion obtained by removal of a proton from the carboxy group of a short-chain fatty acid (chain length of less than C6).") +AnnotationAssertion( "-1") +AnnotationAssertion( "CO2R") +AnnotationAssertion( "44.010") +AnnotationAssertion( "43.98983") +AnnotationAssertion( "[O-]C([*])=O") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "UniProt") "a short-chain fatty acid") +AnnotationAssertion(Annotation( "ChEBI") "short-chain fatty acid anions") +AnnotationAssertion( "CHEBI:58951") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "short-chain fatty acid anion") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (saturated fatty acid anion) + +AnnotationAssertion( "Any fatty acid anion in which there is no C-C unsaturation.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "saturated fatty acid anions") +AnnotationAssertion( "CHEBI:58953") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "saturated fatty acid anion") +SubClassOf( ) + +# Class: (sodium hexachloroplatinate) + +AnnotationAssertion( "An inorganic sodium salt comprising separate sodium cations and octahedral [PtCl6](2-) anions.") +AnnotationAssertion( "0") +AnnotationAssertion( "Cl6Na2Pt") +AnnotationAssertion( "InChI=1S/6ClH.2Na.Pt/h6*1H;;;/q;;;;;;2*+1;+4/p-6") +AnnotationAssertion( "QGFSULIVEYGQQY-UHFFFAOYSA-H") +AnnotationAssertion( "453.78200") +AnnotationAssertion( "450.75745") +AnnotationAssertion( "[Na+].[Na+].Cl[Pt--](Cl)(Cl)(Cl)(Cl)Cl") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:16923-58-3") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:2936374") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:6541706") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:11322243") +AnnotationAssertion( "Wikipedia:Sodium_hexachloroplatinate") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "sodium hexachloridoplatinate(2-)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "sodium hexachloridoplatinate(IV)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChemIDplus") "Disodium hexachloroplatinate") +AnnotationAssertion( "CHEBI:59606") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sodium hexachloroplatinate") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (phosphine oxide) + +AnnotationAssertion( "Phosphine oxides are organophosphorus compounds with the formula OPR3, where R = alkyl or aryl. They are considered to be the most stable organophosphorus compounds.") +AnnotationAssertion( "0") +AnnotationAssertion( "OPR3") +AnnotationAssertion( "46.97320") +AnnotationAssertion( "46.96868") +AnnotationAssertion( "[*]P([*])([*])=O") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "phosphane oxide") +AnnotationAssertion(Annotation( "ChEBI") "phosphane oxides") +AnnotationAssertion(Annotation( "ChEBI") "phosphine oxides") +AnnotationAssertion( "CHEBI:59656") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "phosphine oxide") +SubClassOf( ) + +# Class: (phosphoric acids) + +AnnotationAssertion( "Compounds containing one or more phosphoric acid units.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:59698") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "phosphoric acids") +SubClassOf( ) + +# Class: (nucleophilic reagent) + +AnnotationAssertion( "A reagent that forms a bond to its reaction partner (the electrophile) by donating both bonding electrons.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "nucleophile") +AnnotationAssertion(Annotation( "ChEBI") "nucleophiles") +AnnotationAssertion(Annotation( "ChEBI") "nucleophilic reagents") +AnnotationAssertion( "CHEBI:59740") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nucleophilic reagent") +SubClassOf( ) +SubClassOf( ) + +# Class: (chemical substance) + +AnnotationAssertion( "A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Chemische Substanz") +AnnotationAssertion( "CHEBI:59999") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chemical substance") +SubClassOf( ) + +# Class: (monovalent inorganic cation) + +AnnotationAssertion( "An atom or small molecule with a positive charge that does not contain carbon in covalent linkage, with a valency of one.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "UniProt") "a monovalent cation") +AnnotationAssertion( "CHEBI:60242") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monovalent inorganic cation") +SubClassOf( ) + +# Class: (reactive nitrogen species) + +AnnotationAssertion( "A family of nitrogen molecular entities which are highly reactive and derived from nitric oxide (.NO) and superoxide (O2.(-)) produced via the enzymatic activity of inducible nitric oxide synthase 2 (NOS2) and NADPH oxidase respectively.") +AnnotationAssertion(Annotation( "SUBMITTER") "PMID:12076975") +AnnotationAssertion(Annotation( "SUBMITTER") "PMID:17667957") +AnnotationAssertion(Annotation( "SUBMITTER") "PMID:9741578") +AnnotationAssertion( "Wikipedia:Reactive_nitrogen_species") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "RNI") +AnnotationAssertion(Annotation( "SUBMITTER") "RNS") +AnnotationAssertion( "CHEBI:62764") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "reactive nitrogen species") +SubClassOf( ) + +# Class: (sodium nitrate) + +AnnotationAssertion( "The inorganic nitrate salt of sodium.") +AnnotationAssertion( "0") +AnnotationAssertion( "NNaO3") +AnnotationAssertion( "InChI=1S/NO3.Na/c2-1(3)4;/q-1;+1") +AnnotationAssertion( "VWDWKYIASSYTQR-UHFFFAOYSA-N") +AnnotationAssertion( "84.99470") +AnnotationAssertion( "84.97759") +AnnotationAssertion( "[Na+].[O-][N+]([O-])=O") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7631-99-4") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:11343077") +AnnotationAssertion( "Wikipedia:Sodium_nitrate") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "sodium nitrate") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "sodium trioxidonitrate(1-)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "Chile saltpeter") +AnnotationAssertion(Annotation( "ChemIDplus") "Cubic niter") +AnnotationAssertion(Annotation( "ChemIDplus") "Niter") +AnnotationAssertion(Annotation( "ChemIDplus") "Nitrate de sodium") +AnnotationAssertion(Annotation( "ChemIDplus") "Nitrate of soda") +AnnotationAssertion(Annotation( "SUBMITTER") "Nitrate of soda") +AnnotationAssertion(Annotation( "ChemIDplus") "Nitric acid monosodium salt") +AnnotationAssertion(Annotation( "ChemIDplus") "Nitric acid sodium salt (1:1)") +AnnotationAssertion(Annotation( "ChemIDplus") "Nitric acid, sodium salt") +AnnotationAssertion(Annotation( "ChemIDplus") "Sodium saltpeter") +AnnotationAssertion(Annotation( "ChemIDplus") "Sodium(I) nitrate (1:1)") +AnnotationAssertion( "CHEBI:63005") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sodium nitrate") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (reducing agent) + +AnnotationAssertion( "The element or compound in a reduction-oxidation (redox) reaction that donates an electron to another species.") +AnnotationAssertion( "Wikipedia:Reducing_agent") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "reducer") +AnnotationAssertion(Annotation( "ChEBI") "reducers") +AnnotationAssertion(Annotation( "ChEBI") "reducing agents") +AnnotationAssertion(Annotation( "ChEBI") "reductant") +AnnotationAssertion(Annotation( "ChEBI") "reductants") +AnnotationAssertion( "CHEBI:63247") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "reducing agent") +SubClassOf( ) + +# Class: (oxidising agent) + +AnnotationAssertion( "A substance that removes electrons from another reactant in a redox reaction.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "oxidant") +AnnotationAssertion(Annotation( "ChEBI") "oxidants") +AnnotationAssertion(Annotation( "ChEBI") "oxidiser") +AnnotationAssertion(Annotation( "ChEBI") "oxidisers") +AnnotationAssertion(Annotation( "ChEBI") "oxidising agents") +AnnotationAssertion(Annotation( "ChEBI") "oxidizer") +AnnotationAssertion(Annotation( "ChEBI") "oxidizers") +AnnotationAssertion(Annotation( "ChEBI") "oxidizing agent") +AnnotationAssertion(Annotation( "ChEBI") "oxidizing agents") +AnnotationAssertion( "CHEBI:63248") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oxidising agent") +SubClassOf( ) + +# Class: (explosive) + +AnnotationAssertion( "A substance capable of undergoing rapid and highly exothermic decomposition.") +AnnotationAssertion( "Wikipedia:Explosive_material") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "explosive compound") +AnnotationAssertion(Annotation( "ChEBI") "explosive compounds") +AnnotationAssertion(Annotation( "ChEBI") "explosive material") +AnnotationAssertion(Annotation( "ChEBI") "explosives") +AnnotationAssertion(Annotation( "ChEBI") "explosives chemical") +AnnotationAssertion(Annotation( "ChEBI") "explosives chemicals") +AnnotationAssertion( "CHEBI:63490") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "explosive") +SubClassOf( ) + +# Class: (sodium tungstate) + +AnnotationAssertion( "An inorganic sodium salt having tungstate as the counterion. Combines with hydrogen peroxide for the oxidation of secondary amines to nitrones.") +AnnotationAssertion( "0") +AnnotationAssertion( "Na2O4W") +AnnotationAssertion( "InChI=1S/2Na.4O.W/q2*+1;;;2*-1;") +AnnotationAssertion( "XMVONEAAOPAGAO-UHFFFAOYSA-N") +AnnotationAssertion( "293.82000") +AnnotationAssertion( "293.91013") +AnnotationAssertion( "[Na+].[Na+].[O-][W]([O-])(=O)=O") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:13472-45-2") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:11343345") +AnnotationAssertion( "Wikipedia:Sodium_tungstate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChemIDplus") "Disodium tetraoxotungstate") +AnnotationAssertion(Annotation( "ChemIDplus") "Disodium tungstate") +AnnotationAssertion(Annotation( "ChEBI") "Na2WO4") +AnnotationAssertion(Annotation( "ChemIDplus") "Sodium tungstate(VI)") +AnnotationAssertion(Annotation( "ChemIDplus") "Sodium tungsten oxide") +AnnotationAssertion(Annotation( "ChemIDplus") "Sodium wolframate") +AnnotationAssertion(Annotation( "ChemIDplus") "Tungstic acid, disodium salt") +AnnotationAssertion(Annotation( "ChEBI") "sodium tetraoxotungstate(VI)") +AnnotationAssertion( "CHEBI:63940") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sodium tungstate") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (food additive) + +AnnotationAssertion( "Any substance which is added to food to preserve or enhance its flavour and/or appearance.") +AnnotationAssertion( "Wikipedia:Food_additive") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "food additives") +AnnotationAssertion( "CHEBI:64047") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "food additive") +SubClassOf( ) +SubClassOf( ) + +# Class: (food acidity regulator) + +AnnotationAssertion( "A food additive that is used to change or otherwise control the acidity or alkalinity of foods. They may be acids, bases, neutralising agents or buffering agents.") +AnnotationAssertion( "Wikipedia:Acidity_regulator") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "acidity regulator") +AnnotationAssertion(Annotation( "ChEBI") "acidity regulators") +AnnotationAssertion(Annotation( "ChEBI") "food acidity regulators") +AnnotationAssertion(Annotation( "ChEBI") "pH control agent") +AnnotationAssertion(Annotation( "ChEBI") "pH control agents") +AnnotationAssertion( "CHEBI:64049") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "food acidity regulator") +SubClassOf( ) + +# Class: (one-carbon compound) + +AnnotationAssertion( "An organic molecular entity containing a single carbon atom (C1).") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "one-carbon compounds") +AnnotationAssertion( "CHEBI:64708") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "one-carbon compound") +SubClassOf( ) + +# Class: (organic acid) + +AnnotationAssertion( "Any organic molecular entity that is acidic and contains carbon in covalent linkage.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic acids") +AnnotationAssertion( "CHEBI:64709") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic acid") +SubClassOf( ) + +# Class: (poison) + +AnnotationAssertion( "Any substance that causes disturbance to organisms by chemical reaction or other activity on the molecular scale, when a sufficient quantity is absorbed by the organism.") +AnnotationAssertion( "Wikipedia:Poison") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "poisonous agent") +AnnotationAssertion(Annotation( "ChEBI") "poisonous agents") +AnnotationAssertion(Annotation( "ChEBI") "poisonous substance") +AnnotationAssertion(Annotation( "ChEBI") "poisonous substances") +AnnotationAssertion(Annotation( "ChEBI") "poisons") +AnnotationAssertion(Annotation( "ChEBI") "toxic agent") +AnnotationAssertion(Annotation( "ChEBI") "toxic agents") +AnnotationAssertion(Annotation( "ChEBI") "toxic substance") +AnnotationAssertion(Annotation( "ChEBI") "toxic substances") +AnnotationAssertion( "CHEBI:64909") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "poison") +SubClassOf( ) + +# Class: (food preservative) + +AnnotationAssertion( "Substances which are added to food in order to prevent decomposition caused by microbial growth or by undesirable chemical changes.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "food preservatives") +AnnotationAssertion( "CHEBI:65255") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "food preservative") +SubClassOf( ) + +# Class: (antimicrobial food preservative) + +AnnotationAssertion( "A food preservative which prevents decomposition of food by preventing the growth of fungi or bacteria. In European countries, E-numbers for permitted food preservatives are from E200 to E299, divided into sorbates (E200-209), benzoates (E210-219), sulfites (E220-229), phenols and formates (E230-239), nitrates (E240-259), acetates (E260-269), lactates (E270-279), propionates (E280-289) and others (E290-299).") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "antimicrobial food preservatives") +AnnotationAssertion(Annotation( "ChEBI") "antimicrobial preservative") +AnnotationAssertion(Annotation( "ChEBI") "antimicrobial preservatives") +AnnotationAssertion( "CHEBI:65256") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "antimicrobial food preservative") +SubClassOf( ) +SubClassOf( ) + +# Class: (potassium fluoride) + +AnnotationAssertion( "A fluoride salt having K+ as the counterion.") +AnnotationAssertion( "0") +AnnotationAssertion( "FK") +AnnotationAssertion( "InChI=1S/FH.K/h1H;/q;+1/p-1") +AnnotationAssertion( "NROKBHXJSPEDAR-UHFFFAOYSA-M") +AnnotationAssertion( "58.09670") +AnnotationAssertion( "57.96211") +AnnotationAssertion( "[F-].[K+]") +AnnotationAssertion(Annotation( "SUBMITTER") "Beilstein:3902818") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:7789-23-3") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:7789-23-3") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:21412559") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:21486073") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:21636316") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:21863787") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22013284") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22169214") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22359362") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22700337") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22721409") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:22777777") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:11339017") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:3902818") +AnnotationAssertion( "Wikipedia:Potassium_fluoride") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "potassium fluoride") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChemIDplus") "Fluorure de potassium") +AnnotationAssertion(Annotation( "ChemIDplus") "Potassium fluorure") +AnnotationAssertion( "CHEBI:66872") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "potassium fluoride") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (organic molecule) + +AnnotationAssertion( "Any molecule that consists of at least one carbon atom as part of the electrically neutral entity.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic compound") +AnnotationAssertion(Annotation( "ChEBI") "organic compounds") +AnnotationAssertion(Annotation( "ChEBI") "organic molecules") +AnnotationAssertion( "CHEBI:72695") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic molecule") +SubClassOf( ) +SubClassOf( ) + +# Class: (astringent) + +AnnotationAssertion( "A compound that causes the contraction of body tissues, typically used to reduce bleeding from minor abrasions.") +AnnotationAssertion( "Wikipedia:Astringent") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "adstringent") +AnnotationAssertion(Annotation( "ChEBI") "adstringents") +AnnotationAssertion(Annotation( "ChEBI") "astringents") +AnnotationAssertion( "CHEBI:74783") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "astringent") +SubClassOf( ) + +# Class: (eukaryotic metabolite) + +AnnotationAssertion( "Any metabolite produced during a metabolic reaction in eukaryotes, the taxon that include members of the fungi, plantae and animalia kingdoms.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "eukaryotic metabolites") +AnnotationAssertion( "CHEBI:75763") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "eukaryotic metabolite") +SubClassOf( ) + +# Class: (animal metabolite) + +AnnotationAssertion( "Any eukaryotic metabolite produced during a metabolic reaction in animals that include diverse creatures from sponges, insects to mammals.") +AnnotationAssertion( "CHEBI:77721") +AnnotationAssertion( "CHEBI:77743") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "animal metabolites") +AnnotationAssertion( "CHEBI:75767") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "animal metabolite") +SubClassOf( ) + +# Class: (mammalian metabolite) + +AnnotationAssertion( "Any animal metabolite produced during a metabolic reaction in mammals.") +AnnotationAssertion( "CHEBI:77464") +AnnotationAssertion( "CHEBI:77744") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "mammalian metabolites") +AnnotationAssertion( "CHEBI:75768") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mammalian metabolite") +SubClassOf( ) + +# Class: (mouse metabolite) + +AnnotationAssertion( "Any mammalian metabolite produced during a metabolic reaction in a mouse (Mus musculus).") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Mus musculus metabolite") +AnnotationAssertion(Annotation( "ChEBI") "Mus musculus metabolites") +AnnotationAssertion(Annotation( "ChEBI") "mouse metabolites") +AnnotationAssertion( "CHEBI:75771") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mouse metabolite") +SubClassOf( ) + +# Class: (Saccharomyces cerevisiae metabolite) + +AnnotationAssertion( "Any fungal metabolite produced during a metabolic reaction in Baker's yeast (Saccharomyces cerevisiae).") +AnnotationAssertion( "CHEBI:76949") +AnnotationAssertion( "CHEBI:76951") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "S. cerevisiae metabolite") +AnnotationAssertion(Annotation( "ChEBI") "S. cerevisiae metabolites") +AnnotationAssertion(Annotation( "ChEBI") "S. cerevisiae secondary metabolite") +AnnotationAssertion(Annotation( "ChEBI") "S. cerevisiae secondary metabolites") +AnnotationAssertion(Annotation( "ChEBI") "Saccharomyces cerevisiae metabolites") +AnnotationAssertion(Annotation( "ChEBI") "Saccharomyces cerevisiae secondary metabolites") +AnnotationAssertion(Annotation( "ChEBI") "baker's yeast metabolite") +AnnotationAssertion(Annotation( "ChEBI") "baker's yeast metabolites") +AnnotationAssertion(Annotation( "ChEBI") "baker's yeast secondary metabolite") +AnnotationAssertion(Annotation( "ChEBI") "baker's yeast secondary metabolites") +AnnotationAssertion( "CHEBI:75772") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "Saccharomyces cerevisiae metabolite") +SubClassOf( ) + +# Class: (prokaryotic metabolite) + +AnnotationAssertion( "Any metabolite produced during a metabolic reaction in prokaryotes, the taxon that include members of domains such as the bacteria and archaea.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "prokaryotic metabolites") +AnnotationAssertion( "CHEBI:75787") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "prokaryotic metabolite") +SubClassOf( ) + +# Class: (nitroalkane) + +AnnotationAssertion( "A nitrohydrocarbon that is an alkane in which one of the hydrogens has been replaced by a nitro group.") +AnnotationAssertion( "0") +AnnotationAssertion( "NO2R") +AnnotationAssertion( "46.006") +AnnotationAssertion( "45.99290") +AnnotationAssertion( "KEGG:C06058") +AnnotationAssertion( "MetaCyc:Nitroalkanes") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Nitroalkane") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "nitroalkanes") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Nitroalkan") +AnnotationAssertion(Annotation( "ChEBI") "Nitroparaffin") +AnnotationAssertion( "CHEBI:7587") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nitroalkane") +SubClassOf( ) + +# Class: (deuterated compound) + +AnnotationAssertion( "Any isotopically modified compound that has one or more hydrogen atoms replaced by deuterium.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "(2)H-labeled compound") +AnnotationAssertion(Annotation( "ChEBI") "(2)H-labeled compounds") +AnnotationAssertion(Annotation( "ChEBI") "(2)H-labelled compound") +AnnotationAssertion(Annotation( "ChEBI") "(2)H-labelled compounds") +AnnotationAssertion(Annotation( "ChEBI") "deuterated compounds") +AnnotationAssertion(Annotation( "ChEBI") "deuterium-labeled compound") +AnnotationAssertion(Annotation( "ChEBI") "deuterium-labeled compounds") +AnnotationAssertion(Annotation( "ChEBI") "deuterium-labelled compound") +AnnotationAssertion(Annotation( "ChEBI") "deuterium-labelled compounds") +AnnotationAssertion( "CHEBI:76107") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "deuterated compound") +SubClassOf( ) + +# Class: (xenobiotic metabolite) + +AnnotationAssertion( "Any metabolite produced by metabolism of a xenobiotic compound.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "xenobiotic metabolites") +AnnotationAssertion( "CHEBI:76206") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "xenobiotic metabolite") +SubClassOf( ) + +# Class: (greenhouse gas) + +AnnotationAssertion( "A gas in an atmosphere that absorbs and emits radiation within the thermal infrared range, so contributing to the 'greenhouse effect'.") +AnnotationAssertion( "Wikipedia:Greenhouse_gas") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "greenhouse gases") +AnnotationAssertion( "CHEBI:76413") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "greenhouse gas") +SubClassOf( ) + +# Class: (EC 4.* (lyase) inhibitor) + +AnnotationAssertion( "An enzyme inhibitor which interferes with the action of a lyase (EC 4.*.*.*). Lyases are enzymes cleaving C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation.") +AnnotationAssertion( "Wikipedia:Lyase") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "EC 4.* (lyase) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "EC 4.* inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "EC 4.* inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "EC 4.*.*.* inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "EC 4.*.*.* inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "lyase (EC 4.*) inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "lyase (EC 4.*) inhibitorS") +AnnotationAssertion(Annotation( "ChEBI") "lyase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "lyase inhibitors") +AnnotationAssertion( "CHEBI:76710") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "EC 4.* (lyase) inhibitor") +SubClassOf( ) + +# Class: (EC 4.3.* (C-N lyase) inhibitor) + +AnnotationAssertion( "A lyase inhibitor which inhibits the action of a C-N lyase (EC 4.3.*.*).") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "C-N lyase (EC 4.3.*) inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "C-N lyase (EC 4.3.*) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "C-N lyase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "C-N lyase inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "EC 4.3.* (C-N lyase) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "EC 4.3.* inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "EC 4.3.* inhibitors") +AnnotationAssertion( "CHEBI:76713") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "EC 4.3.* (C-N lyase) inhibitor") +SubClassOf( ) + +# Class: (EC 1.* (oxidoreductase) inhibitor) + +AnnotationAssertion( "An enzyme inhibitor which interferes with the action of an oxidoreductase (EC 1.*.*.*).") +AnnotationAssertion( "Wikipedia:Oxidoreductase") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "EC 1.* (oxidoreductase) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "EC 1.* inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "EC 1.* inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "oxidoreductase (EC 1.*) inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "oxidoreductase (EC 1.*) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "oxidoreductase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "oxidoreductase inhibitors") +AnnotationAssertion( "CHEBI:76725") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "EC 1.* (oxidoreductase) inhibitor") +SubClassOf( ) + +# Class: (EC 1.9.* (oxidoreductase acting on donor heme group) inhibitor) + +AnnotationAssertion( "An oxidoreductase inhibitor which interferes with the action of an oxidoreductase acting on a heme group of donors (EC 1.9.*.*).") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "EC 1.9.* (oxidoreductase acting on a heme group of donors) inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "EC 1.9.* (oxidoreductase acting on a heme group of donors) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "EC 1.9.* (oxidoreductase acting on donor heme group) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "EC 1.9.* inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "EC 1.9.* inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "oxidoreductase acting on a heme group of donors (EC 1.9.*) inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "oxidoreductase acting on a heme group of donors (EC 1.9.*) inhibitors") +AnnotationAssertion( "CHEBI:76736") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "EC 1.9.* (oxidoreductase acting on donor heme group) inhibitor") +SubClassOf( ) + +# Class: (EC 3.* (hydrolase) inhibitor) + +AnnotationAssertion( "Any enzyme inhibitor that interferes with the action of a hydrolase (EC 3.*.*.*).") +AnnotationAssertion( "Wikipedia:Hydrolase") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "EC 3.* (hydrolase) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "EC 3.* inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "EC 3.* inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "EC 3.*.*.* inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "EC 3.*.*.* inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "hydrolase (EC 3.*) inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "hydrolase (EC 3.*) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "hydrolase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "hydrolase inhibitors") +AnnotationAssertion( "CHEBI:76759") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "EC 3.* (hydrolase) inhibitor") +SubClassOf( ) + +# Class: (EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor) + +AnnotationAssertion( "Any hydrolase inhibitor that interferes with the action of a hydrolase acting on C-N bonds, other than peptide bonds (EC 3.5.*.*).") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "EC 3.5.* inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "EC 3.5.* inhibitors") +AnnotationAssertion( "CHEBI:76764") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor") +SubClassOf( ) + +# Class: (EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor) + +AnnotationAssertion( "An EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor that interferes with the action of any non-peptide linear amide C-N hydrolase (EC 3.5.1.*).") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "EC 3.5.1.* inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "EC 3.5.1.* inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitors") +AnnotationAssertion( "CHEBI:76807") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor") +SubClassOf( ) + +# Class: (EC 4.3.1.* (ammonia-lyase) inhibitor) + +AnnotationAssertion( "An EC 4.3.* (C-N lyase) inhibitor that interferes with the action of any ammonia-lyase (EC 4.3.1.*).") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "EC 4.3.1.* (ammonia-lyase) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "EC 4.3.1.* (ammonia-lyases) inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "EC 4.3.1.* (ammonia-lyases) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "EC 4.3.1.* inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "EC 4.3.1.* inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "ammonia-lyase (EC 4.3.1.*) inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "ammonia-lyase (EC 4.3.1.*) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "ammonia-lyase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "ammonia-lyase inhibitors") +AnnotationAssertion( "CHEBI:76832") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "EC 4.3.1.* (ammonia-lyase) inhibitor") +SubClassOf( ) + +# Class: (EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitor) + +AnnotationAssertion( "An EC 1.9.* (oxidoreductase acting on donor heme group) inhibitor that interferes with the action of any such enzyme using oxygen as acceptor (EC 1.9.3.*).") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "EC 1.9.3.* inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "EC 1.9.3.* inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "oxidoreductase acting on donor heme group, oxygen as acceptor (EC 1.9.3.*) inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "oxidoreductase acting on donor heme group, oxygen as acceptor (EC 1.9.3.*) inhibitors") +AnnotationAssertion( "CHEBI:76870") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitor") +SubClassOf( ) + +# Class: (plant metabolite) + +AnnotationAssertion( "Any eukaryotic metabolite produced during a metabolic reaction in plants, the kingdom that include flowering plants, conifers and other gymnosperms.") +AnnotationAssertion( "CHEBI:75766") +AnnotationAssertion( "CHEBI:76925") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "plant metabolites") +AnnotationAssertion(Annotation( "ChEBI") "plant secondary metabolites") +AnnotationAssertion( "CHEBI:76924") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "plant metabolite") +SubClassOf( ) + +# Class: (pathway inhibitor) + +AnnotationAssertion( "An enzyme inhibitor that interferes with one or more steps in a metabolic pathway.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "metabolic pathway inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "metabolic pathway inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "pathway inhibitors") +AnnotationAssertion( "CHEBI:76932") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "pathway inhibitor") +SubClassOf( ) + +# Class: (fungal metabolite) + +AnnotationAssertion( "Any eukaryotic metabolite produced during a metabolic reaction in fungi, the kingdom that includes microorganisms such as the yeasts and moulds.") +AnnotationAssertion( "CHEBI:75765") +AnnotationAssertion( "CHEBI:76947") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "fungal metabolites") +AnnotationAssertion( "CHEBI:76946") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fungal metabolite") +SubClassOf( ) + +# Class: (human xenobiotic metabolite) + +AnnotationAssertion( "Any human metabolite produced by metabolism of a xenobiotic compound in humans.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "human xenobiotic metabolites") +AnnotationAssertion( "CHEBI:76967") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "human xenobiotic metabolite") +SubClassOf( ) +SubClassOf( ) + +# Class: (bacterial metabolite) + +AnnotationAssertion( "Any prokaryotic metabolite produced during a metabolic reaction in bacteria.") +AnnotationAssertion( "CHEBI:75760") +AnnotationAssertion( "CHEBI:76970") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:76969") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "bacterial metabolite") +SubClassOf( ) + +# Class: (Escherichia coli metabolite) + +AnnotationAssertion( "Any bacterial metabolite produced during a metabolic reaction in Escherichia coli.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "E.coli metabolite") +AnnotationAssertion(Annotation( "ChEBI") "E.coli metabolites") +AnnotationAssertion(Annotation( "ChEBI") "Escherichia coli metabolites") +AnnotationAssertion( "CHEBI:76971") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "Escherichia coli metabolite") +SubClassOf( ) + +# Class: (bacterial xenobiotic metabolite) + +AnnotationAssertion( "Any bacterial metabolite produced by metabolism of a xenobiotic compound in bacteria.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "bacterial xenobiotic metabolites") +AnnotationAssertion( "CHEBI:76976") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "bacterial xenobiotic metabolite") +SubClassOf( ) +SubClassOf( ) + +# Class: (histological dye) + +AnnotationAssertion( "A dye used in microscopic or electron microscopic examination of cells and tissues to give contrast and to highlight particular features of interest, such as nuclei and cytoplasm.") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:21756020") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:21838612") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:23901948") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "biological stain") +AnnotationAssertion(Annotation( "ChEBI") "biological stains") +AnnotationAssertion(Annotation( "ChEBI") "histological dyes") +AnnotationAssertion(Annotation( "ChEBI") "histological stain") +AnnotationAssertion(Annotation( "ChEBI") "histological stains") +AnnotationAssertion( "CHEBI:77178") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "histological dye") +SubClassOf( ) + +# Class: (nitromethane) + +AnnotationAssertion( "A primary nitroalkane that is methane in which one of the hydrogens is replace by a nitro group. A polar solvent (b.p. 101 degreeC), it is an important starting material in organic synthesis. It is also used as a fuel for rockets and radio-controlled models.") +AnnotationAssertion( "0") +AnnotationAssertion( "CH3NO2") +AnnotationAssertion( "InChI=1S/CH3NO2/c1-2(3)4/h1H3") +AnnotationAssertion( "LYGJENNIWJXYER-UHFFFAOYSA-N") +AnnotationAssertion( "61.04000") +AnnotationAssertion( "61.01638") +AnnotationAssertion( "C[N+]([O-])=O") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:75-52-5") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:75-52-5") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:75-52-5") +AnnotationAssertion( "KEGG:C19275") +AnnotationAssertion( "MetaCyc:CPD-8133") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:11100413") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:21860501") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:26735907") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:26800205") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:4207867") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:999282") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1698205") +AnnotationAssertion( "Wikipedia:Nitromethane") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "nitromethane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "CH3NO2") +AnnotationAssertion(Annotation( "ChEBI") "MeNO2") +AnnotationAssertion( "CHEBI:77701") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nitromethane") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (EC 4.3.1.3 (histidine ammonia-lyase) inhibitor) + +AnnotationAssertion( "An EC 4.3.1.* (ammonia-lyase) inhibitor that interferes with the action of histidine ammonia-lyase (EC 4.3.1.3).") +AnnotationAssertion( "Wikipedia:Histidine_ammonia-lyase") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "EC 4.3.1.3 (histidine ammonia-lyase) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "EC 4.3.1.3 inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "EC 4.3.1.3 inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "L-histidine ammonia-lyase (urocanate-forming) inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "L-histidine ammonia-lyase (urocanate-forming) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "L-histidine ammonia-lyase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "L-histidine ammonia-lyase inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "histidase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "histidase inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "histidinase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "histidinase inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "histidine alpha-deaminase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "histidine alpha-deaminase inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "histidine ammonia-lyase (EC 4.3.1.3) inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "histidine ammonia-lyase (EC 4.3.1.3) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "histidine ammonia-lyase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "histidine ammonia-lyase inhibitors") +AnnotationAssertion( "CHEBI:77703") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "EC 4.3.1.3 (histidine ammonia-lyase) inhibitor") +SubClassOf( ) + +# Class: (human metabolite) + +AnnotationAssertion( "Any mammalian metabolite produced during a metabolic reaction in humans (Homo sapiens).") +AnnotationAssertion( "CHEBI:75770") +AnnotationAssertion( "CHEBI:77123") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "H. sapiens metabolite") +AnnotationAssertion(Annotation( "ChEBI") "H. sapiens metabolites") +AnnotationAssertion(Annotation( "ChEBI") "Homo sapiens metabolite") +AnnotationAssertion(Annotation( "ChEBI") "Homo sapiens metabolites") +AnnotationAssertion( "CHEBI:77746") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "human metabolite") +SubClassOf( ) + +# Class: (EC 3.5.1.4 (amidase) inhibitor) + +AnnotationAssertion( "An EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor that interferes with the action of amidase (EC 3.5.1.4).") +AnnotationAssertion( "Wikipedia:Amidase") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "EC 3.5.1.4 (amidase) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "EC 3.5.1.4 inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "EC 3.5.1.4 inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "N-acetylaminohydrolase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "N-acetylaminohydrolase inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "acylamidase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "acylamidase inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "acylamide amidohydrolase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "acylamide amidohydrolase inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "amidase (EC 3.5.1.4) inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "amidase (EC 3.5.1.4) inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "amidase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "amidase inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "amidohydrolase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "amidohydrolase inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "deaminase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "deaminase inhibitors") +AnnotationAssertion(Annotation( "ChEBI") "fatty acylamidase inhibitor") +AnnotationAssertion(Annotation( "ChEBI") "fatty acylamidase inhibitors") +AnnotationAssertion( "CHEBI:77941") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "EC 3.5.1.4 (amidase) inhibitor") +SubClassOf( ) + +# Class: (food packaging gas) + +AnnotationAssertion( "A food additive that is a (generally inert) gas which is used to envelop foodstuffs during packing and so protect them from unwanted chemical reactions such as food spoilage or oxidation during subsequent transport and storage. The term includes propellant gases, used to expel foods from a container.") +AnnotationAssertion( "Wikipedia:Packaging_gas") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "food packaging gases") +AnnotationAssertion( "CHEBI:77974") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "food packaging gas") +SubClassOf( ) + +# Class: (fatty acid anion 3:0) + +AnnotationAssertion( "Any saturated fatty acid anion containing 3 carbons. Formed by deprotonation of the carboxylic acid moiety. Major species at pH 7.3.") +AnnotationAssertion( "-1") +AnnotationAssertion( "C3H5O2") +AnnotationAssertion( "73.07060") +AnnotationAssertion( "73.02895") +AnnotationAssertion( "[O-]C([*])=O") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "UniProt") "fatty acid 3:0") +AnnotationAssertion( "CHEBI:78113") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fatty acid anion 3:0") +SubClassOf( ) +SubClassOf( ) + +# Class: (acetone d6) + +AnnotationAssertion( "A deuterated compound that is acetone in which all six hydrogen atoms are replaced by deuterium.") +AnnotationAssertion( "0") +AnnotationAssertion( "C3D6O") +AnnotationAssertion( "InChI=1S/C3H6O/c1-3(2)4/h1-2H3/i1D3,2D3") +AnnotationAssertion( "CSCPPACGZOOCGX-WFGJKAKNSA-N") +AnnotationAssertion( "64.117") +AnnotationAssertion( "64.07953") +AnnotationAssertion( "[2H]C([2H])([2H])C(=O)C([2H])([2H])[2H]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:666-52-4") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:666-52-4") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1702935") +AnnotationAssertion( "Wikipedia:Deuterated_acetone") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "((2)H6)propan-2-one") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChemIDplus") "(2H6)Acetone") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "(CD3)2CO") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "2-Propanone-1,1,1,3,3,3-D6") +AnnotationAssertion(Annotation( "ChemIDplus") "Acetone-d6") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "Perdeuteroacetone") +AnnotationAssertion(Annotation( "ChEBI") "hexadeuteroacetone") +AnnotationAssertion( "CHEBI:78217") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "acetone d6") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (food component) + +AnnotationAssertion( "A physiological role played by any substance that is distributed in foodstuffs. It includes materials derived from plants or animals, such as vitamins or minerals, as well as environmental contaminants.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "dietary component") +AnnotationAssertion(Annotation( "ChEBI") "dietary components") +AnnotationAssertion(Annotation( "ChEBI") "food components") +AnnotationAssertion( "CHEBI:78295") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "food component") +SubClassOf( ) + +# Class: (environmental contaminant) + +AnnotationAssertion( "Any minor or unwanted substance introduced into the environment that can have undesired effects.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "environmental contaminants") +AnnotationAssertion( "CHEBI:78298") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "environmental contaminant") +SubClassOf( ) + +# Class: (refrigerant) + +AnnotationAssertion( "A substance used in a thermodynamic heat pump cycle or refrigeration cycle that undergoes a phase change from a gas to a liquid and back. Refrigerants are used in air-conditioning systems and freezers or refrigerators and are assigned a \"R\" number (by ASHRAE - formerly the American Society of Heating, Refrigerating and Air Conditioning Engineers), which is determined systematically according to their molecular structure.") +AnnotationAssertion( "Wikipedia:Refrigerant") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "refrigerants") +AnnotationAssertion( "CHEBI:78433") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "refrigerant") +SubClassOf( ) + +# Class: (trivalent inorganic anion) + +AnnotationAssertion( "Any inorganic anion with a valency of three.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "trivalent inorganic anions") +AnnotationAssertion( "CHEBI:79387") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "trivalent inorganic anion") +SubClassOf( ) + +# Class: (divalent inorganic anion) + +AnnotationAssertion( "Any inorganic anion with a valency of two.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "divalent inorganic anions") +AnnotationAssertion( "CHEBI:79388") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "divalent inorganic anion") +SubClassOf( ) + +# Class: (monovalent inorganic anion) + +AnnotationAssertion( "Any inorganic anion with a valency of one.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "monovalent inorganic anions") +AnnotationAssertion( "CHEBI:79389") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monovalent inorganic anion") +SubClassOf( ) + +# Class: (aliphatic nitrile) + +AnnotationAssertion( "Any nitrile derived from an aliphatic compound.") +AnnotationAssertion( "0") +AnnotationAssertion( "CNR") +AnnotationAssertion( "26.017") +AnnotationAssertion( "26.00307") +AnnotationAssertion( "[*]C#N") +AnnotationAssertion( "KEGG:C16072") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "UniProt") "an aliphatic nitrile") +AnnotationAssertion( "CHEBI:80291") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "aliphatic nitrile") +SubClassOf( ) + +# Class: (crustacean metabolite) + +AnnotationAssertion( "An animal metabolite produced by arthropods such as crabs, lobsters, crayfish, shrimps and krill.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "crustacean metabolites") +AnnotationAssertion( "CHEBI:83039") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "crustacean metabolite") +SubClassOf( ) + +# Class: (Daphnia magna metabolite) + +AnnotationAssertion( "A Daphnia metabolite produced by the species Daphnia magna.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Daphnia magna metabolites") +AnnotationAssertion( "CHEBI:83056") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "Daphnia magna metabolite") +SubClassOf( ) + +# Class: (Daphnia metabolite) + +AnnotationAssertion( "A crustacean metabolite produced by the genus of small planktonic arthropods, Daphnia") +AnnotationAssertion( "Wikipedia:Daphnia") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "Daphnia metabolites") +AnnotationAssertion( "CHEBI:83057") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "Daphnia metabolite") +SubClassOf( ) + +# Class: ((trifluoromethyl)benzenes) + +AnnotationAssertion( "An organofluorine compound that is (trifluoromethyl)benzene and derivatives arising from substitution of one or more of the phenyl hydrogens.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:83565") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "(trifluoromethyl)benzenes") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (monofluorobenzenes) + +AnnotationAssertion( "Any member of the class of fluorobenzenes containing a mono- or poly-substituted benzene ring carrying a single fluorine substitutent.") +AnnotationAssertion(Annotation( "ChEBI") "monofluorobenzenes") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:83575") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monofluorobenzenes") +SubClassOf( ) + +# Class: (algal metabolite) + +AnnotationAssertion( "Any eukaryotic metabolite produced during a metabolic reaction in algae including unicellular organisms like chlorella and diatoms to multicellular organisms like giant kelps and brown algae.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "algal metabolites") +AnnotationAssertion( "CHEBI:84735") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "algal metabolite") +SubClassOf( ) + +# Class: (tetramethylsilane) + +AnnotationAssertion( "An organosilicon compound that is silane in which the hydrogens have been replaced by methyl groups.") +AnnotationAssertion( "0") +AnnotationAssertion( "C4H12Si") +AnnotationAssertion( "InChI=1S/C4H12Si/c1-5(2,3)4/h1-4H3") +AnnotationAssertion( "CZDYPVPMEAXLPK-UHFFFAOYSA-N") +AnnotationAssertion( "88.22360") +AnnotationAssertion( "88.07083") +AnnotationAssertion( "C[Si](C)(C)C") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:75-76-3") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:75-76-3") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1696908") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "tetramethylsilane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "(CH3)4Si") +AnnotationAssertion(Annotation( "ChEBI") "Me4Si") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "Si(CH3)4") +AnnotationAssertion(Annotation( "ChEBI") "SiMe4") +AnnotationAssertion(Annotation( "SUBMITTER") "TMS") +AnnotationAssertion(Annotation( "ChemIDplus") "Tetramethyl silane") +AnnotationAssertion(Annotation( "ChemIDplus") "Tetramethylsilicane") +AnnotationAssertion( "CHEBI:85361") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tetramethylsilane") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (3-(trimethylsilyl)propane-1-sulfonic acid) + +AnnotationAssertion( "An alkanesulfonic acid that is propanesulfonic acid substituted at position 3 by a trimethylsilyl group.") +AnnotationAssertion( "0") +AnnotationAssertion( "C6H16O3SSi") +AnnotationAssertion( "InChI=1S/C6H16O3SSi/c1-11(2,3)6-4-5-10(7,8)9/h4-6H2,1-3H3,(H,7,8,9)") +AnnotationAssertion( "TVZRAEYQIKYCPH-UHFFFAOYSA-N") +AnnotationAssertion( "196.340") +AnnotationAssertion( "196.05894") +AnnotationAssertion( "C[Si](CCCS(O)(=O)=O)(C)C") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:18173-90-5") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1860132") +AnnotationAssertion( "Wikipedia:DSS_(NMR_standard)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "3-(trimethylsilyl)propane-1-sulfonic acid") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "2,2-dimethyl-2-silapentane-5-sulfonic acid") +AnnotationAssertion(Annotation( "ChEBI") "4,4-dimethyl-4-silapentane-1-sulfonic acid") +AnnotationAssertion(Annotation( "SUBMITTER") "DSS") +AnnotationAssertion( "CHEBI:85362") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "3-(trimethylsilyl)propane-1-sulfonic acid") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (sodium 3-(trimethylsilyl)propionate) + +AnnotationAssertion( "An organic sodium salt composed of sodium and 3-(trimethylsilyl)propionate ions in a 1:1 ratio. It is used as internal reference in the NMR spectrum nuclear magnetic resonance for aqueous solvents (e.g. D2O).") +AnnotationAssertion( "0") +AnnotationAssertion( "C6H13NaO2Si") +AnnotationAssertion( "InChI=1S/C6H14O2Si.Na/c1-9(2,3)5-4-6(7)8;/h4-5H2,1-3H3,(H,7,8);/q;+1/p-1") +AnnotationAssertion( "OIIWPAYIXDCDNL-UHFFFAOYSA-M") +AnnotationAssertion( "168.24150") +AnnotationAssertion( "168.05825") +AnnotationAssertion( "[Na+].C[Si](C)(C)CCC([O-])=O") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:37013-20-0") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:4021529") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "sodium 3-(trimethylsilyl)propanoate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "TMSP") +AnnotationAssertion(Annotation( "SUBMITTER") "TSP") +AnnotationAssertion(Annotation( "ChEBI") "sodium trimethylsilylpropanoate") +AnnotationAssertion(Annotation( "ChEBI") "sodium trimethylsilylpropionate") +AnnotationAssertion( "CHEBI:85363") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sodium 3-(trimethylsilyl)propionate") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (ammonium bromide) + +AnnotationAssertion( "An ammonium salt composed of ammonium and bromide ions in a 1:1 ratio.") +AnnotationAssertion( "0") +AnnotationAssertion( "BrH4N") +AnnotationAssertion( "InChI=1S/BrH.H3N/h1H;1H3") +AnnotationAssertion( "SWLVFNYSXGMGBS-UHFFFAOYSA-N") +AnnotationAssertion( "97.94200") +AnnotationAssertion( "96.95271") +AnnotationAssertion( "[NH4+].[Br-]") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:12124-97-9") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:12124-97-9") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:13202152") +AnnotationAssertion( "Wikipedia:Ammonium_bromide") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "NH4Br") +AnnotationAssertion( "CHEBI:85364") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ammonium bromide") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (deuterated chloroform) + +AnnotationAssertion( "A deuterated compound that is an isotopologue of chloroform in which the hydrogen atom is replaced with deuterium. Commonly used as a solvent in proton NMR spectroscopy.") +AnnotationAssertion( "0") +AnnotationAssertion( "CDCl3") +AnnotationAssertion( "InChI=1S/CHCl3/c2-1(3)4/h1H/i1D") +AnnotationAssertion( "HEDRZPFGACZZDS-MICDWDOJSA-N") +AnnotationAssertion( "120.380") +AnnotationAssertion( "118.92066") +AnnotationAssertion( "[2H]C(Cl)(Cl)Cl") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:865-49-6") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:865-49-6") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:29864274") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:32562503") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1697633") +AnnotationAssertion( "Wikipedia:Deuterated_chloroform") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "trichloro((2)H)methane") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChemIDplus") "(2H)Chloroform") +AnnotationAssertion(Annotation( "SUBMITTER") "CDCl3") +AnnotationAssertion(Annotation( "ChemIDplus") "Chloroform-D") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "Trichloromethane-d") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "Trichloromethane-d1") +AnnotationAssertion(Annotation( "ChEBI") "deuterochloroform") +AnnotationAssertion( "CHEBI:85365") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "deuterated chloroform") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (3-(trimethylsilyl)propionate) + +AnnotationAssertion( "A monocarboxylic acid anion that is the conjugate base of 3-(trimethylsilyl)propionic acid, obtained by deprotonation of the carboxy group.") +AnnotationAssertion( "-1") +AnnotationAssertion( "C6H13O2Si") +AnnotationAssertion( "InChI=1S/C6H14O2Si/c1-9(2,3)5-4-6(7)8/h4-5H2,1-3H3,(H,7,8)/p-1") +AnnotationAssertion( "NONFLFDSOSZQHR-UHFFFAOYSA-M") +AnnotationAssertion( "145.25230") +AnnotationAssertion( "145.06903") +AnnotationAssertion( "C[Si](C)(C)CCC([O-])=O") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:3537181") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "3-(trimethylsilyl)propanoate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "3-trimethylsilylpropanoate") +AnnotationAssertion(Annotation( "ChEBI") "3-trimethylsilylpropionate") +AnnotationAssertion( "CHEBI:85486") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "3-(trimethylsilyl)propionate") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (3-(trimethylsilyl)propionic acid) + +AnnotationAssertion( "An organosilicon compound that is propionic acid substituted at position 3 by a trimethylsilyl group. It is used as internal reference in the NMR spectrum nuclear magnetic resonance for aqueous solvents (e.g. D2O).") +AnnotationAssertion( "0") +AnnotationAssertion( "C6H14O2Si") +AnnotationAssertion( "InChI=1S/C6H14O2Si/c1-9(2,3)5-4-6(7)8/h4-5H2,1-3H3,(H,7,8)") +AnnotationAssertion( "NONFLFDSOSZQHR-UHFFFAOYSA-N") +AnnotationAssertion( "146.25970") +AnnotationAssertion( "146.07631") +AnnotationAssertion( "C[Si](C)(C)CCC(O)=O") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:5683-30-7") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1747261") +AnnotationAssertion( "Wikipedia:Trimethylsilyl_propanoic_acid") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "3-(trimethylsilyl)propanoic acid") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "3-trimethylsilylpropanoic acid") +AnnotationAssertion(Annotation( "ChEBI") "3-trimethylsilylpropionic acid") +AnnotationAssertion(Annotation( "ChEBI") "TMSP") +AnnotationAssertion(Annotation( "ChEBI") "TSP") +AnnotationAssertion( "CHEBI:85487") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "3-(trimethylsilyl)propionic acid") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (antifungal drug) + +AnnotationAssertion( "Any antifungal agent used to prevent or treat fungal infections in humans or animals.") +AnnotationAssertion( "Wikipedia:Antifungal") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "anti-fungal drug") +AnnotationAssertion(Annotation( "ChEBI") "anti-fungal drugs") +AnnotationAssertion(Annotation( "ChEBI") "anti-fungal medication") +AnnotationAssertion(Annotation( "ChEBI") "anti-fungal medications") +AnnotationAssertion(Annotation( "ChEBI") "antifungal drugs") +AnnotationAssertion(Annotation( "ChEBI") "antifungal medication") +AnnotationAssertion(Annotation( "ChEBI") "antifungal medications") +AnnotationAssertion(Annotation( "ChEBI") "pharmaceutical fungicide") +AnnotationAssertion(Annotation( "ChEBI") "pharmaceutical fungicides") +AnnotationAssertion( "CHEBI:86327") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "antifungal drug") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + +# Class: (osmium tetroxide) + +AnnotationAssertion( "An osmium coordination entity consisting of four oxygen atoms bound to a central osmium atom via covalent double bonds.") +AnnotationAssertion( "0") +AnnotationAssertion( "O4Os") +AnnotationAssertion( "InChI=1S/4O.Os") +AnnotationAssertion( "VUVGYHUDAICLFK-UHFFFAOYSA-N") +AnnotationAssertion( "254.222") +AnnotationAssertion( "255.94114") +AnnotationAssertion( "O=[Os](=O)(=O)=O") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:20816-12-0") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:20816-12-0") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:12530969") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:23975065") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:25871651") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:11406415") +AnnotationAssertion( "Wikipedia:Osmium_tetroxide") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "tetraoxoosmium") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChemIDplus") "Osmic acid") +AnnotationAssertion(Annotation( "ChemIDplus") "Osmic acid anhydride") +AnnotationAssertion(Annotation( "ChemIDplus") "Osmium oxide") +AnnotationAssertion(Annotation( "ChemIDplus") "Osmium tetraoxide") +AnnotationAssertion(Annotation( "ChemIDplus") "Perosmic acid anhydride") +AnnotationAssertion(Annotation( "ChemIDplus") "Perosmic oxide") +AnnotationAssertion( "CHEBI:88215") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "osmium tetroxide") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + + +) \ No newline at end of file diff --git a/src/ontology/imports/chebi_terms.txt b/src/ontology/imports/chebi_terms.txt new file mode 100644 index 0000000..6b128c9 --- /dev/null +++ b/src/ontology/imports/chebi_terms.txt @@ -0,0 +1,76 @@ +CHEBI:156265 # methanol-d4 +CHEBI:193038 # acetonitrile-d3 +CHEBI:193039 # benzene-d6 +CHEBI:193040 # N,N-dimethylformamide-d7 +CHEBI:193041 # dimethyl sulfoxide-d6 +CHEBI:193042 # dichloromethane-d2 +CHEBI:193043 # ethanol-d6 +CHEBI:193044 # nitrobenzene-d5 +CHEBI:193045 # nitromethane-d3 +CHEBI:193046 # pyridine-d5 +CHEBI:193047 # oxolane-d8 +CHEBI:193048 # toluene-d8 +CHEBI:193049 # acetic acid-d4 +CHEBI:193050 # trifluoroacetic acid-d1 +CHEBI:193131 # 1,1,2-Trichlorotrifluoroethane +CHEBI:193132 # formic acid-d2 +CHEBI:193133 # methanol-d1 +CHEBI:193134 # 1,1,2,2-tetrachlorethane-d2 +CHEBI:193135 # dimethyl ether-d6 +CHEBI:193136 # fluorosulfonic acid +CHEBI:193146 # antimony pentafluoride +CHEBI:193148 # bromine pentafluoride +CHEBI:41981 # dideuterium oxide +CHEBI:48236 # trichlorofluoromethane +CHEBI:78217 # acetone d6 +CHEBI:85365 # deuterated chloroform +CHEBI:197449 # NMR solvent +CHEBI:36810 # (trifluoromethyl)benzene +CHEBI:38585 # 1,4-difluorobenzene +CHEBI:47032 # 1,4-dioxane +CHEBI:195173 # 1-Propanesulfonic acid, 3-(trimethylsilyl)- (sodium salt) +CHEBI:228806 # 3-(trimethylsilyl)propane-1-sulfonate +CHEBI:85362 # 3-(trimethylsilyl)propane-1-sulfonic acid +CHEBI:85487 # 3-(trimethylsilyl)propionic acid +CHEBI:38472 # acetonitrile +CHEBI:16134 # ammonia +CHEBI:85364 # ammonium bromide +CHEBI:33093 # boron trifluoride +CHEBI:85365 # deuterated chloroform +CHEBI:30236 # difluorine +CHEBI:4613 # dimethyl telluride +CHEBI:229455 # dimethylcadmium +CHEBI:30786 # dimethylmercury +CHEBI:4610 # dimethylselenide +CHEBI:33681 # helium(0) +CHEBI:39429 # hexafluoroacetone +CHEBI:38589 # hexafluorobenzene +CHEBI:29228 # hydrogen fluoride +CHEBI:5115 # monofluorobenzene +CHEBI:34856 # morpholine +CHEBI:77701 # nitromethane +CHEBI:88215 # osmium tetroxide +CHEBI:30251 # pentacarbonyliron +CHEBI:26078 # phosphoric acid +CHEBI:66872 # potassium fluoride +CHEBI:16227 # pyridine +CHEBI:229457 # rhodium acetylacetonate +CHEBI:32130 # silver(1+) nitrate +CHEBI:85363 # sodium 3-(trimethylsilyl)propionate +CHEBI:32954 # sodium acetate +CHEBI:59606 # sodium hexachloroplatinate +CHEBI:63005 # sodium nitrate +CHEBI:63940 # sodium tungstate +CHEBI:30496 # sulfur hexafluoride +CHEBI:55317 # tetramethylammonium bromide +CHEBI:30183 # tetramethyllead +CHEBI:85361 # tetramethylsilane +CHEBI:30420 # tetramethyltin +CHEBI:229458 # titan(III)-nitrate +CHEBI:48236 # trichlorofluoromethane +CHEBI:45892 # trifluoroacetic acid +CHEBI:46324 # trimethyl phosphate +CHEBI:36601 # triphenylphosphane oxide +CHEBI:183318 # triphenylphosphine +CHEBI:229456 # xenon oxytetrafluoride +CHEBI:229454 # yttrium nitrate \ No newline at end of file diff --git a/src/ontology/imports/chmo_import.owl b/src/ontology/imports/chmo_import.owl deleted file mode 100644 index 861c859..0000000 --- a/src/ontology/imports/chmo_import.owl +++ /dev/null @@ -1,96 +0,0 @@ -Prefix(:=) -Prefix(owl:=) -Prefix(rdf:=) -Prefix(xml:=) -Prefix(xsd:=) -Prefix(rdfs:=) - - -Ontology( - -Annotation( ) -Annotation(owl:versionInfo "2024-02-20") - -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty(rdfs:label)) -############################ -# Annotation Properties -############################ - -# Annotation Property: (definition) - -AnnotationAssertion(rdfs:label "definition") - -# Annotation Property: (database_cross_reference) - -AnnotationAssertion(rdfs:label "database_cross_reference") - -# Annotation Property: (has_exact_synonym) - -AnnotationAssertion(rdfs:label "has_exact_synonym") - -# Annotation Property: (has_obo_format_version) - -AnnotationAssertion(rdfs:label "has_obo_format_version") - - - -############################ -# Classes -############################ - -# Class: (continuant) - -AnnotationAssertion( "BFO:0000002") -AnnotationAssertion(rdfs:label "continuant") - -# Class: (process) - -AnnotationAssertion( "BFO:0000015") -AnnotationAssertion(rdfs:label "process") - -# Class: (realizable_entity) - -AnnotationAssertion( "BFO:0000017") -AnnotationAssertion(rdfs:label "realizable_entity") -SubClassOf( ) - -# Class: (quality) - -AnnotationAssertion( "BFO:0000019") -AnnotationAssertion(rdfs:label "quality") -SubClassOf( ) - -# Class: (specifically dependent continuant) - -AnnotationAssertion( "BFO:0000020") -AnnotationAssertion(rdfs:label "specifically dependent continuant") -SubClassOf( ) - -# Class: (generically dependent continuant) - -AnnotationAssertion( "BFO:0000031") -AnnotationAssertion(rdfs:label "generically dependent continuant") -SubClassOf( ) - - -) \ No newline at end of file diff --git a/src/ontology/imports/chmo_terms.txt b/src/ontology/imports/chmo_terms.txt deleted file mode 100644 index 8b13789..0000000 --- a/src/ontology/imports/chmo_terms.txt +++ /dev/null @@ -1 +0,0 @@ - diff --git a/src/ontology/imports/iao_import.owl b/src/ontology/imports/iao_import.owl deleted file mode 100644 index fca91e6..0000000 --- a/src/ontology/imports/iao_import.owl +++ /dev/null @@ -1,811 +0,0 @@ -Prefix(:=) -Prefix(owl:=) -Prefix(rdf:=) -Prefix(xml:=) -Prefix(xsd:=) -Prefix(rdfs:=) - - -Ontology( - -Annotation( ) -Annotation(owl:versionInfo "2024-02-20") - -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty(rdfs:label)) -Declaration(AnnotationProperty()) -############################ -# Annotation Properties -############################ - -# Annotation Property: (definition) - -AnnotationAssertion( "definition"@en) -AnnotationAssertion( ) -AnnotationAssertion( "The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions."@en) -AnnotationAssertion( "2012-04-05: -Barry Smith - -The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. - -Can you fix to something like: - -A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. - -Alan Ruttenberg - -Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. - -On the specifics of the proposed definition: - -We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. - -Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. - -We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. "@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "GROUP:OBI:"@en) -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "definition"@en) - -# Annotation Property: (term editor) - -AnnotationAssertion( "term editor"@en) -AnnotationAssertion( ) -AnnotationAssertion( "Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people"@en) -AnnotationAssertion( "20110707, MC: label update to term editor and definition modified accordingly. See https://github.com/information-artifact-ontology/IAO/issues/115."@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "GROUP:OBI:"@en) -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "term editor"@en) - -# Annotation Property: (definition source) - -AnnotationAssertion( "definition source"@en) -AnnotationAssertion( ) -AnnotationAssertion( "Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w"@en) -AnnotationAssertion( "GROUP:OBI:"@en) -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "definition source"@en) - -# Annotation Property: (has broad synonym) - -AnnotationAssertion( "An alternative label for a class or property which has a more general meaning than the preferred name/primary label.") -AnnotationAssertion( ) -AnnotationAssertion( "https://github.com/information-artifact-ontology/ontology-metadata/issues/18") -AnnotationAssertion(rdfs:label "has broad synonym"@en) -AnnotationAssertion(rdfs:seeAlso "https://github.com/information-artifact-ontology/ontology-metadata/issues/18") - -# Annotation Property: (has exact synonym) - -AnnotationAssertion( "An alternative label for a class or property which has the exact same meaning than the preferred name/primary label.") -AnnotationAssertion( ) -AnnotationAssertion( "https://github.com/information-artifact-ontology/ontology-metadata/issues/20") -AnnotationAssertion(rdfs:label "has exact synonym"@en) -AnnotationAssertion(rdfs:seeAlso "https://github.com/information-artifact-ontology/ontology-metadata/issues/20") - - -############################ -# Object Properties -############################ - -# Object Property: (is about) - -AnnotationAssertion( "This document is about information artifacts and their representations"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A (currently) primitive relation that relates an information artifact to an entity."@en) -AnnotationAssertion( "7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of \"mentions\" relation. Weaken the is_about relationship to be primitive. - -We will try to build it back up by elaborating the various subproperties that are more precisely defined. - -Some currently missing phenomena that should be considered \"about\" are predications - \"The only person who knows the answer is sitting beside me\" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic."@en) -AnnotationAssertion( "person:Alan Ruttenberg"@en) -AnnotationAssertion( "Smith, Ceusters, Ruttenberg, 2000 years of philosophy"@en) -AnnotationAssertion(rdfs:label "is about"@en) -ObjectPropertyDomain( ) - -# Object Property: (characteristic of) - -AnnotationAssertion( "inheres in"@en) -AnnotationAssertion( "this fragility is a characteristic of this vase"@en) -AnnotationAssertion( "this red color is a characteristic of this apple"@en) -AnnotationAssertion( "a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence."@en) -AnnotationAssertion( "inheres_in"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this relation was previously called \"inheres in\", but was changed to be called \"characteristic of\" because BFO2 uses \"inheres in\" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.") -AnnotationAssertion(rdfs:label "characteristic of"@en) -InverseObjectProperties( ) -FunctionalObjectProperty() - -# Object Property: (has characteristic) - -AnnotationAssertion( "bearer of"@en) -AnnotationAssertion( "this apple is bearer of this red color"@en) -AnnotationAssertion( "this vase is bearer of this fragility"@en) -AnnotationAssertion( "Inverse of characteristic_of"@en) -AnnotationAssertion( "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist."@en) -AnnotationAssertion( "bearer_of"@en) -AnnotationAssertion( "is bearer of"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "has characteristic"@en) -InverseFunctionalObjectProperty() -ObjectPropertyRange( ) - -# Object Property: (function of) - -AnnotationAssertion( "this catalysis function is a function of this enzyme"@en) -AnnotationAssertion( "a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence"@en) -AnnotationAssertion( "A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists."@en) -AnnotationAssertion( "function_of"@en) -AnnotationAssertion( "is function of"@en) -AnnotationAssertion(rdfs:comment "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.") -AnnotationAssertion(rdfs:label "function of"@en) -SubObjectPropertyOf( ) -InverseObjectProperties( ) -ObjectPropertyDomain( ) - -# Object Property: (quality of) - -AnnotationAssertion( "this red color is a quality of this apple"@en) -AnnotationAssertion( "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence"@en) -AnnotationAssertion( "A quality inheres in its bearer at all times for which the quality exists."@en) -AnnotationAssertion( "is quality of"@en) -AnnotationAssertion( "quality_of"@en) -AnnotationAssertion(rdfs:comment "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.") -AnnotationAssertion(rdfs:label "quality of"@en) -SubObjectPropertyOf( ) -InverseObjectProperties( ) - -# Object Property: (role of) - -AnnotationAssertion( "this investigator role is a role of this person"@en) -AnnotationAssertion( "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence"@en) -AnnotationAssertion( "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists."@en) -AnnotationAssertion( "is role of"@en) -AnnotationAssertion( "role_of"@en) -AnnotationAssertion(rdfs:comment "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.") -AnnotationAssertion(rdfs:label "role of"@en) -SubObjectPropertyOf( ) -InverseObjectProperties( ) - -# Object Property: (has function) - -AnnotationAssertion( "this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)"@en) -AnnotationAssertion( "a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence"@en) -AnnotationAssertion( "A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists."@en) -AnnotationAssertion( "has_function"@en) -AnnotationAssertion(rdfs:label "has function"@en) -SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (has quality) - -AnnotationAssertion( "this apple has quality this red color"@en) -AnnotationAssertion( "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence"@en) -AnnotationAssertion( "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist."@en) -AnnotationAssertion( "has_quality"@en) -AnnotationAssertion(rdfs:label "has quality"@en) -SubObjectPropertyOf( ) -ObjectPropertyRange( ) - -# Object Property: (has role) - -AnnotationAssertion( "this person has role this investigator role (more colloquially: this person has this role of investigator)"@en) -AnnotationAssertion( "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence"@en) -AnnotationAssertion( "A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists."@en) -AnnotationAssertion( "has_role"@en) -AnnotationAssertion(rdfs:label "has role"@en) -SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (has disposition) - -AnnotationAssertion( "a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence"@en) -AnnotationAssertion(rdfs:label "has disposition"@en) -SubObjectPropertyOf( ) -InverseObjectProperties( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (disposition of) - -AnnotationAssertion(rdfs:comment "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.") -AnnotationAssertion(rdfs:label "disposition of"@en) -SubObjectPropertyOf( ) - - - -############################ -# Classes -############################ - -# Class: (entity) - -AnnotationAssertion( "entity") -AnnotationAssertion( "Entity") -AnnotationAssertion( "Julius Caesar"@en) -AnnotationAssertion( "Verdi’s Requiem"@en) -AnnotationAssertion( "the Second World War"@en) -AnnotationAssertion( "your body mass index"@en) -AnnotationAssertion( "BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81"@en) -AnnotationAssertion(Annotation( ) Annotation(rdfs:comment "per discussion with Barry Smith") Annotation(rdfs:seeAlso ) "Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf"@en) -AnnotationAssertion(Annotation( ) "An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])"@en) -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "entity"@en) - -# Class: (continuant) - -AnnotationAssertion( "continuant") -AnnotationAssertion( "Continuant") -AnnotationAssertion( "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts."@en) -AnnotationAssertion( "BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240"@en) -AnnotationAssertion(Annotation( ) "Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants"@en) -AnnotationAssertion(Annotation( ) "A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])"@en) -AnnotationAssertion(Annotation( ) "if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])"@en) -AnnotationAssertion(Annotation( ) "if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])"@en) -AnnotationAssertion(Annotation( ) "if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])"@en) -AnnotationAssertion(Annotation( ) "(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] ") -AnnotationAssertion(Annotation( ) "(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] ") -AnnotationAssertion(Annotation( ) "(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] ") -AnnotationAssertion(Annotation( ) "(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "continuant"@en) -SubClassOf( ) -DisjointClasses( ) - -# Class: (occurrent) - -AnnotationAssertion( "occurrent") -AnnotationAssertion( "Occurrent") -AnnotationAssertion( "An entity that has temporal parts and that happens, unfolds or develops through time."@en) -AnnotationAssertion( "BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region"@en) -AnnotationAssertion( "BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players."@en) -AnnotationAssertion(Annotation( ) Annotation(rdfs:comment "per discussion with Barry Smith") "Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process."@en) -AnnotationAssertion(Annotation( ) "Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.") -AnnotationAssertion(Annotation( ) "An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])"@en) -AnnotationAssertion(Annotation( ) "Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])"@en) -AnnotationAssertion(Annotation( ) "b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])"@en) -AnnotationAssertion(Annotation( ) "(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] ") -AnnotationAssertion(Annotation( ) "(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "occurrent"@en) -SubClassOf( ) - -# Class: (independent continuant) - -AnnotationAssertion( "ic") -AnnotationAssertion( "IndependentContinuant") -AnnotationAssertion( "a chair"@en) -AnnotationAssertion( "a heart"@en) -AnnotationAssertion( "a leg"@en) -AnnotationAssertion( "a molecule"@en) -AnnotationAssertion( "a spatial region"@en) -AnnotationAssertion( "an atom"@en) -AnnotationAssertion( "an orchestra."@en) -AnnotationAssertion( "an organism"@en) -AnnotationAssertion( "the bottom right portion of a human torso"@en) -AnnotationAssertion( "the interior of your mouth"@en) -AnnotationAssertion(Annotation( ) "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])"@en) -AnnotationAssertion(Annotation( ) "For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])"@en) -AnnotationAssertion(Annotation( ) "For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])"@en) -AnnotationAssertion(Annotation( ) "(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] ") -AnnotationAssertion(Annotation( ) "(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] ") -AnnotationAssertion(Annotation( ) "(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "independent continuant"@en) -SubClassOf( ) -DisjointClasses( ) -DisjointClasses( ) - -# Class: (process) - -AnnotationAssertion( "process") -AnnotationAssertion( "Process") -AnnotationAssertion( "a process of cell-division, \\ a beating of the heart"@en) -AnnotationAssertion( "a process of meiosis"@en) -AnnotationAssertion( "a process of sleeping"@en) -AnnotationAssertion( "the course of a disease"@en) -AnnotationAssertion( "the flight of a bird"@en) -AnnotationAssertion( "the life of an organism"@en) -AnnotationAssertion( "your process of aging."@en) -AnnotationAssertion(Annotation( ) "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])"@en) -AnnotationAssertion( "BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)"@en) -AnnotationAssertion(Annotation( ) "(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "process"@en) -SubClassOf( ) - -# Class: (disposition) - -AnnotationAssertion( "disposition") -AnnotationAssertion( "Disposition") -AnnotationAssertion( "an atom of element X has the disposition to decay to an atom of element Y"@en) -AnnotationAssertion( "certain people have a predisposition to colon cancer"@en) -AnnotationAssertion( "children are innately disposed to categorize objects in certain ways."@en) -AnnotationAssertion( "the cell wall is disposed to filter chemicals in endocytosis and exocytosis"@en) -AnnotationAssertion( "BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type."@en) -AnnotationAssertion(Annotation( ) "b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])"@en) -AnnotationAssertion(Annotation( ) "If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])"@en) -AnnotationAssertion(Annotation( ) "(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002] ") -AnnotationAssertion(Annotation( ) "(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "disposition"@en) -SubClassOf( ) -DisjointClasses( ) - -# Class: (realizable entity) - -AnnotationAssertion( "realizable") -AnnotationAssertion( "RealizableEntity") -AnnotationAssertion( "the disposition of this piece of metal to conduct electricity."@en) -AnnotationAssertion( "the disposition of your blood to coagulate"@en) -AnnotationAssertion( "the function of your reproductive organs"@en) -AnnotationAssertion( "the role of being a doctor"@en) -AnnotationAssertion( "the role of this boundary to delineate where Utah and Colorado meet"@en) -AnnotationAssertion( "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances."@en) -AnnotationAssertion(Annotation( ) "To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])"@en) -AnnotationAssertion(Annotation( ) "All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])"@en) -AnnotationAssertion(Annotation( ) "(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] ") -AnnotationAssertion(Annotation( ) "(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "realizable entity"@en) -SubClassOf( ) -DisjointClasses( ) - -# Class: (quality) - -AnnotationAssertion( "quality") -AnnotationAssertion( "Quality") -AnnotationAssertion( "the ambient temperature of this portion of air"@en) -AnnotationAssertion( "the color of a tomato"@en) -AnnotationAssertion( "the length of the circumference of your waist"@en) -AnnotationAssertion( "the mass of this piece of gold."@en) -AnnotationAssertion( "the shape of your nose"@en) -AnnotationAssertion( "the shape of your nostril"@en) -AnnotationAssertion(Annotation( ) "a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])"@en) -AnnotationAssertion(Annotation( ) "If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])"@en) -AnnotationAssertion(Annotation( ) "(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001] ") -AnnotationAssertion(Annotation( ) "(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "quality"@en) -SubClassOf( ) - -# Class: (specifically dependent continuant) - -AnnotationAssertion( "sdc") -AnnotationAssertion( "SpecificallyDependentContinuant") -AnnotationAssertion( "Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key"@en) -AnnotationAssertion( "of one-sided specifically dependent continuants: the mass of this tomato"@en) -AnnotationAssertion( "of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates."@en) -AnnotationAssertion( "the disposition of this fish to decay"@en) -AnnotationAssertion( "the function of this heart: to pump blood"@en) -AnnotationAssertion( "the mutual dependence of proton donors and acceptors in chemical reactions [79"@en) -AnnotationAssertion( "the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction"@en) -AnnotationAssertion( "the pink color of a medium rare piece of grilled filet mignon at its center"@en) -AnnotationAssertion( "the role of being a doctor"@en) -AnnotationAssertion( "the shape of this hole."@en) -AnnotationAssertion( "the smell of this portion of mozzarella"@en) -AnnotationAssertion(Annotation( ) "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])"@en) -AnnotationAssertion(Annotation( ) Annotation(rdfs:comment "per discussion with Barry Smith") "Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc."@en) -AnnotationAssertion(Annotation( ) "(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "specifically dependent continuant"@en) -SubClassOf( ) -DisjointClasses( ) - -# Class: (role) - -AnnotationAssertion( "role") -AnnotationAssertion( "Role") -AnnotationAssertion( "John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married."@en) -AnnotationAssertion( "the priest role"@en) -AnnotationAssertion( "the role of a boundary to demarcate two neighboring administrative territories"@en) -AnnotationAssertion( "the role of a building in serving as a military target"@en) -AnnotationAssertion( "the role of a stone in marking a property boundary"@en) -AnnotationAssertion( "the role of subject in a clinical trial"@en) -AnnotationAssertion( "the student role"@en) -AnnotationAssertion( "A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts."@en) -AnnotationAssertion( "BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives."@en) -AnnotationAssertion(Annotation( ) "b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])"@en) -AnnotationAssertion(Annotation( ) "(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "role"@en) -SubClassOf( ) - -# Class: (object) - -AnnotationAssertion( "object") -AnnotationAssertion( "Object") -AnnotationAssertion( "atom"@en) -AnnotationAssertion( "cell"@en) -AnnotationAssertion( "cells and organisms"@en) -AnnotationAssertion( "engineered artifacts"@en) -AnnotationAssertion( "grain of sand"@en) -AnnotationAssertion( "molecule"@en) -AnnotationAssertion( "organelle"@en) -AnnotationAssertion( "organism"@en) -AnnotationAssertion( "planet"@en) -AnnotationAssertion( "solid portions of matter"@en) -AnnotationAssertion( "star"@en) -AnnotationAssertion( "BFO 2 Reference: BFO rests on the presupposition that at multiple micro-, meso- and macroscopic scales reality exhibits certain stable, spatially separated or separable material units, combined or combinable into aggregates of various sorts (for example organisms into what are called ‘populations’). Such units play a central role in almost all domains of natural science from particle physics to cosmology. Many scientific laws govern the units in question, employing general terms (such as ‘molecule’ or ‘planet’) referring to the types and subtypes of units, and also to the types and subtypes of the processes through which such units develop and interact. The division of reality into such natural units is at the heart of biological science, as also is the fact that these units may form higher-level units (as cells form multicellular organisms) and that they may also form aggregates of units, for example as cells form portions of tissue and organs form families, herds, breeds, species, and so on. At the same time, the division of certain portions of reality into engineered units (manufactured artifacts) is the basis of modern industrial technology, which rests on the distributed mass production of engineered parts through division of labor and on their assembly into larger, compound units such as cars and laptops. The division of portions of reality into units is one starting point for the phenomenon of counting."@en) -AnnotationAssertion( "BFO 2 Reference: Each object is such that there are entities of which we can assert unproblematically that they lie in its interior, and other entities of which we can assert unproblematically that they lie in its exterior. This may not be so for entities lying at or near the boundary between the interior and exterior. This means that two objects – for example the two cells depicted in Figure 3 – may be such that there are material entities crossing their boundaries which belong determinately to neither cell. Something similar obtains in certain cases of conjoined twins (see below)."@en) -AnnotationAssertion( "BFO 2 Reference: To say that b is causally unified means: b is a material entity which is such that its material parts are tied together in such a way that, in environments typical for entities of the type in question,if c, a continuant part of b that is in the interior of b at t, is larger than a certain threshold size (which will be determined differently from case to case, depending on factors such as porosity of external cover) and is moved in space to be at t at a location on the exterior of the spatial region that had been occupied by b at t, then either b’s other parts will be moved in coordinated fashion or b will be damaged (be affected, for example, by breakage or tearing) in the interval between t and t.causal changes in one part of b can have consequences for other parts of b without the mediation of any entity that lies on the exterior of b. Material entities with no proper material parts would satisfy these conditions trivially. Candidate examples of types of causal unity for material entities of more complex sorts are as follows (this is not intended to be an exhaustive list):CU1: Causal unity via physical coveringHere the parts in the interior of the unified entity are combined together causally through a common membrane or other physical covering\\. The latter points outwards toward and may serve a protective function in relation to what lies on the exterior of the entity [13, 47"@en) -AnnotationAssertion( "BFO 2 Reference: an object is a maximal causally unified material entity"@en) -AnnotationAssertion( "BFO 2 Reference: ‘objects’ are sometimes referred to as ‘grains’ [74"@en) -AnnotationAssertion(Annotation( ) "b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001])"@en) -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "object"@en) -SubClassOf( ) - -# Class: (generically dependent continuant) - -AnnotationAssertion( "gdc") -AnnotationAssertion( "GenericallyDependentContinuant") -AnnotationAssertion( "The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity."@en) -AnnotationAssertion( "the pdf file on your laptop, the pdf file that is a copy thereof on my laptop"@en) -AnnotationAssertion( "the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule."@en) -AnnotationAssertion(Annotation( ) "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])"@en) -AnnotationAssertion(Annotation( ) "(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "generically dependent continuant"@en) -SubClassOf( ) - -# Class: (function) - -AnnotationAssertion( "function") -AnnotationAssertion( "Function") -AnnotationAssertion( "the function of a hammer to drive in nails"@en) -AnnotationAssertion( "the function of a heart pacemaker to regulate the beating of a heart through electricity"@en) -AnnotationAssertion( "the function of amylase in saliva to break down starch into sugar"@en) -AnnotationAssertion( "BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc."@en) -AnnotationAssertion(Annotation( ) "A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])"@en) -AnnotationAssertion(Annotation( ) "(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "function"@en) -SubClassOf( ) - -# Class: (material entity) - -AnnotationAssertion( "material") -AnnotationAssertion( "MaterialEntity") -AnnotationAssertion( "a flame"@en) -AnnotationAssertion( "a forest fire"@en) -AnnotationAssertion( "a human being"@en) -AnnotationAssertion( "a hurricane"@en) -AnnotationAssertion( "a photon"@en) -AnnotationAssertion( "a puff of smoke"@en) -AnnotationAssertion( "a sea wave"@en) -AnnotationAssertion( "a tornado"@en) -AnnotationAssertion( "an aggregate of human beings."@en) -AnnotationAssertion( "an energy wave"@en) -AnnotationAssertion( "an epidemic"@en) -AnnotationAssertion( "the undetached arm of a human being"@en) -AnnotationAssertion( "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time."@en) -AnnotationAssertion( "BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60"@en) -AnnotationAssertion( "BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity."@en) -AnnotationAssertion( "BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here."@en) -AnnotationAssertion(Annotation( ) "A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])"@en) -AnnotationAssertion(Annotation( ) "Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])"@en) -AnnotationAssertion(Annotation( ) "every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])"@en) -AnnotationAssertion(Annotation( ) "(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] ") -AnnotationAssertion(Annotation( ) "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] ") -AnnotationAssertion(Annotation( ) "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "material entity"@en) -SubClassOf( ) - -# Class: (data item) - -AnnotationAssertion( "data item"@en) -AnnotationAssertion( "Data items include counts of things, analyte concentrations, and statistical summaries."@en) -AnnotationAssertion( ) -AnnotationAssertion( "An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements."@en) -AnnotationAssertion( "2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers."@en) -AnnotationAssertion( "2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum."@en) -AnnotationAssertion( "2009-03-16: removed datum as alternative term as datum specifically refers to singular form, and is thus not an exact synonym."@en) -AnnotationAssertion( "JAR: datum -- well, this will be very tricky to define, but maybe some -information-like stuff that might be put into a computer and that is -meant, by someone, to denote and/or to be interpreted by some -process... I would include lists, tables, sentences... I think I might -defer to Barry, or to Brian Cantwell Smith - -JAR: A data item is an approximately justified approximately true approximate belief"@en) -AnnotationAssertion( "2014-03-31: See discussion at http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/") -AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) -AnnotationAssertion( "PERSON: Chris Stoeckert"@en) -AnnotationAssertion( "PERSON: Jonathan Rees"@en) -AnnotationAssertion( "data"@en) -AnnotationAssertion(rdfs:label "data item"@en) -SubClassOf( ) - -# Class: (information content entity) - -AnnotationAssertion( "information content entity"@en) -AnnotationAssertion( "Examples of information content entites include journal articles, data, graphical layouts, and graphs."@en) -AnnotationAssertion( ) -AnnotationAssertion( "A generically dependent continuant that is about some thing."@en) -AnnotationAssertion( "2014-03-10: The use of \"thing\" is intended to be general enough to include universals and configurations (see https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ)."@en) -AnnotationAssertion( "information_content_entity 'is_encoded_in' some digital_entity in obi before split (040907). information_content_entity 'is_encoded_in' some physical_document in obi before split (040907). - -Previous. An information content entity is a non-realizable information entity that 'is encoded in' some digital or physical entity."@en) -AnnotationAssertion( "PERSON: Chris Stoeckert"@en) -AnnotationAssertion( "OBI_0000142"@en) -AnnotationAssertion(rdfs:label "information content entity"@en) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (curation status specification) - -AnnotationAssertion( "curation status specification"@en) -AnnotationAssertion( ) -AnnotationAssertion( "The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value."@en) -AnnotationAssertion( "Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)"@en) -AnnotationAssertion( "PERSON:Bill Bug"@en) -AnnotationAssertion( "GROUP:OBI:"@en) -AnnotationAssertion( "OBI_0000266"@en) -AnnotationAssertion(rdfs:label "curation status specification"@en) -EquivalentClasses( ObjectOneOf( )) -SubClassOf( ) - -# Class: (data about an ontology part) - -AnnotationAssertion( "data about an ontology part"@en) -AnnotationAssertion( "Data about an ontology part is a data item about a part of an ontology, for example a term"@en) -AnnotationAssertion( "Person:Alan Ruttenberg"@en) -AnnotationAssertion(rdfs:label "data about an ontology part"@en) -SubClassOf( ) - -# Class: (obsolescence reason specification) - -AnnotationAssertion( "obsolescence reason specification"@en) -AnnotationAssertion( ) -AnnotationAssertion( "The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value."@en) -AnnotationAssertion( "The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology."@en) -AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) -AnnotationAssertion( "PERSON: Melanie Courtot"@en) -AnnotationAssertion(rdfs:label "obsolescence reason specification"@en) -EquivalentClasses( ObjectOneOf( )) -SubClassOf( ) - -# Class: (denotator type) - -AnnotationAssertion( "denotator type"@en) -AnnotationAssertion( "The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are \"natural kinds\" and the latter arbitrary collections of entities."@en) -AnnotationAssertion( "A denotator type indicates how a term should be interpreted from an ontological perspective."@en) -AnnotationAssertion( "Alan Ruttenberg"@en) -AnnotationAssertion( "Barry Smith, Werner Ceusters"@en) -AnnotationAssertion(rdfs:label "denotator type"@en) -EquivalentClasses( ObjectOneOf( )) -SubClassOf( ) - - -############################ -# Named Individuals -############################ - -# Individual: (example to be eventually removed) - -AnnotationAssertion( "example to be eventually removed"@en) -AnnotationAssertion(rdfs:label "example to be eventually removed"@en) -ClassAssertion( ) - -# Individual: (failed exploratory term) - -AnnotationAssertion( "failed exploratory term"@en) -AnnotationAssertion( "The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job"@en) -AnnotationAssertion( "Person:Alan Ruttenberg"@en) -AnnotationAssertion(rdfs:label "failed exploratory term"@en) -ClassAssertion( ) - -# Individual: (metadata complete) - -AnnotationAssertion( "metadata complete"@en) -AnnotationAssertion( "Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete."@en) -AnnotationAssertion(rdfs:label "metadata complete"@en) -ClassAssertion( ) - -# Individual: (organizational term) - -AnnotationAssertion( "organizational term"@en) -AnnotationAssertion( "Term created to ease viewing/sort terms for development purpose, and will not be included in a release"@en) -AnnotationAssertion(rdfs:label "organizational term"@en) -ClassAssertion( ) - -# Individual: (ready for release) - -AnnotationAssertion( "ready for release"@en) -AnnotationAssertion( "Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking \"ready_for_release\" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed \"ready_for_release\" will also derived from a chain of ancestor classes that are also \"ready_for_release.\""@en) -AnnotationAssertion(rdfs:label "ready for release"@en) -ClassAssertion( ) - -# Individual: (metadata incomplete) - -AnnotationAssertion( "metadata incomplete"@en) -AnnotationAssertion( "Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors."@en) -AnnotationAssertion(rdfs:label "metadata incomplete"@en) -ClassAssertion( ) - -# Individual: (uncurated) - -AnnotationAssertion( "uncurated"@en) -AnnotationAssertion( "Nothing done yet beyond assigning a unique class ID and proposing a preferred term."@en) -AnnotationAssertion(rdfs:label "uncurated"@en) -ClassAssertion( ) - -# Individual: (pending final vetting) - -AnnotationAssertion( "pending final vetting"@en) -AnnotationAssertion( "All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor."@en) -AnnotationAssertion(rdfs:label "pending final vetting"@en) -ClassAssertion( ) - -# Individual: (placeholder removed) - -AnnotationAssertion( "placeholder removed"@en) -AnnotationAssertion(rdfs:label "placeholder removed"@en) -ClassAssertion( ) - -# Individual: (terms merged) - -AnnotationAssertion( "terms merged"@en) -AnnotationAssertion( "An editor note should explain what were the merged terms and the reason for the merge."@en) -AnnotationAssertion(rdfs:label "terms merged"@en) -ClassAssertion( ) - -# Individual: (term imported) - -AnnotationAssertion( "term imported"@en) -AnnotationAssertion( "This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use."@en) -AnnotationAssertion(rdfs:label "term imported"@en) -ClassAssertion( ) - -# Individual: (term split) - -AnnotationAssertion( "term split"@en) -AnnotationAssertion( "This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created."@en) -AnnotationAssertion(rdfs:label "term split"@en) -ClassAssertion( ) - -# Individual: (universal) - -AnnotationAssertion( "universal"@en) -AnnotationAssertion( "Hard to give a definition for. Intuitively a \"natural kind\" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents."@en) -AnnotationAssertion( "Alan Ruttenberg"@en) -AnnotationAssertion( "A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf"@en) -AnnotationAssertion(rdfs:label "universal"@en) -ClassAssertion( ) - -# Individual: (defined class) - -AnnotationAssertion( "defined class"@en) -AnnotationAssertion( "A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal"@en) -AnnotationAssertion( "\"definitions\", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal."@en) -AnnotationAssertion( "Alan Ruttenberg"@en) -AnnotationAssertion(rdfs:label "defined class"@en) -ClassAssertion( ) - -# Individual: (named class expression) - -AnnotationAssertion( "named class expression"@en) -AnnotationAssertion( "A named class expression is a logical expression that is given a name. The name can be used in place of the expression."@en) -AnnotationAssertion( "named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions"@en) -AnnotationAssertion( "Alan Ruttenberg"@en) -AnnotationAssertion(rdfs:label "named class expression"@en) -ClassAssertion( ) - -# Individual: (to be replaced with external ontology term) - -AnnotationAssertion( "to be replaced with external ontology term"@en) -AnnotationAssertion( "Terms with this status should eventually replaced with a term from another ontology."@en) -AnnotationAssertion( "Alan Ruttenberg"@en) -AnnotationAssertion( "group:OBI"@en) -AnnotationAssertion(rdfs:label "to be replaced with external ontology term"@en) -ClassAssertion( ) - -# Individual: (requires discussion) - -AnnotationAssertion( "requires discussion"@en) -AnnotationAssertion( "A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues."@en) -AnnotationAssertion( "Alan Ruttenberg"@en) -AnnotationAssertion( "group:OBI"@en) -AnnotationAssertion(rdfs:label "requires discussion"@en) -ClassAssertion( ) - -# Individual: (out of scope) - -AnnotationAssertion( "The term was added to the ontology on the assumption it was in scope, but it turned out later that it was not."@en) -AnnotationAssertion( "This obsolesence reason should be used conservatively. Typical valid examples are: un-necessary grouping classes in disease ontologies, a phenotype term added on the assumption it was a disease."@en) -AnnotationAssertion( ) -AnnotationAssertion( "https://github.com/information-artifact-ontology/ontology-metadata/issues/77") -AnnotationAssertion( "https://orcid.org/0000-0001-5208-3432") -AnnotationAssertion(rdfs:label "out of scope") -ClassAssertion( ) - - -DifferentIndividuals( ) -DifferentIndividuals( ) -DLSafeRule(Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -) \ No newline at end of file diff --git a/src/ontology/imports/iao_terms.txt b/src/ontology/imports/iao_terms.txt deleted file mode 100644 index 8b13789..0000000 --- a/src/ontology/imports/iao_terms.txt +++ /dev/null @@ -1 +0,0 @@ - diff --git a/src/ontology/imports/obi_import.owl b/src/ontology/imports/obi_import.owl deleted file mode 100644 index 45c45cb..0000000 --- a/src/ontology/imports/obi_import.owl +++ /dev/null @@ -1,5689 +0,0 @@ -Prefix(:=) -Prefix(owl:=) -Prefix(rdf:=) -Prefix(xml:=) -Prefix(xsd:=) -Prefix(rdfs:=) - - -Ontology( - -Annotation( ) -Annotation(owl:versionInfo "2024-02-20") - -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) 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-Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) 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-Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(NamedIndividual()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty(rdfs:label)) -Declaration(AnnotationProperty()) -Declaration(Datatype(xsd:date)) -############################ -# Annotation Properties -############################ - -# Annotation Property: (textual definition) - -AnnotationAssertion( "definition"@en) -AnnotationAssertion( "definition") -AnnotationAssertion( "textual definition") -AnnotationAssertion( ) -AnnotationAssertion( "The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions."@en) -AnnotationAssertion( "The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions."@en) -AnnotationAssertion( "2012-04-05: -Barry Smith - -The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. - -Can you fix to something like: - -A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. - -Alan Ruttenberg - -Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. - -On the specifics of the proposed definition: - -We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. - -Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. - -We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. "@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "GROUP:OBI:"@en) -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "definition"@en) -AnnotationAssertion(rdfs:label "definition") -AnnotationAssertion(rdfs:label "textual definition") - -# Annotation Property: (term editor) - -AnnotationAssertion( "term editor"@en) -AnnotationAssertion( ) -AnnotationAssertion( "Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people"@en) -AnnotationAssertion( "20110707, MC: label update to term editor and definition modified accordingly. See https://github.com/information-artifact-ontology/IAO/issues/115."@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "GROUP:OBI:"@en) -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "term editor"@en) - -# Annotation Property: (definition source) - -AnnotationAssertion( "definition source"@en) -AnnotationAssertion( ) -AnnotationAssertion( "Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w"@en) -AnnotationAssertion( "GROUP:OBI:"@en) -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "definition source"@en) - -# Annotation Property: (Contributor) - -AnnotationAssertion( "Examples of a Contributor include a person, an - organisation, or a service. Typically, the name of a - Contributor should be used to indicate the entity."@en-us) -AnnotationAssertion(rdfs:comment "An entity responsible for making contributions to the - content of the resource."@en-us) -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "Contributor"@en-us) -AnnotationAssertion(rdfs:label "Contributor") - -# Annotation Property: (Coverage) - -AnnotationAssertion( "Coverage will typically include spatial location (a place name - or geographic coordinates), temporal period (a period label, - date, or date range) or jurisdiction (such as a named - administrative entity). - Recommended best practice is to select a value from a - controlled vocabulary (for example, the Thesaurus of Geographic - Names [TGN]) and that, where appropriate, named places or time - periods be used in preference to numeric identifiers such as - sets of coordinates or date ranges."@en-us) -AnnotationAssertion(rdfs:comment "The extent or scope of the content of the resource."@en-us) -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "Coverage"@en-us) -AnnotationAssertion(rdfs:label "Coverage") - -# Annotation Property: (Source) - -AnnotationAssertion( "The present resource may be derived from the Source resource - in whole or in part. Recommended best practice is to reference - the resource by means of a string or number conforming to a - formal identification system."@en-us) -AnnotationAssertion(rdfs:comment "A reference to a resource from which the present resource - is derived."@en-us) -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "Source"@en-us) -AnnotationAssertion(rdfs:label "Source") - -# Annotation Property: () - -AnnotationAssertion( "Mark Miller") -AnnotationAssertion( "2018-05-11T13:47:29Z"^^xsd:dateTime) - -# Annotation Property: rdfs:label (label) - -AnnotationAssertion( rdfs:label "label") -AnnotationAssertion(rdfs:label rdfs:label "label") - - -############################ -# Object Properties -############################ - -# Object Property: (part of) - -AnnotationAssertion( "is part of"@en) -AnnotationAssertion( "my brain is part of my body (continuant parthood, two material entities)"@en) -AnnotationAssertion( "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)"@en) -AnnotationAssertion( "this day is part of this year (occurrent parthood)"@en) -AnnotationAssertion( "a core relation that holds between a part and its whole"@en) -AnnotationAssertion( "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other."@en) -AnnotationAssertion( "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime"@en) -AnnotationAssertion( "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) - -A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'."@en) -AnnotationAssertion( "part_of"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "part of"@en) -AnnotationAssertion(rdfs:seeAlso "http://www.obofoundry.org/ro/#OBO_REL:part_of") -InverseObjectProperties( ) -TransitiveObjectProperty() - -# Object Property: (has part) - -AnnotationAssertion( "has part"@en) -AnnotationAssertion( "my body has part my brain (continuant parthood, two material entities)"@en) -AnnotationAssertion( "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)"@en) -AnnotationAssertion( "this year has part this day (occurrent parthood)"@en) -AnnotationAssertion( "a core relation that holds between a whole and its part"@en) -AnnotationAssertion( "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part."@en) -AnnotationAssertion( "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime"@en) -AnnotationAssertion( "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) - -A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'."@en) -AnnotationAssertion( "has_part"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "has part"@en) -TransitiveObjectProperty() - -# Object Property: (realized in) - -AnnotationAssertion( "realized in"@en) -AnnotationAssertion( "this disease is realized in this disease course"@en) -AnnotationAssertion( "this fragility is realized in this shattering"@en) -AnnotationAssertion( "this investigator role is realized in this investigation"@en) -AnnotationAssertion( "is realized by"@en) -AnnotationAssertion( "realized_in"@en) -AnnotationAssertion( "[copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])"@en) -AnnotationAssertion(rdfs:comment "Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "realized in"@en) -InverseObjectProperties( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (realizes) - -AnnotationAssertion( "realizes"@en) -AnnotationAssertion( "this disease course realizes this disease"@en) -AnnotationAssertion( "this investigation realizes this investigator role"@en) -AnnotationAssertion( "this shattering realizes this fragility"@en) -AnnotationAssertion( "to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])"@en) -AnnotationAssertion(rdfs:comment "Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "realizes"@en) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (is about) - -AnnotationAssertion( "This document is about information artifacts and their representations"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A (currently) primitive relation that relates an information artifact to an entity."@en) -AnnotationAssertion( "7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of \"mentions\" relation. Weaken the is_about relationship to be primitive. - -We will try to build it back up by elaborating the various subproperties that are more precisely defined. - -Some currently missing phenomena that should be considered \"about\" are predications - \"The only person who knows the answer is sitting beside me\" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic."@en) -AnnotationAssertion( "person:Alan Ruttenberg"@en) -AnnotationAssertion( "Smith, Ceusters, Ruttenberg, 2000 years of philosophy"@en) -AnnotationAssertion(rdfs:label "is about"@en) -ObjectPropertyDomain( ) - -# Object Property: (has_specified_input) - -AnnotationAssertion( "has_specified_input"@en) -AnnotationAssertion( "has_specified_input") -AnnotationAssertion( "see is_input_of example_of_usage"@en) -AnnotationAssertion( ) -AnnotationAssertion( "The inverse property of is_specified_input_of"@en) -AnnotationAssertion( "8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works.") -AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) -AnnotationAssertion( "PERSON: Bjoern Peters") -AnnotationAssertion( "PERSON: Larry Hunter") -AnnotationAssertion( "PERSON: Melanie Coutot") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "has_specified_input"@en) -EquivalentObjectProperties( ObjectInverseOf()) -SubObjectPropertyOf( ) -InverseObjectProperties( ) -ObjectPropertyDomain( ) - -# Object Property: (is_specified_input_of) - -AnnotationAssertion( "is_specified_input_of") -AnnotationAssertion( "some Autologous EBV(Epstein-Barr virus)-transformed B-LCL (B lymphocyte cell line) is_input_for instance of Chromum Release Assay described at https://wiki.cbil.upenn.edu/obiwiki/index.php/Chromium_Release_assay"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of."@en) -AnnotationAssertion( "Alan Ruttenberg"@en) -AnnotationAssertion( "PERSON:Bjoern Peters") -AnnotationAssertion(rdfs:label "is_specified_input_of"@en) -SubObjectPropertyOf( ) -ObjectPropertyRange( ) - -# Object Property: (has_specified_output) - -AnnotationAssertion( "has_specified_output"@en) -AnnotationAssertion( "has_specified_output") -AnnotationAssertion( ) -AnnotationAssertion( "The inverse property of is_specified_output_of"@en) -AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) -AnnotationAssertion( "PERSON: Bjoern Peters") -AnnotationAssertion( "PERSON: Larry Hunter") -AnnotationAssertion( "PERSON: Melanie Courtot") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "has_specified_output"@en) -EquivalentObjectProperties( ObjectInverseOf()) -SubObjectPropertyOf( ) -InverseObjectProperties( ) -ObjectPropertyDomain( ) - -# Object Property: (is_specified_output_of) - -AnnotationAssertion( "is_specified_output_of"@en) -AnnotationAssertion( "is_specified_output_of") -AnnotationAssertion( ) -AnnotationAssertion( "A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of."@en) -AnnotationAssertion( "Alan Ruttenberg"@en) -AnnotationAssertion( "PERSON:Bjoern Peters") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "is_specified_output_of"@en) -SubObjectPropertyOf( ) -ObjectPropertyRange( ) - -# Object Property: (achieves_planned_objective) - -AnnotationAssertion( "achieves_planned_objective") -AnnotationAssertion( "A cell sorting process achieves the objective specification 'material separation objective'") -AnnotationAssertion( ) -AnnotationAssertion( "This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process.") -AnnotationAssertion( "BP, AR, PPPB branch") -AnnotationAssertion( "PPPB branch derived") -AnnotationAssertion( "modified according to email thread from 1/23/09 in accordince with DT and PPPB branch") -AnnotationAssertion(rdfs:label "achieves_planned_objective") -InverseObjectProperties( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (objective_achieved_by) - -AnnotationAssertion( "objective_achieved_by") -AnnotationAssertion( ) -AnnotationAssertion( "This relation obtains between an objective specification and a planned process when the criteria specified in the objective specification are met at the end of the planned process.") -AnnotationAssertion( "OBI") -AnnotationAssertion( "OBI") -AnnotationAssertion(rdfs:label "objective_achieved_by") -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (inheres in) - -AnnotationAssertion( "inheres in"@en) -AnnotationAssertion( "this fragility inheres in this vase"@en) -AnnotationAssertion( "this red color inheres in this apple"@en) -AnnotationAssertion( "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence"@en) -AnnotationAssertion( "A dependent inheres in its bearer at all times for which the dependent exists."@en) -AnnotationAssertion( "inheres_in"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "inheres in"@en) -InverseObjectProperties( ) - -# Object Property: (bearer of) - -AnnotationAssertion( "bearer of"@en) -AnnotationAssertion( "this apple is bearer of this red color"@en) -AnnotationAssertion( "this vase is bearer of this fragility"@en) -AnnotationAssertion( "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence"@en) -AnnotationAssertion( "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist."@en) -AnnotationAssertion( "bearer_of"@en) -AnnotationAssertion( "is bearer of"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "bearer of"@en) -ObjectPropertyRange( ) - -# Object Property: (participates in) - -AnnotationAssertion( "participates in"@en) -AnnotationAssertion( "this blood clot participates in this blood coagulation"@en) -AnnotationAssertion( "this input material (or this output material) participates in this process"@en) -AnnotationAssertion( "this investigator participates in this investigation"@en) -AnnotationAssertion( "a relation between a continuant and a process, in which the continuant is somehow involved in the process"@en) -AnnotationAssertion( "participates_in"@en) -AnnotationAssertion(rdfs:label "participates in"@en) -InverseObjectProperties( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (has participant) - -AnnotationAssertion( "has participant"@en) -AnnotationAssertion( "this blood coagulation has participant this blood clot"@en) -AnnotationAssertion( "this investigation has participant this investigator"@en) -AnnotationAssertion( "this process has participant this input material (or this output material)"@en) -AnnotationAssertion( "a relation between a process and a continuant, in which the continuant is somehow involved in the process"@en) -AnnotationAssertion( "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time."@en) -AnnotationAssertion( "has_participant"@en) -AnnotationAssertion( "http://www.obofoundry.org/ro/#OBO_REL:has_participant") -AnnotationAssertion(rdfs:label "has participant"@en) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (is concretized as) - -AnnotationAssertion( "A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant)."@en) -AnnotationAssertion( "An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process)."@en) -AnnotationAssertion( "A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants."@en) -AnnotationAssertion(rdfs:label "is concretized as"@en) -InverseObjectProperties( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (concretizes) - -AnnotationAssertion( "A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant)."@en) -AnnotationAssertion( "An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process)."@en) -AnnotationAssertion( "A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant."@en) -AnnotationAssertion(rdfs:label "concretizes"@en) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (role of) - -AnnotationAssertion( "this investigator role is a role of this person"@en) -AnnotationAssertion( "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence"@en) -AnnotationAssertion( "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists."@en) -AnnotationAssertion( "is role of"@en) -AnnotationAssertion( "role_of"@en) -AnnotationAssertion(rdfs:label "role of"@en) -SubObjectPropertyOf( ) -InverseObjectProperties( ) - -# Object Property: (has role) - -AnnotationAssertion( "this person has role this investigator role (more colloquially: this person has this role of investigator)"@en) -AnnotationAssertion( "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence"@en) -AnnotationAssertion( "A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists."@en) -AnnotationAssertion( "has_role"@en) -AnnotationAssertion(rdfs:label "has role"@en) -SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (member of) - -AnnotationAssertion( "An organism that is a member of a population of organisms") -AnnotationAssertion( "is member of is a mereological relation between a item and a collection.") -AnnotationAssertion( "is member of") -AnnotationAssertion( "member part of") -AnnotationAssertion( "SIO") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "member of"@en) -SubObjectPropertyOf( ) -InverseObjectProperties( ) - -# Object Property: (has member) - -AnnotationAssertion( "has member is a mereological relation between a collection and an item.") -AnnotationAssertion( "SIO") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "has member"@en) -SubObjectPropertyOf( ) -IrreflexiveObjectProperty() - - - -############################ -# Classes -############################ - -# Class: (software development) - -AnnotationAssertion( "A planned process that has specified output a software product and that involves the creation of source code."@en) -AnnotationAssertion( "Mathias Brochhausen"@en) -AnnotationAssertion( "William R. Hogan"@en) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Software_development") -AnnotationAssertion( "A planned process resulting in a software product involving the creation of source code."@en) -AnnotationAssertion(rdfs:label "software development"@en) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectUnionOf( )))) -SubClassOf( ) - -# Class: (dataset creating) - -AnnotationAssertion( "creating a data set"@en) -AnnotationAssertion( "A planned process that has a data set as its specified output."@en) -AnnotationAssertion( "William R. Hogan"@en) -AnnotationAssertion( "data set creation"@en) -AnnotationAssertion( "dataset creation"@en) -AnnotationAssertion(rdfs:label "dataset creating"@en) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (entity) - -AnnotationAssertion( "entity") -AnnotationAssertion( "Entity") -AnnotationAssertion( "Julius Caesar"@en) -AnnotationAssertion( "Verdi’s Requiem"@en) -AnnotationAssertion( "the Second World War"@en) -AnnotationAssertion( "your body mass index"@en) -AnnotationAssertion( "BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81"@en) -AnnotationAssertion(Annotation( ) Annotation(rdfs:comment "per discussion with Barry Smith") Annotation(rdfs:seeAlso ) "Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf"@en) -AnnotationAssertion(Annotation( ) "An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])"@en) -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "entity"@en) - -# Class: (continuant) - -AnnotationAssertion( "continuant") -AnnotationAssertion( "Continuant") -AnnotationAssertion( "continuant"@en) -AnnotationAssertion( "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts."@en) -AnnotationAssertion( "BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240"@en) -AnnotationAssertion(Annotation( ) "Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants"@en) -AnnotationAssertion( ) -AnnotationAssertion(Annotation( ) "A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])"@en) -AnnotationAssertion(Annotation( ) "if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])"@en) -AnnotationAssertion(Annotation( ) "if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])"@en) -AnnotationAssertion(Annotation( ) "if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])"@en) -AnnotationAssertion(Annotation( ) "(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] ") -AnnotationAssertion(Annotation( ) "(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] ") -AnnotationAssertion(Annotation( ) "(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] ") -AnnotationAssertion(Annotation( ) "(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "continuant"@en) -SubClassOf( ) -DisjointClasses( ) -DisjointClasses( ObjectSomeValuesFrom( )) - -# Class: (occurrent) - -AnnotationAssertion( "occurrent") -AnnotationAssertion( "Occurrent") -AnnotationAssertion( "An entity that has temporal parts and that happens, unfolds or develops through time."@en) -AnnotationAssertion( "BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region"@en) -AnnotationAssertion( "BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players."@en) -AnnotationAssertion(Annotation( ) Annotation(rdfs:comment "per discussion with Barry Smith") "Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process."@en) -AnnotationAssertion(Annotation( ) "Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.") -AnnotationAssertion(Annotation( ) "An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])"@en) -AnnotationAssertion(Annotation( ) "Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])"@en) -AnnotationAssertion(Annotation( ) "b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])"@en) -AnnotationAssertion(Annotation( ) "(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] ") -AnnotationAssertion(Annotation( ) "(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "occurrent"@en) -SubClassOf( ) -DisjointClasses( ObjectSomeValuesFrom( )) - -# Class: (independent continuant) - -AnnotationAssertion( "ic") -AnnotationAssertion( "IndependentContinuant") -AnnotationAssertion( "a chair"@en) -AnnotationAssertion( "a heart"@en) -AnnotationAssertion( "a leg"@en) -AnnotationAssertion( "a molecule"@en) -AnnotationAssertion( "a spatial region"@en) -AnnotationAssertion( "an atom"@en) -AnnotationAssertion( "an orchestra."@en) -AnnotationAssertion( "an organism"@en) -AnnotationAssertion( "the bottom right portion of a human torso"@en) -AnnotationAssertion( "the interior of your mouth"@en) -AnnotationAssertion( "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything."@en) -AnnotationAssertion(Annotation( ) "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])"@en) -AnnotationAssertion(Annotation( ) "For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])"@en) -AnnotationAssertion(Annotation( ) "For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])"@en) -AnnotationAssertion(Annotation( ) "(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] ") -AnnotationAssertion(Annotation( ) "(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] ") -AnnotationAssertion(Annotation( ) "(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "independent continuant"@en) -SubClassOf( ) -DisjointClasses( ) -DisjointClasses( ) - -# Class: (process) - -AnnotationAssertion( "process") -AnnotationAssertion( "Process") -AnnotationAssertion( "a process of cell-division, \\ a beating of the heart"@en) -AnnotationAssertion( "a process of meiosis"@en) -AnnotationAssertion( "a process of sleeping"@en) -AnnotationAssertion( "the course of a disease"@en) -AnnotationAssertion( "the flight of a bird"@en) -AnnotationAssertion( "the life of an organism"@en) -AnnotationAssertion( "your process of aging."@en) -AnnotationAssertion( "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t."@en) -AnnotationAssertion(Annotation( ) "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])"@en) -AnnotationAssertion( "BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)"@en) -AnnotationAssertion(Annotation( ) "(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "process"@en) -SubClassOf( ) - -# Class: (realizable entity) - -AnnotationAssertion( "realizable") -AnnotationAssertion( "RealizableEntity") -AnnotationAssertion( "the disposition of this piece of metal to conduct electricity."@en) -AnnotationAssertion( "the disposition of your blood to coagulate"@en) -AnnotationAssertion( "the function of your reproductive organs"@en) -AnnotationAssertion( "the role of being a doctor"@en) -AnnotationAssertion( "the role of this boundary to delineate where Utah and Colorado meet"@en) -AnnotationAssertion( "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances."@en) -AnnotationAssertion(Annotation( ) "To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])"@en) -AnnotationAssertion(Annotation( ) "All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])"@en) -AnnotationAssertion(Annotation( ) "(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] ") -AnnotationAssertion(Annotation( ) "(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "realizable entity"@en) -SubClassOf( ) -DisjointClasses( ) - -# Class: (quality) - -AnnotationAssertion( "quality") -AnnotationAssertion( "Quality") -AnnotationAssertion( "quality"@en) -AnnotationAssertion( "the ambient temperature of this portion of air"@en) -AnnotationAssertion( "the color of a tomato"@en) -AnnotationAssertion( "the length of the circumference of your waist"@en) -AnnotationAssertion( "the mass of this piece of gold."@en) -AnnotationAssertion( "the shape of your nose"@en) -AnnotationAssertion( "the shape of your nostril"@en) -AnnotationAssertion( ) -AnnotationAssertion(Annotation( ) "a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])"@en) -AnnotationAssertion(Annotation( ) "If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])"@en) -AnnotationAssertion(Annotation( ) "(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001] ") -AnnotationAssertion(Annotation( ) "(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "quality"@en) -SubClassOf( ) - -# Class: (specifically dependent continuant) - -AnnotationAssertion( "sdc") -AnnotationAssertion( "SpecificallyDependentContinuant") -AnnotationAssertion( "specifically dependent continuant"@en) -AnnotationAssertion( "Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key"@en) -AnnotationAssertion( "of one-sided specifically dependent continuants: the mass of this tomato"@en) -AnnotationAssertion( "of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates."@en) -AnnotationAssertion( "the disposition of this fish to decay"@en) -AnnotationAssertion( "the function of this heart: to pump blood"@en) -AnnotationAssertion( "the mutual dependence of proton donors and acceptors in chemical reactions [79"@en) -AnnotationAssertion( "the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction"@en) -AnnotationAssertion( "the pink color of a medium rare piece of grilled filet mignon at its center"@en) -AnnotationAssertion( "the role of being a doctor"@en) -AnnotationAssertion( "the shape of this hole."@en) -AnnotationAssertion( "the smell of this portion of mozzarella"@en) -AnnotationAssertion( "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same."@en) -AnnotationAssertion(Annotation( ) "b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])"@en) -AnnotationAssertion(Annotation( ) "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])"@en) -AnnotationAssertion(Annotation( ) Annotation(rdfs:comment "per discussion with Barry Smith") "Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc."@en) -AnnotationAssertion( ) -AnnotationAssertion(Annotation( ) "(iff (RelationalSpecificallyDependentContinuant a) (and (SpecificallyDependentContinuant a) (forall (t) (exists (b c) (and (not (SpatialRegion b)) (not (SpatialRegion c)) (not (= b c)) (not (exists (d) (and (continuantPartOfAt d b t) (continuantPartOfAt d c t)))) (specificallyDependsOnAt a b t) (specificallyDependsOnAt a c t)))))) // axiom label in BFO2 CLIF: [131-004] ") -AnnotationAssertion(Annotation( ) "(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "specifically dependent continuant"@en) -SubClassOf( ) -DisjointClasses( ) - -# Class: (role) - -AnnotationAssertion( "role") -AnnotationAssertion( "Role") -AnnotationAssertion( "John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married."@en) -AnnotationAssertion( "the priest role"@en) -AnnotationAssertion( "the role of a boundary to demarcate two neighboring administrative territories"@en) -AnnotationAssertion( "the role of a building in serving as a military target"@en) -AnnotationAssertion( "the role of a stone in marking a property boundary"@en) -AnnotationAssertion( "the role of subject in a clinical trial"@en) -AnnotationAssertion( "the student role"@en) -AnnotationAssertion( "A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts."@en) -AnnotationAssertion( "BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives."@en) -AnnotationAssertion(Annotation( ) "b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])"@en) -AnnotationAssertion(Annotation( ) "(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "role"@en) -SubClassOf( ) - -# Class: (object) - -AnnotationAssertion( "object") -AnnotationAssertion( "Object") -AnnotationAssertion( "atom"@en) -AnnotationAssertion( "cell"@en) -AnnotationAssertion( "cells and organisms"@en) -AnnotationAssertion( "engineered artifacts"@en) -AnnotationAssertion( "grain of sand"@en) -AnnotationAssertion( "molecule"@en) -AnnotationAssertion( "organelle"@en) -AnnotationAssertion( "organism"@en) -AnnotationAssertion( "planet"@en) -AnnotationAssertion( "solid portions of matter"@en) -AnnotationAssertion( "star"@en) -AnnotationAssertion( "BFO 2 Reference: BFO rests on the presupposition that at multiple micro-, meso- and macroscopic scales reality exhibits certain stable, spatially separated or separable material units, combined or combinable into aggregates of various sorts (for example organisms into what are called ‘populations’). Such units play a central role in almost all domains of natural science from particle physics to cosmology. Many scientific laws govern the units in question, employing general terms (such as ‘molecule’ or ‘planet’) referring to the types and subtypes of units, and also to the types and subtypes of the processes through which such units develop and interact. The division of reality into such natural units is at the heart of biological science, as also is the fact that these units may form higher-level units (as cells form multicellular organisms) and that they may also form aggregates of units, for example as cells form portions of tissue and organs form families, herds, breeds, species, and so on. At the same time, the division of certain portions of reality into engineered units (manufactured artifacts) is the basis of modern industrial technology, which rests on the distributed mass production of engineered parts through division of labor and on their assembly into larger, compound units such as cars and laptops. The division of portions of reality into units is one starting point for the phenomenon of counting."@en) -AnnotationAssertion( "BFO 2 Reference: Each object is such that there are entities of which we can assert unproblematically that they lie in its interior, and other entities of which we can assert unproblematically that they lie in its exterior. This may not be so for entities lying at or near the boundary between the interior and exterior. This means that two objects – for example the two cells depicted in Figure 3 – may be such that there are material entities crossing their boundaries which belong determinately to neither cell. Something similar obtains in certain cases of conjoined twins (see below)."@en) -AnnotationAssertion( "BFO 2 Reference: To say that b is causally unified means: b is a material entity which is such that its material parts are tied together in such a way that, in environments typical for entities of the type in question,if c, a continuant part of b that is in the interior of b at t, is larger than a certain threshold size (which will be determined differently from case to case, depending on factors such as porosity of external cover) and is moved in space to be at t at a location on the exterior of the spatial region that had been occupied by b at t, then either b’s other parts will be moved in coordinated fashion or b will be damaged (be affected, for example, by breakage or tearing) in the interval between t and t.causal changes in one part of b can have consequences for other parts of b without the mediation of any entity that lies on the exterior of b. Material entities with no proper material parts would satisfy these conditions trivially. Candidate examples of types of causal unity for material entities of more complex sorts are as follows (this is not intended to be an exhaustive list):CU1: Causal unity via physical coveringHere the parts in the interior of the unified entity are combined together causally through a common membrane or other physical covering\\. The latter points outwards toward and may serve a protective function in relation to what lies on the exterior of the entity [13, 47"@en) -AnnotationAssertion( "BFO 2 Reference: an object is a maximal causally unified material entity"@en) -AnnotationAssertion( "BFO 2 Reference: ‘objects’ are sometimes referred to as ‘grains’ [74"@en) -AnnotationAssertion(Annotation( ) "b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001])"@en) -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "object"@en) -SubClassOf( ) - -# Class: (generically dependent continuant) - -AnnotationAssertion( "gdc") -AnnotationAssertion( "GenericallyDependentContinuant") -AnnotationAssertion( "The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity."@en) -AnnotationAssertion( "the pdf file on your laptop, the pdf file that is a copy thereof on my laptop"@en) -AnnotationAssertion( "the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule."@en) -AnnotationAssertion( "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time."@en) -AnnotationAssertion(Annotation( ) "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])"@en) -AnnotationAssertion(Annotation( ) "(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "generically dependent continuant"@en) -SubClassOf( ) - -# Class: (material entity) - -AnnotationAssertion( "material") -AnnotationAssertion( "MaterialEntity") -AnnotationAssertion( "material entity"@en) -AnnotationAssertion( "a flame"@en) -AnnotationAssertion( "a forest fire"@en) -AnnotationAssertion( "a human being"@en) -AnnotationAssertion( "a hurricane"@en) -AnnotationAssertion( "a photon"@en) -AnnotationAssertion( "a puff of smoke"@en) -AnnotationAssertion( "a sea wave"@en) -AnnotationAssertion( "a tornado"@en) -AnnotationAssertion( "an aggregate of human beings."@en) -AnnotationAssertion( "an energy wave"@en) -AnnotationAssertion( "an epidemic"@en) -AnnotationAssertion( "the undetached arm of a human being"@en) -AnnotationAssertion( "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time."@en) -AnnotationAssertion( "BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60"@en) -AnnotationAssertion( "BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity."@en) -AnnotationAssertion( "BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here."@en) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(Annotation( ) "A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])"@en) -AnnotationAssertion(Annotation( ) "Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])"@en) -AnnotationAssertion(Annotation( ) "every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])"@en) -AnnotationAssertion(Annotation( ) "(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] ") -AnnotationAssertion(Annotation( ) "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] ") -AnnotationAssertion(Annotation( ) "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] ") -AnnotationAssertion(rdfs:isDefinedBy ) -AnnotationAssertion(rdfs:label "material entity"@en) -SubClassOf( ) - -# Class: (measurement unit label) - -AnnotationAssertion( "measurement unit label"@en) -AnnotationAssertion( "Examples of measurement unit labels are liters, inches, weight per volume."@en) -AnnotationAssertion( ) -AnnotationAssertion( "A measurement unit label is as a label that is part of a scalar measurement datum and denotes a unit of measure."@en) -AnnotationAssertion( "2009-03-16: provenance: a term measurement unit was -proposed for OBI (OBI_0000176) , edited by Chris Stoeckert and -Cristian Cocos, and subsequently moved to IAO where the objective for -which the original term was defined was satisfied with the definition -of this, different, term."@en) -AnnotationAssertion( "2009-03-16: review of this term done during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI."@en) -AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) -AnnotationAssertion( "PERSON: Melanie Courtot"@en) -AnnotationAssertion(rdfs:label "measurement unit label"@en) -SubClassOf( ) - -# Class: (objective specification) - -AnnotationAssertion( "objective specification"@en) -AnnotationAssertion( "In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction."@en) -AnnotationAssertion( ) -AnnotationAssertion( "A directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved."@en) -AnnotationAssertion( "2009-03-16: original definition when imported from OBI read: \"objective is an non realizable information entity which can serve as that proper part of a plan towards which the realization of the plan is directed.\""@en) -AnnotationAssertion( "2014-03-31: In the example of usage (\"In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction\") there is a protocol which is the ChIP assay protocol. In addition to being concretized on paper, the protocol can be concretized as a realizable entity, such as a plan that inheres in a person. The objective specification is the part that says that some protein and DNA interactions are identified. This is a specification of a process endpoint: the boundary in the process before which they are not identified and after which they are. During the realization of the plan, the goal is to get to the point of having the interactions, and participants in the realization of the plan try to do that."@en) -AnnotationAssertion( "Answers the question, why did you do this experiment?"@en) -AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) -AnnotationAssertion( "PERSON: Barry Smith"@en) -AnnotationAssertion( "PERSON: Bjoern Peters"@en) -AnnotationAssertion( "PERSON: Jennifer Fostel"@en) -AnnotationAssertion( "goal specification"@en) -AnnotationAssertion( "OBI Plan and Planned Process/Roles Branch"@en) -AnnotationAssertion( "OBI_0000217"@en) -AnnotationAssertion(rdfs:label "objective specification"@en) -SubClassOf( ) - -# Class: (action specification) - -AnnotationAssertion( "Pour the contents of flask 1 into flask 2"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A directive information entity that describes an action the bearer will take."@en) -AnnotationAssertion( "Alan Ruttenberg"@en) -AnnotationAssertion( "OBI Plan and Planned Process branch"@en) -AnnotationAssertion(rdfs:label "action specification"@en) -SubClassOf( ) - -# Class: (datum label) - -AnnotationAssertion( "datum label"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A label is a symbol that is part of some other datum and is used to either partially define the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label"@en) -AnnotationAssertion( "http://www.golovchenko.org/cgi-bin/wnsearch?q=label#4n"@en) -AnnotationAssertion( "GROUP: IAO"@en) -AnnotationAssertion( "9/22/11 BP: changed the rdfs:label for this class from 'label' to 'datum label' to convey that this class is not intended to cover all kinds of labels (stickers, radiolabels, etc.), and not even all kind of textual labels, but rather the kind of labels occuring in a datum. -") -AnnotationAssertion(rdfs:label "datum label"@en) -SubClassOf( ) - -# Class: (software) - -AnnotationAssertion( "software"@en) -AnnotationAssertion( ) -AnnotationAssertion( "Software is a plan specification composed of a series of instructions that can be -interpreted by or directly executed by a processing unit."@en) -AnnotationAssertion( "see sourceforge tracker discussion at http://sourceforge.net/tracker/index.php?func=detail&aid=1958818&group_id=177891&atid=886178"@en) -AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) -AnnotationAssertion( "PERSON: Bjoern Peters"@en) -AnnotationAssertion( "PERSON: Chris Stoeckert"@en) -AnnotationAssertion( "PERSON: Melanie Courtot"@en) -AnnotationAssertion( "GROUP: OBI"@en) -AnnotationAssertion(rdfs:label "software"@en) -SubClassOf( ) - -# Class: (information carrier) - -AnnotationAssertion( "information carrier"@en) -AnnotationAssertion( "In the case of a printed paperback novel the physicality of the ink and of the paper form part of the information bearer. The qualities of appearing black and having a certain pattern for the ink and appearing white for the paper form part of the information carrier in this case."@en) -AnnotationAssertion( ) -AnnotationAssertion( "A quality of an information bearer that imparts the information content"@en) -AnnotationAssertion( "12/15/09: There is a concern that some ways that carry information may be processes rather than qualities, such as in a 'delayed wave carrier'."@en) -AnnotationAssertion( "2014-03-10: We are not certain that all information carriers are qualities. There was a discussion of dropping it.") -AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) -AnnotationAssertion( "Smith, Ceusters, Ruttenberg, 2000 years of philosophy"@en) -AnnotationAssertion(rdfs:label "information carrier"@en) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (data item) - -AnnotationAssertion( "data item"@en) -AnnotationAssertion( "Data items include counts of things, analyte concentrations, and statistical summaries."@en) -AnnotationAssertion( ) -AnnotationAssertion( "An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements."@en) -AnnotationAssertion( "2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers."@en) -AnnotationAssertion( "2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum."@en) -AnnotationAssertion( "2009-03-16: removed datum as alternative term as datum specifically refers to singular form, and is thus not an exact synonym."@en) -AnnotationAssertion( "JAR: datum -- well, this will be very tricky to define, but maybe some -information-like stuff that might be put into a computer and that is -meant, by someone, to denote and/or to be interpreted by some -process... I would include lists, tables, sentences... I think I might -defer to Barry, or to Brian Cantwell Smith - -JAR: A data item is an approximately justified approximately true approximate belief"@en) -AnnotationAssertion( "2014-03-31: See discussion at http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/") -AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) -AnnotationAssertion( "PERSON: Chris Stoeckert"@en) -AnnotationAssertion( "PERSON: Jonathan Rees"@en) -AnnotationAssertion( "data"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "data item"@en) -SubClassOf( ) - -# Class: (information content entity) - -AnnotationAssertion( "information content entity"@en) -AnnotationAssertion( "Examples of information content entites include journal articles, data, graphical layouts, and graphs."@en) -AnnotationAssertion( ) -AnnotationAssertion( "A generically dependent continuant that is about some thing."@en) -AnnotationAssertion( "2014-03-10: The use of \"thing\" is intended to be general enough to include universals and configurations (see https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ)."@en) -AnnotationAssertion( "information_content_entity 'is_encoded_in' some digital_entity in obi before split (040907). information_content_entity 'is_encoded_in' some physical_document in obi before split (040907). - -Previous. An information content entity is a non-realizable information entity that 'is encoded in' some digital or physical entity."@en) -AnnotationAssertion( "PERSON: Chris Stoeckert"@en) -AnnotationAssertion( "OBI_0000142"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "information content entity"@en) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (directive information entity) - -AnnotationAssertion( ) -AnnotationAssertion( "An information content entity whose concretizations indicate to their bearer how to realize them in a process."@en) -AnnotationAssertion( "2009-03-16: provenance: a term realizable information entity was proposed for OBI (OBI_0000337) , edited by the PlanAndPlannedProcess branch. Original definition was \"is the specification of a process that can be concretized and realized by an actor\" with alternative term \"instruction\".It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term."@en) -AnnotationAssertion( "2013-05-30 Alan Ruttenberg: What differentiates a directive information entity from an information concretization is that it can have concretizations that are either qualities or realizable entities. The concretizations that are realizable entities are created when an individual chooses to take up the direction, i.e. has the intention to (try to) realize it."@en) -AnnotationAssertion( "8/6/2009 Alan Ruttenberg: Changed label from \"information entity about a realizable\" after discussions at ICBO"@en) -AnnotationAssertion( "Werner pushed back on calling it realizable information entity as it isn't realizable. However this name isn't right either. An example would be a recipe. The realizable entity would be a plan, but the information entity isn't about the plan, it, once concretized, *is* the plan. -Alan"@en) -AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) -AnnotationAssertion( "PERSON: Bjoern Peters"@en) -AnnotationAssertion(rdfs:label "directive information entity"@en) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (dot plot) - -AnnotationAssertion( "dot plot"@en) -AnnotationAssertion( "Dot plot of SSC-H and FSC-H."@en) -AnnotationAssertion( ) -AnnotationAssertion( "A dot plot is a report graph which is a graphical representation of data where each data point is represented by a single dot placed on coordinates corresponding to data point values in particular dimensions."@en) -AnnotationAssertion( "person:Allyson Lister"@en) -AnnotationAssertion( "person:Chris Stoeckert"@en) -AnnotationAssertion( "OBI_0000123"@en) -AnnotationAssertion( "group:OBI"@en) -AnnotationAssertion(rdfs:label "dot plot"@en) -SubClassOf( ) - -# Class: (graph) - -AnnotationAssertion( "graph"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A diagram that presents one or more tuples of information by mapping those tuples in to a two dimensional space in a non arbitrary way."@en) -AnnotationAssertion( "PERSON: Lawrence Hunter"@en) -AnnotationAssertion( "person:Alan Ruttenberg"@en) -AnnotationAssertion( "person:Allyson Lister"@en) -AnnotationAssertion( "OBI_0000240"@en) -AnnotationAssertion( "group:OBI"@en) -AnnotationAssertion(rdfs:label "graph"@en) -SubClassOf( ) - -# Class: (algorithm) - -AnnotationAssertion( "algorithm"@en) -AnnotationAssertion( "PMID: 18378114.Genomics. 2008 Mar 28. LINKGEN: A new algorithm to process data in genetic linkage studies."@en) -AnnotationAssertion( ) -AnnotationAssertion( "A plan specification which describes the inputs and output of mathematical functions as well as workflow of execution for achieving an predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata."@en) -AnnotationAssertion( "Philippe Rocca-Serra"@en) -AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) -AnnotationAssertion( "OBI_0000270"@en) -AnnotationAssertion( "adapted from discussion on OBI list (Matthew Pocock, Christian Cocos, Alan Ruttenberg)"@en) -AnnotationAssertion(rdfs:label "algorithm"@en) -SubClassOf( ) - -# Class: (curation status specification) - -AnnotationAssertion( "curation status specification"@en) -AnnotationAssertion( ) -AnnotationAssertion( "The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value."@en) -AnnotationAssertion( "Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)"@en) -AnnotationAssertion( "PERSON:Bill Bug"@en) -AnnotationAssertion( "GROUP:OBI:"@en) -AnnotationAssertion( "OBI_0000266"@en) -AnnotationAssertion(rdfs:label "curation status specification"@en) -EquivalentClasses( ObjectOneOf( )) -SubClassOf( ) - -# Class: (source code module) - -AnnotationAssertion( "source code module"@en) -AnnotationAssertion( "The written source code that implements part of an algorithm. Test - if you know that it was written in a specific language, then it can be source code module. We mean here, roughly, the wording of a document such as a perl script."@en) -AnnotationAssertion( ) -AnnotationAssertion( "A source code module is a directive information entity that specifies, using a programming language, some algorithm."@en) -AnnotationAssertion( "person:Alan Ruttenberg"@en) -AnnotationAssertion( "person:Chris Stoeckert"@en) -AnnotationAssertion( "OBI_0000039"@en) -AnnotationAssertion( "group:OBI"@en) -AnnotationAssertion(rdfs:label "source code module"@en) -SubClassOf( ) - -# Class: (data format specification) - -AnnotationAssertion( "data format specification"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A data format specification is the information content borne by the document published defining the specification. -Example: The ISO document specifying what encompasses an XML document; The instructions in a XSD file"@en) -AnnotationAssertion( "2009-03-16: provenance: term imported from OBI_0000187, which had original definition \"A data format specification is a plan which organizes -information. Example: The ISO document specifying what encompasses an -XML document; The instructions in a XSD file\""@en) -AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) -AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) -AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "OBI_0000187"@en) -AnnotationAssertion(rdfs:label "data format specification"@en) -SubClassOf( ) - -# Class: (data set) - -AnnotationAssertion( "data set"@en) -AnnotationAssertion( "Intensity values in a CEL file or from multiple CEL files comprise a data set (as opposed to the CEL files themselves)."@en) -AnnotationAssertion( ) -AnnotationAssertion( "A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets."@en) -AnnotationAssertion( "2009/10/23 Alan Ruttenberg. The intention is that this term represent collections of like data. So this isn't for, e.g. the whole contents of a cel file, which includes parameters, metadata etc. This is more like java arrays of a certain rather specific type"@en) -AnnotationAssertion( "2014-05-05: Data sets are aggregates and thus must include two or more data items. We have chosen not to add logical axioms to make this restriction.") -AnnotationAssertion( "person:Allyson Lister"@en) -AnnotationAssertion( "person:Chris Stoeckert"@en) -AnnotationAssertion( "OBI_0000042"@en) -AnnotationAssertion( "group:OBI"@en) -AnnotationAssertion(rdfs:label "data set"@en) -SubClassOf( ) - -# Class: (image) - -AnnotationAssertion( "image"@en) -AnnotationAssertion( ) -AnnotationAssertion( "An image is an affine projection to a two dimensional surface, of measurements of some quality of an entity or entities repeated at regular intervals across a spatial range, where the measurements are represented as color and luminosity on the projected on surface."@en) -AnnotationAssertion( "person:Alan Ruttenberg"@en) -AnnotationAssertion( "person:Allyson"@en) -AnnotationAssertion( "person:Chris Stoeckert"@en) -AnnotationAssertion( "OBI_0000030"@en) -AnnotationAssertion( "group:OBI"@en) -AnnotationAssertion(rdfs:label "image"@en) -SubClassOf( ) - -# Class: (data about an ontology part) - -AnnotationAssertion( "data about an ontology part"@en) -AnnotationAssertion( "Data about an ontology part is a data item about a part of an ontology, for example a term"@en) -AnnotationAssertion( "Person:Alan Ruttenberg"@en) -AnnotationAssertion(rdfs:label "data about an ontology part"@en) -SubClassOf( ) - -# Class: (plan specification) - -AnnotationAssertion( "plan specification"@en) -AnnotationAssertion( "PMID: 18323827.Nat Med. 2008 Mar;14(3):226.New plan proposed to help resolve conflicting medical advice."@en) -AnnotationAssertion( ) -AnnotationAssertion( "A directive information entity with action specifications and objective specifications as parts that, when concretized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified."@en) -AnnotationAssertion( "2009-03-16: provenance: a term a plan was proposed for OBI (OBI_0000344) , edited by the PlanAndPlannedProcess branch. Original definition was \" a plan is a specification of a process that is realized by an actor to achieve the objective specified as part of the plan\". It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term."@en) -AnnotationAssertion( "2014-03-31: A plan specification can have other parts, such as conditional specifications."@en) -AnnotationAssertion( "Alternative previous definition: a plan is a set of instructions that specify how an objective should be achieved"@en) -AnnotationAssertion( "Alan Ruttenberg"@en) -AnnotationAssertion( "OBI Plan and Planned Process branch"@en) -AnnotationAssertion( "OBI_0000344"@en) -AnnotationAssertion(rdfs:comment "2/3/2009 Comment from OBI review. - -Action specification not well enough specified. -Conditional specification not well enough specified. -Question whether all plan specifications have objective specifications. - -Request that IAO either clarify these or change definitions not to use them"@en) -AnnotationAssertion(rdfs:label "plan specification"@en) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (material information bearer) - -AnnotationAssertion( "material information bearer"@en) -AnnotationAssertion( "A page of a paperback novel with writing on it. The paper itself is a material information bearer, the pattern of ink is the information carrier."@en) -AnnotationAssertion( "a brain"@en) -AnnotationAssertion( "a hard drive"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A material entity in which a concretization of an information content entity inheres."@en) -AnnotationAssertion( "GROUP: IAO"@en) -AnnotationAssertion(rdfs:label "material information bearer"@en) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))) -SubClassOf( ) - -# Class: (histogram) - -AnnotationAssertion( "histogram"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A histogram is a report graph which is a statistical description of a -distribution in terms of occurrence frequencies of different event classes."@en) -AnnotationAssertion( "PERSON:Chris Stoeckert"@en) -AnnotationAssertion( "PERSON:James Malone"@en) -AnnotationAssertion( "PERSON:Melanie Courtot"@en) -AnnotationAssertion( "GROUP:OBI"@en) -AnnotationAssertion(rdfs:label "histogram"@en) -SubClassOf( ) - -# Class: (heatmap) - -AnnotationAssertion( "heatmap"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A heatmap is a report graph which is a graphical representation of data -where the values taken by a variable(s) are shown as colors in a -two-dimensional map."@en) -AnnotationAssertion( "PERSON:Chris Stoeckert"@en) -AnnotationAssertion( "PERSON:James Malone"@en) -AnnotationAssertion( "PERSON:Melanie Courtot"@en) -AnnotationAssertion( "GROUP:OBI"@en) -AnnotationAssertion(rdfs:label "heatmap"@en) -SubClassOf( ) - -# Class: (dendrogram) - -AnnotationAssertion( "dendrogram"@en) -AnnotationAssertion( "Dendrograms are often used in computational biology to -illustrate the clustering of genes."@en) -AnnotationAssertion( ) -AnnotationAssertion( "A dendrogram is a report graph which is a tree diagram -frequently used to illustrate the arrangement of the clusters produced by a -clustering algorithm."@en) -AnnotationAssertion( "PERSON:Chris Stoeckert"@en) -AnnotationAssertion( "PERSON:James Malone"@en) -AnnotationAssertion( "PERSON:Melanie Courtot"@en) -AnnotationAssertion( "WEB: http://en.wikipedia.org/wiki/Dendrogram"@en) -AnnotationAssertion(rdfs:label "dendrogram"@en) -SubClassOf( ) - -# Class: (scatter plot) - -AnnotationAssertion( "scatter plot"@en) -AnnotationAssertion( "Comparison of gene expression values in two samples can be displayed in a scatter plot"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A scatterplot is a graph which uses Cartesian coordinates to display values for two variables for a set of data. The data is displayed as a collection of points, each having the value of one variable determining the position on the horizontal axis and the value of the other variable determining the position on the vertical axis."@en) -AnnotationAssertion( "PERSON:Chris Stoeckert"@en) -AnnotationAssertion( "PERSON:James Malone"@en) -AnnotationAssertion( "PERSON:Melanie Courtot"@en) -AnnotationAssertion( "scattergraph"@en) -AnnotationAssertion( "WEB: http://en.wikipedia.org/wiki/Scatterplot"@en) -AnnotationAssertion(rdfs:label "scatter plot"@en) -SubClassOf( ) - -# Class: (obsolescence reason specification) - -AnnotationAssertion( "obsolescence reason specification"@en) -AnnotationAssertion( ) -AnnotationAssertion( "The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value."@en) -AnnotationAssertion( "The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology."@en) -AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) -AnnotationAssertion( "PERSON: Melanie Courtot"@en) -AnnotationAssertion(rdfs:label "obsolescence reason specification"@en) -EquivalentClasses( ObjectOneOf( )) -SubClassOf( ) - -# Class: (figure) - -AnnotationAssertion( "figure"@en) -AnnotationAssertion( "Any picture, diagram or table"@en) -AnnotationAssertion( ) -AnnotationAssertion( "An information content entity consisting of a two dimensional arrangement of information content entities such that the arrangement itself is about something."@en) -AnnotationAssertion( "PERSON: Lawrence Hunter"@en) -AnnotationAssertion(rdfs:label "figure"@en) -SubClassOf( ) - -# Class: (diagram) - -AnnotationAssertion( "diagram"@en) -AnnotationAssertion( "A molecular structure ribbon cartoon showing helices, turns and sheets and their relations to each other in space."@en) -AnnotationAssertion( ) -AnnotationAssertion( "A figure that expresses one or more propositions"@en) -AnnotationAssertion( "PERSON: Lawrence Hunter"@en) -AnnotationAssertion(rdfs:label "diagram"@en) -SubClassOf( ) - -# Class: (document) - -AnnotationAssertion( "document"@en) -AnnotationAssertion( "A journal article, patent application, laboratory notebook, or a book"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A collection of information content entities intended to be understood together as a whole"@en) -AnnotationAssertion( "PERSON: Lawrence Hunter"@en) -AnnotationAssertion(rdfs:label "document"@en) -SubClassOf( ) - -# Class: (denotator type) - -AnnotationAssertion( "denotator type"@en) -AnnotationAssertion( "The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are \"natural kinds\" and the latter arbitrary collections of entities."@en) -AnnotationAssertion( "A denotator type indicates how a term should be interpreted from an ontological perspective."@en) -AnnotationAssertion( "Alan Ruttenberg"@en) -AnnotationAssertion( "Barry Smith, Werner Ceusters"@en) -AnnotationAssertion(rdfs:label "denotator type"@en) -EquivalentClasses( ObjectOneOf( )) -SubClassOf( ) - -# Class: (Viruses) - -AnnotationAssertion( "Viruses") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "Viruses") -SubClassOf( ) - -# Class: (Euteleostomi) - -AnnotationAssertion( "Euteleostomi") -AnnotationAssertion( "bony vertebrates") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "Euteleostomi") -SubClassOf( ) - -# Class: (Bacteria) - -AnnotationAssertion( "Bacteria") -AnnotationAssertion( "eubacteria") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "Bacteria") -SubClassOf( ) - -# Class: (Archaea) - -AnnotationAssertion( "Archaea") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "Archaea") -SubClassOf( ) - -# Class: (Eukaryota) - -AnnotationAssertion( "Eukaryota") -AnnotationAssertion( "eucaryotes") -AnnotationAssertion( "eukaryotes") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "Eukaryota") -SubClassOf( ) - -# Class: (Euarchontoglires) - -AnnotationAssertion( "Euarchontoglires") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "Euarchontoglires") -SubClassOf( ) - -# Class: (Tetrapoda) - -AnnotationAssertion( "Tetrapoda") -AnnotationAssertion( "tetrapods") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "Tetrapoda") -SubClassOf( ) - -# Class: (Amniota) - -AnnotationAssertion( "Amniota") -AnnotationAssertion( "amniotes") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "Amniota") -SubClassOf( ) - -# Class: (Opisthokonta) - -AnnotationAssertion( "Opisthokonta") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "Opisthokonta") -SubClassOf( ) - -# Class: (Metazoa) - -AnnotationAssertion( "Metazoa") -AnnotationAssertion( "metazoans") -AnnotationAssertion( "multicellular animals") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "Metazoa") -SubClassOf( ) - -# Class: (Bilateria) - -AnnotationAssertion( "Bilateria") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "Bilateria") -SubClassOf( ) - -# Class: (Mammalia) - -AnnotationAssertion( "Mammalia") -AnnotationAssertion( "mammals") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "Mammalia") -SubClassOf( ) - -# Class: (Vertebrata ) - -AnnotationAssertion( "Vertebrata ") -AnnotationAssertion( "Vertebrata") -AnnotationAssertion( "vertebrates") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "Vertebrata ") -SubClassOf( ) - -# Class: (Homo sapiens) - -AnnotationAssertion( "Homo sapiens") -AnnotationAssertion( "human") -AnnotationAssertion( "human being") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "Homo sapiens") -SubClassOf( ) - -# Class: (planned process) - -AnnotationAssertion( "planned process"@en) -AnnotationAssertion( "planned process") -AnnotationAssertion( "Injecting mice with a vaccine in order to test its efficacy") -AnnotationAssertion( ) -AnnotationAssertion( "A process that realizes a plan which is the concretization of a plan specification."@en) -AnnotationAssertion( "'Plan' includes a future direction sense. That can be problematic if plans are changed during their execution. There are however implicit contingencies for protocols that an agent has in his mind that can be considered part of the plan, even if the agent didn't have them in mind before. Therefore, a planned process can diverge from what the agent would have said the plan was before executing it, by adjusting to problems encountered during execution (e.g. choosing another reagent with equivalent properties, if the originally planned one has run out.)") -AnnotationAssertion( "We are only considering successfully completed planned processes. A plan may be modified, and details added during execution. For a given planned process, the associated realized plan specification is the one encompassing all changes made during execution. This means that all processes in which an agent acts towards achieving some -objectives is a planned process.") -AnnotationAssertion( "Bjoern Peters") -AnnotationAssertion( "branch derived") -AnnotationAssertion( "This class merges the previously separated objective driven process and planned process, as they the separation proved hard to maintain. (1/22/09, branch call)"@en) -AnnotationAssertion( "6/11/9: Edited at workshop. Used to include: is initiated by an agent") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "planned process"@en) -EquivalentClasses( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (regulator role) - -AnnotationAssertion( "regulator role") -AnnotationAssertion( "Fact sheet - Regulating the companies The role of the regulator. Ofwat is the economic regulator of the water and sewerage industry in England and Wales. http://www.ofwat.gov.uk/aptrix/ofwat/publish.nsf/Content/roleofregulator_factsheet170805"@en) -AnnotationAssertion( ) -AnnotationAssertion( "a regulatory role involved with making and/or enforcing relevant legislation and governmental orders"@en) -AnnotationAssertion( "Person:Jennifer Fostel"@en) -AnnotationAssertion( "regulator") -AnnotationAssertion( "OBI"@en) -AnnotationAssertion(rdfs:label "regulator role"@en) -SubClassOf( ) - -# Class: (regulatory role) - -AnnotationAssertion( "regulatory role"@en) -AnnotationAssertion( "Regulatory agency, Ethics committee, Approval letter; example: Browse these EPA Regulatory Role subtopics http://www.epa.gov/ebtpages/enviregulatoryrole.html Feb 29, 2008"@en) -AnnotationAssertion( ) -AnnotationAssertion( "a role which inheres in material entities and is realized in the processes of making, enforcing or being defined by legislation or orders issued by a governmental body."@en) -AnnotationAssertion( "GROUP: Role branch"@en) -AnnotationAssertion( "OBI, CDISC"@en) -AnnotationAssertion( "govt agents responsible for creating regulations; proxies for enforcing regulations. CDISC definition: regulatory authorities. Bodies having the power to regulate. NOTE: In the ICH GCP guideline the term includes the authorities that review submitted clinical data and those that conduct inspections. These bodies are sometimes referred to as competent"@en) -AnnotationAssertion(rdfs:label "regulatory role"@en) -SubClassOf( ) - -# Class: (material supplier role) - -AnnotationAssertion( "material supplier role") -AnnotationAssertion( "Jackson Labs is an organization which provide mice as experimental material") -AnnotationAssertion( ) -AnnotationAssertion( "a role realized through the process of supplying materials such as animal subjects, reagents or other materials used in an investigation."@en) -AnnotationAssertion( "Supplier role is a special kind of service, e.g. biobank") -AnnotationAssertion( "PERSON:Jennifer Fostel"@en) -AnnotationAssertion( "material provider role") -AnnotationAssertion( "supplier") -AnnotationAssertion(rdfs:label "material supplier role"@en) -SubClassOf( ) - -# Class: (classified data set) - -AnnotationAssertion( "classified data set") -AnnotationAssertion( ) -AnnotationAssertion( "A data set that is produced as the output of a class prediction data transformation and consists of a data set with assigned class labels."@en) -AnnotationAssertion( "PERSON: James Malone") -AnnotationAssertion( "PERSON: Monnie McGee") -AnnotationAssertion( "data set with assigned class labels") -AnnotationAssertion(rdfs:label "classified data set"@en) -EquivalentClasses( ObjectSomeValuesFrom( )) -SubClassOf( ) - -# Class: (processed material) - -AnnotationAssertion( "processed material"@en) -AnnotationAssertion( "Examples include gel matrices, filter paper, parafilm and buffer solutions, mass spectrometer, tissue samples"@en) -AnnotationAssertion( ) -AnnotationAssertion( "Is a material entity that is created or changed during material processing."@en) -AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) -AnnotationAssertion(rdfs:label "processed material"@en) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (material processing) - -AnnotationAssertion( "material processing") -AnnotationAssertion( "A cell lysis, production of a cloning vector, creating a buffer.") -AnnotationAssertion( ) -AnnotationAssertion( "A planned process which results in physical changes in a specified input material"@en) -AnnotationAssertion( "PERSON: Bjoern Peters"@en) -AnnotationAssertion( "PERSON: Frank Gibson") -AnnotationAssertion( "PERSON: Jennifer Fostel") -AnnotationAssertion( "PERSON: Melanie Courtot") -AnnotationAssertion( "PERSON: Philippe Rocca Serra") -AnnotationAssertion( "material transformation"@en) -AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion(rdfs:label "material processing"@en) -EquivalentClasses( ObjectSomeValuesFrom( )) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectAllValuesFrom( )) - -# Class: (specimen role) - -AnnotationAssertion( "specimen role") -AnnotationAssertion( "liver section; a portion of a culture of cells; a nemotode or other animal once no longer a subject (generally killed); portion of blood from a patient.") -AnnotationAssertion( ) -AnnotationAssertion( "a role borne by a material entity that is gained during a specimen collection process and that can be realized by use of the specimen in an investigation"@en) -AnnotationAssertion( "blood taken from animal: animal continues in study, whereas blood has role specimen. -something taken from study subject, leaves the study and becomes the specimen."@en) -AnnotationAssertion( "parasite example -- when parasite in people we study people, people are subjects and parasites are specimen -- when parasite extracted, they become subject in the following study -specimen can later be subject."@en) -AnnotationAssertion( "22Jun09. The definition includes whole organisms, and can include a human. The link between specimen role and study subject role has been removed. A specimen taken as part of a case study is not considered to be a population representative, while a specimen taken as representing a population, e.g. person taken from a cohort, blood specimen taken from an animal) would be considered a population representative and would also bear material sample role.") -AnnotationAssertion( "Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation.") -AnnotationAssertion( "GROUP: Role Branch") -AnnotationAssertion( "OBI") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "specimen role"@en) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) - -# Class: (organization) - -AnnotationAssertion( "organization"@en) -AnnotationAssertion( "PMID: 16353909.AAPS J. 2005 Sep 22;7(2):E274-80. Review. The joint food and agriculture organization of the United Nations/World Health Organization Expert Committee on Food Additives and its role in the evaluation of the safety of veterinary drug residues in foods."@en) -AnnotationAssertion( ) -AnnotationAssertion( "An entity that can bear roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members."@en) -AnnotationAssertion( "BP: The definition summarizes long email discussions on the OBI developer, roles, biomaterial and denrie branches. It leaves open if an organization is a material entity or a dependent continuant, as no consensus was reached on that. The current placement as material is therefore temporary, in order to move forward with development. Here is the entire email summary, on which the definition is based: - -1) there are organization_member_roles (president, treasurer, branch -editor), with individual persons as bearers - -2) there are organization_roles (employer, owner, vendor, patent holder) - -3) an organization has a charter / rules / bylaws, which specify what roles -there are, how they should be realized, and how to modify the -charter/rules/bylaws themselves. - -It is debatable what the organization itself is (some kind of dependent -continuant or an aggregate of people). This also determines who/what the -bearer of organization_roles' are. My personal favorite is still to define -organization as a kind of 'legal entity', but thinking it through leads to -all kinds of questions that are clearly outside the scope of OBI. - -Interestingly enough, it does not seem to matter much where we place -organization itself, as long as we can subclass it (University, Corporation, -Government Agency, Hospital), instantiate it (Affymetrix, NCBI, NIH, ISO, -W3C, University of Oklahoma), and have it play roles. - -This leads to my proposal: We define organization through the statements 1 - -3 above, but without an 'is a' statement for now. We can leave it in its -current place in the is_a hierarchy (material entity) or move it up to -'continuant'. We leave further clarifications to BFO, and close this issue -for now."@en) -AnnotationAssertion( "PERSON: Alan Ruttenberg") -AnnotationAssertion( "PERSON: Bjoern Peters") -AnnotationAssertion( "PERSON: Philippe Rocca-Serra") -AnnotationAssertion( "PERSON: Susanna Sansone") -AnnotationAssertion( "GROUP: OBI") -AnnotationAssertion(rdfs:label "organization"@en) -SubClassOf( ) - -# Class: (regulatory agency) - -AnnotationAssertion( "regulatory agency"@en) -AnnotationAssertion( "The US Environmental Protection Agency") -AnnotationAssertion( ) -AnnotationAssertion( "A regulatory agency is a organization that has responsibility over or for the legislation (acts and regulations) for a given sector of the government."@en) -AnnotationAssertion( "GROUP: OBI Biomaterial Branch") -AnnotationAssertion( "WEB: en.wikipedia.org/wiki/Regulator") -AnnotationAssertion(rdfs:label "regulatory agency"@en) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (material transformation objective) - -AnnotationAssertion( "material transformation objective") -AnnotationAssertion( "The objective to create a mouse infected with LCM virus. The objective to create a defined solution of PBS.") -AnnotationAssertion( ) -AnnotationAssertion( "an objective specifiction that creates an specific output object from input materials."@en) -AnnotationAssertion( "PERSON: Bjoern Peters") -AnnotationAssertion( "PERSON: Frank Gibson") -AnnotationAssertion( "PERSON: Jennifer Fostel") -AnnotationAssertion( "PERSON: Melanie Courtot") -AnnotationAssertion( "PERSON: Philippe Rocca-Serra") -AnnotationAssertion( "artifact creation objective"@en) -AnnotationAssertion( "GROUP: OBI PlanAndPlannedProcess Branch") -AnnotationAssertion(rdfs:label "material transformation objective"@en) -SubClassOf( ) - -# Class: (manufacturing) - -AnnotationAssertion( "manufacturing") -AnnotationAssertion( ) -AnnotationAssertion( "A planned process with the objective to produce a processed material which will have a function for future use."@en) -AnnotationAssertion( "This includes a single scientist making a processed material for personal use."@en) -AnnotationAssertion( "A person or organization (having manufacturer role) is a participant in this process") -AnnotationAssertion( "Manufacturing implies reproducibility and responsibility AR") -AnnotationAssertion( "PERSON: Bjoern Peters") -AnnotationAssertion( "PERSON: Frank Gibson") -AnnotationAssertion( "PERSON: Jennifer Fostel") -AnnotationAssertion( "PERSON: Melanie Courtot") -AnnotationAssertion( "PERSON: Philippe Rocca-Serra") -AnnotationAssertion( "GROUP: OBI PlanAndPlannedProcess Branch") -AnnotationAssertion(rdfs:label "manufacturing"@en) -EquivalentClasses( ObjectSomeValuesFrom( )) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (manufacturing objective) - -AnnotationAssertion( "manufacturing objective") -AnnotationAssertion( ) -AnnotationAssertion( "is the objective to manufacture a material of a certain function (device)"@en) -AnnotationAssertion( "PERSON: Bjoern Peters") -AnnotationAssertion( "PERSON: Frank Gibson") -AnnotationAssertion( "PERSON: Jennifer Fostel") -AnnotationAssertion( "PERSON: Melanie Courtot") -AnnotationAssertion( "PERSON: Philippe Rocca-Serra") -AnnotationAssertion( "GROUP: OBI PlanAndPlannedProcess Branch") -AnnotationAssertion(rdfs:label "manufacturing objective"@en) -SubClassOf( ) - -# Class: (manufacturer role) - -AnnotationAssertion( "manufacturer role") -AnnotationAssertion( "With respect to The Accuri C6 Flow Cytometer System, the organization Accuri bears the role manufacturer role. With respect to a transformed line of tissue culture cells derived by a specific lab, the lab whose personnel isolated the cll line bears the role manufacturer role. With respect to a specific antibody produced by an individual scientist, the scientist who purifies, characterizes and distributes the anitbody bears the role manufacturer role.") -AnnotationAssertion( ) -AnnotationAssertion( "Manufacturer role is a role which inheres in a person or organization and which is realized by a manufacturing process.") -AnnotationAssertion( "GROUP: Role Branch") -AnnotationAssertion( "OBI") -AnnotationAssertion(rdfs:label "manufacturer role") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( ObjectUnionOf( ))) -SubClassOf( ObjectAllValuesFrom( )) - -# Class: (clustered data set) - -AnnotationAssertion( "clustered data set") -AnnotationAssertion( "A clustered data set is the output of a K means clustering data transformation") -AnnotationAssertion( ) -AnnotationAssertion( "A data set that is produced as the output of a class discovery data transformation and consists of a data set with assigned discovered class labels."@en) -AnnotationAssertion( "PERSON: James Malone") -AnnotationAssertion( "PERSON: Monnie McGee") -AnnotationAssertion( "data set with assigned discovered class labels") -AnnotationAssertion( "AR thinks could be a data item instead") -AnnotationAssertion(rdfs:label "clustered data set"@en) -EquivalentClasses( ObjectSomeValuesFrom( )) -SubClassOf( ) - -# Class: (specimen collection process) - -AnnotationAssertion( "specimen collection process") -AnnotationAssertion( "drawing blood from a patient for analysis, collecting a piece of a plant for depositing in a herbarium, buying meat from a butcher in order to measure its protein content in an investigation") -AnnotationAssertion( ) -AnnotationAssertion( "A planned process with the objective of collecting a specimen.") -AnnotationAssertion( "Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation.") -AnnotationAssertion( "Philly2013: A specimen collection can have as part a material entity acquisition, such as ordering from a bank. The distinction is that specimen collection necessarily involves the creation of a specimen role. However ordering cell lines cells from ATCC for use in an investigation is NOT a specimen collection, because the cell lines already have a specimen role.") -AnnotationAssertion( "Philly2013: The specimen_role for the specimen is created during the specimen collection process.") -AnnotationAssertion( "label changed to 'specimen collection process' on 10/27/2014, details see tracker: -http://sourceforge.net/p/obi/obi-terms/716/") -AnnotationAssertion( "Bjoern Peters") -AnnotationAssertion( "specimen collection") -AnnotationAssertion( "5/31/2012: This process is not necessarily an acquisition, as specimens may be collected from materials already in posession") -AnnotationAssertion( "6/9/09: used at workshop") -AnnotationAssertion(rdfs:label "specimen collection process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (class prediction data transformation) - -AnnotationAssertion( "class prediction data transformation"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A class prediction data transformation (sometimes called supervised classification) is a data transformation that has objective class prediction."@en) -AnnotationAssertion( "James Malone") -AnnotationAssertion( "supervised classification data transformation") -AnnotationAssertion( "PERSON: James Malone"@en) -AnnotationAssertion(rdfs:label "class prediction data transformation"@en) -EquivalentClasses( ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (specimen collection objective) - -AnnotationAssertion( "specimen collection objective") -AnnotationAssertion( "The objective to collect bits of excrement in the rainforest. The objective to obtain a blood sample from a patient.") -AnnotationAssertion( ) -AnnotationAssertion( "A objective specification to obtain a material entity for potential use as an input during an investigation.") -AnnotationAssertion( "Bjoern Peters") -AnnotationAssertion( "Bjoern Peters") -AnnotationAssertion(rdfs:label "specimen collection objective") -SubClassOf( ) - -# Class: (support vector machine) - -AnnotationAssertion( "support vector machine") -AnnotationAssertion( ) -AnnotationAssertion( "A support vector machine is a data transformation with a class prediction objective based on the construction of a separating hyperplane that maximizes the margin between two data sets of vectors in n-dimensional space.") -AnnotationAssertion( "James Malone") -AnnotationAssertion( "Ryan Brinkman") -AnnotationAssertion( "SVM") -AnnotationAssertion( "PERSON: Ryan Brinkman") -AnnotationAssertion(rdfs:label "support vector machine") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (decision tree induction objective) - -AnnotationAssertion( "decision tree induction objective") -AnnotationAssertion( ) -AnnotationAssertion( "A decision tree induction objective is a data transformation objective in which a tree-like graph of edges and nodes is created and from which the selection of each branch requires that some type of logical decision is made.") -AnnotationAssertion( "James Malone") -AnnotationAssertion(rdfs:label "decision tree induction objective") -SubClassOf( ) - -# Class: (decision tree building data transformation) - -AnnotationAssertion( "decision tree building data transformation"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A decision tree building data transformation is a data transformation that has objective decision tree induction."@en) -AnnotationAssertion( "James Malone") -AnnotationAssertion( "PERSON: James Malone"@en) -AnnotationAssertion(rdfs:label "decision tree building data transformation"@en) -EquivalentClasses( ObjectSomeValuesFrom( )) -SubClassOf( ) - -# Class: (GenePattern software) - -AnnotationAssertion( "GenePattern software") -AnnotationAssertion( ) -AnnotationAssertion( "a software that provides access to more than 100 tools for gene expression analysis, proteomics, SNP analysis and common data processing tasks.") -AnnotationAssertion( "James Malone") -AnnotationAssertion( "Person:Helen Parkinson") -AnnotationAssertion( "WEB: http://www.broadinstitute.org/cancer/software/genepattern/") -AnnotationAssertion(rdfs:label "GenePattern software") -SubClassOf( ) - -# Class: (peak matching) - -AnnotationAssertion( "peak matching") -AnnotationAssertion( ) -AnnotationAssertion( "Peak matching is a data transformation performed on a dataset of a graph of ordered data points (e.g. a spectrum) with the objective of pattern matching local maxima above a noise threshold") -AnnotationAssertion( "James Malone") -AnnotationAssertion( "Ryan Brinkman") -AnnotationAssertion( "PERSON: Ryan Brinkman") -AnnotationAssertion(rdfs:label "peak matching") -SubClassOf( ) - -# Class: (k-nearest neighbors) - -AnnotationAssertion( "k-nearest neighbors"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A k-nearest neighbors is a data transformation which achieves a class discovery or partitioning objective, in which an input data object with vector y is assigned to a class label based upon the k closest training data set points to y; where k is the largest value that class label is assigned."@en) -AnnotationAssertion( "James Malone"@en) -AnnotationAssertion( "k-NN") -AnnotationAssertion( "PERSON: James Malone"@en) -AnnotationAssertion(rdfs:label "k-nearest neighbors"@en) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (CART) - -AnnotationAssertion( "CART"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A CART (classification and regression trees) is a data transformation method for producing a classification or regression model with a tree-based structure."@en) -AnnotationAssertion( "James Malone"@en) -AnnotationAssertion( "classification and regression trees") -AnnotationAssertion( "BOOK: David J. Hand, Heikki Mannila and Padhraic Smyth (2001) Principles of Data Mining."@en) -AnnotationAssertion(rdfs:label "CART"@en) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (statistical model validation) - -AnnotationAssertion( "statistical model validation") -AnnotationAssertion( "Using the expression levels of 20 proteins to predict whether a cancer patient will respond to a drug. A practical goal would be to determine which subset of the 20 features should be used to produce the best predictive model. - wikipedia") -AnnotationAssertion( ) -AnnotationAssertion( "A data transformation which assesses how the results of a statistical analysis will generalize to an independent data set.") -AnnotationAssertion( "Helen Parkinson") -AnnotationAssertion( "http://en.wikipedia.org/wiki/Cross-validation_%28statistics%29") -AnnotationAssertion(rdfs:label "statistical model validation") -EquivalentClasses( ObjectSomeValuesFrom( )) -SubClassOf( ) - -# Class: (manufacturer) - -AnnotationAssertion( "manufacturer") -AnnotationAssertion( ) -AnnotationAssertion( "A person or organization that has a manufacturer role.") -AnnotationAssertion(rdfs:label "manufacturer") -EquivalentClasses( ObjectIntersectionOf(ObjectUnionOf( ) ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (service provider role) - -AnnotationAssertion( "service provider role") -AnnotationAssertion( "Jackson Lab provides experimental animals, EBI provides training on databases, a core facility provides access to a DNA sequencer.") -AnnotationAssertion( ) -AnnotationAssertion( "is a role which inheres in a person or organization and is realized in in a planned process which provides access to training, materials or execution of protocols for an organization or person") -AnnotationAssertion( "PERSON:Helen Parkinson") -AnnotationAssertion(rdfs:label "service provider role") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( ObjectUnionOf( ))) -SubClassOf( ObjectAllValuesFrom( )) - -# Class: (processed specimen) - -AnnotationAssertion( "processed specimen") -AnnotationAssertion( "A tissue sample that has been sliced and stained for a histology study. -A blood specimen that has been centrifuged to obtain the white blood cells.") -AnnotationAssertion( ) -AnnotationAssertion( "A specimen that has been intentionally physically modified.") -AnnotationAssertion( "Bjoern Peters") -AnnotationAssertion( "Bjoern Peters") -AnnotationAssertion(rdfs:comment "A tissue sample that has been sliced and stained for a histology study.") -AnnotationAssertion(rdfs:label "processed specimen") -EquivalentClasses( ObjectIntersectionOf( )) -SubClassOf( ) -SubClassOf( ) - -# Class: (categorical label) - -AnnotationAssertion( "categorical label") -AnnotationAssertion( "The labels 'positive' vs. 'negative', or 'left handed', 'right handed', 'ambidexterous', or 'strongly binding', 'weakly binding' , 'not binding', or '+++', '++', '+', '-' etc. form scales of categorical labels.") -AnnotationAssertion( ) -AnnotationAssertion( "A label that is part of a categorical datum and that indicates the value of the data item on the categorical scale.") -AnnotationAssertion( "Bjoern Peters") -AnnotationAssertion( "Bjoern Peters") -AnnotationAssertion(rdfs:label "categorical label") -SubClassOf( ) - -# Class: (questionnaire) - -AnnotationAssertion( "questionnaire") -AnnotationAssertion( ) -AnnotationAssertion( "A document with a set of printed or written questions with a choice of answers, devised for the purposes of a survey or statistical study."@en) -AnnotationAssertion( "JT: It plays a role in collecting data that could be fleshed out more; but I'm thinking it is, in itself, an edited document. -JZ: based on textual definition of edited document, it can be defined as N&S. I prefer to leave questionnaire as a document now. We can add more restrictions in the future and use that to determine it is an edited document or not."@en) -AnnotationAssertion( "Need to clarify if this is a document or a directive information entity (or what their connection is))") -AnnotationAssertion( "PERSON: Jessica Turner"@en) -AnnotationAssertion( "Merriam-Webster"@en) -AnnotationAssertion(rdfs:label "questionnaire") -SubClassOf( ) - -# Class: (categorical value specification) - -AnnotationAssertion( "categorical value specification") -AnnotationAssertion( ) -AnnotationAssertion( "A value specification that is specifies one category out of a fixed number of nominal categories") -AnnotationAssertion( "PERSON:Bjoern Peters") -AnnotationAssertion(rdfs:label "categorical value specification") -SubClassOf( ) - -# Class: (value specification) - -AnnotationAssertion( "value specification") -AnnotationAssertion( "The value of 'positive' in a classification scheme of \"positive or negative\"; the value of '20g' on the quantitative scale of mass.") -AnnotationAssertion( ) -AnnotationAssertion( "An information content entity that specifies a value within a classification scheme or on a quantitative scale.") -AnnotationAssertion( "This term is currently a descendant of 'information content entity', which requires that it 'is about' something. A value specification of '20g' for a measurement data item of the mass of a particular mouse 'is about' the mass of that mouse. However there are cases where a value specification is not clearly about any particular. In the future we may change 'value specification' to remove the 'is about' requirement.") -AnnotationAssertion( "PERSON:Bjoern Peters") -AnnotationAssertion(rdfs:label "value specification") -SubClassOf( ) - -# Class: (collection of specimens) - -AnnotationAssertion( "collection of specimens"@en) -AnnotationAssertion( "Blood cells collected from multiple donors over the course of a study."@en) -AnnotationAssertion( ) -AnnotationAssertion( "A material entity that has two or more specimens as its parts."@en) -AnnotationAssertion( "Details see tracker: https://sourceforge.net/p/obi/obi-terms/778/") -AnnotationAssertion( "Person: Chris Stoeckert, Jie Zheng"@en) -AnnotationAssertion( "OBIB, OBI") -AnnotationAssertion( "Biobank") -AnnotationAssertion(rdfs:label "collection of specimens"@en) -EquivalentClasses( ObjectIntersectionOf( ObjectAllValuesFrom( ))) -SubClassOf( ) - -# Class: (histologic grade according to AJCC 7th edition) - -AnnotationAssertion( "histologic grade according to AJCC 7th edition") -AnnotationAssertion( "G1:Well differentiated") -AnnotationAssertion( "G4: Undifferentiated") -AnnotationAssertion( ) -AnnotationAssertion( "A categorical value specification that is a histologic grade assigned to a tumor slide specimen according to the American Joint Committee on Cancer (AJCC) 7th Edition grading system.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "histologic grade according to AJCC 7th edition") -SubClassOf( ) - -# Class: (histologic grade according to the Fuhrman Nuclear Grading System) - -AnnotationAssertion( "histologic grade according to the Fuhrman Nuclear Grading System") -AnnotationAssertion( ) -AnnotationAssertion( "A categorical value specification that is a histologic grade assigned to a tumor slide specimen according to the Fuhrman Nuclear Grading System.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Histologic Grade (Fuhrman Nuclear Grading System)") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "histologic grade according to the Fuhrman Nuclear Grading System") -SubClassOf( ) - -# Class: (histologic grade for ovarian tumor) - -AnnotationAssertion( "histologic grade for ovarian tumor") -AnnotationAssertion( ) -AnnotationAssertion( "A categorical value specification that is a histologic grade assigned to a ovarian tumor.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "histologic grade for ovarian tumor") -SubClassOf( ) - -# Class: (histologic grade for ovarian tumor according to a two-tier grading system) - -AnnotationAssertion( "histologic grade for ovarian tumor according to a two-tier grading system") -AnnotationAssertion( ) -AnnotationAssertion( "A histologic grade for ovarian tumor that is from a two-tier histological classification of tumors.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "histologic grade for ovarian tumor according to a two-tier grading system") -SubClassOf( ) - -# Class: (histologic grade for ovarian tumor according to the World Health Organization) - -AnnotationAssertion( "histologic grade for ovarian tumor according to the World Health Organization") -AnnotationAssertion( ) -AnnotationAssertion( "A histologic grade for ovarian tumor that is from a histological classification by the World Health Organization (WHO).") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "histologic grade for ovarian tumor according to the World Health Organization") -SubClassOf( ) - -# Class: (pathologic primary tumor stage for colon and rectum according to AJCC 7th edition) - -AnnotationAssertion( "pathologic primary tumor stage for colon and rectum according to AJCC 7th edition") -AnnotationAssertion( ) -AnnotationAssertion( "A categorical value specification that is a pathologic finding about one or more characteristics of colorectal cancer following the rules of the TNM American Joint Committee on Cancer (AJCC) version 7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "pT: Pathologic spread colorectal primary tumor (AJCC 7th Edition)") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pathologic primary tumor stage for colon and rectum according to AJCC 7th edition") -SubClassOf( ) - -# Class: (pathologic primary tumor stage for lung according to AJCC 7th edition) - -AnnotationAssertion( "pathologic primary tumor stage for lung according to AJCC 7th edition") -AnnotationAssertion( ) -AnnotationAssertion( "A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM American Joint Committee on Cancer (AJCC) version 7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "pT: Pathologic spread lung primary tumor (AJCC 7th Edition)") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pathologic primary tumor stage for lung according to AJCC 7th edition") -SubClassOf( ) - -# Class: (pathologic primary tumor stage for kidney according to AJCC 7th edition) - -AnnotationAssertion( "pathologic primary tumor stage for kidney according to AJCC 7th edition") -AnnotationAssertion( ) -AnnotationAssertion( "A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "pT: Pathologic spread kidney primary tumor (AJCC 7th Edition)") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pathologic primary tumor stage for kidney according to AJCC 7th edition") -SubClassOf( ) - -# Class: (pathologic primary tumor stage for ovary according to AJCC 7th edition) - -AnnotationAssertion( "pathologic primary tumor stage for ovary according to AJCC 7th edition") -AnnotationAssertion( ) -AnnotationAssertion( "A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "pT: Pathologic spread ovarian primary tumor (AJCC 7th Edition)") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pathologic primary tumor stage for ovary according to AJCC 7th edition") -SubClassOf( ) - -# Class: (pathologic lymph node stage for colon and rectum according to AJCC 7th edition) - -AnnotationAssertion( "pathologic lymph node stage for colon and rectum according to AJCC 7th edition") -AnnotationAssertion( ) -AnnotationAssertion( "A categorical value specification that is a pathologic finding about one or more characteristics of colorectal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "pN: Pathologic spread colon lymph nodes (AJCC 7th Edition)") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pathologic lymph node stage for colon and rectum according to AJCC 7th edition") -SubClassOf( ) - -# Class: (pathologic lymph node stage for lung according to AJCC 7th edition) - -AnnotationAssertion( "pathologic lymph node stage for lung according to AJCC 7th edition") -AnnotationAssertion( ) -AnnotationAssertion( "A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "pN: Pathologic spread colon lymph nodes (AJCC 7th Edition)") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pathologic lymph node stage for lung according to AJCC 7th edition") -SubClassOf( ) - -# Class: (pathologic lymph node stage for kidney according to AJCC 7th edition) - -AnnotationAssertion( "pathologic lymph node stage for kidney according to AJCC 7th edition") -AnnotationAssertion( ) -AnnotationAssertion( "A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "pN: Pathologic spread kidney lymph nodes (AJCC 7th Edition)") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pathologic lymph node stage for kidney according to AJCC 7th edition") -SubClassOf( ) - -# Class: (pathologic lymph node stage for ovary according to AJCC 7th edition) - -AnnotationAssertion( "pathologic lymph node stage for ovary according to AJCC 7th edition") -AnnotationAssertion( ) -AnnotationAssertion( "A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "pN: Pathologic spread ovarian lymph nodes (AJCC 7th Edition)") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pathologic lymph node stage for ovary according to AJCC 7th edition") -SubClassOf( ) - -# Class: (pathologic distant metastases stage for colon according to AJCC 7th edition) - -AnnotationAssertion( "pathologic distant metastases stage for colon according to AJCC 7th edition") -AnnotationAssertion( ) -AnnotationAssertion( "A categorical value specification that is a pathologic finding about one or more characteristics of colon cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "M: colon distant metastases (AJCC 7th Edition)") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pathologic distant metastases stage for colon according to AJCC 7th edition") -SubClassOf( ) - -# Class: (pathologic distant metastases stage for lung according to AJCC 7th edition) - -AnnotationAssertion( "pathologic distant metastases stage for lung according to AJCC 7th edition") -AnnotationAssertion( ) -AnnotationAssertion( "A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "M: lung distant metastases (AJCC 7th Edition)") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pathologic distant metastases stage for lung according to AJCC 7th edition") -SubClassOf( ) - -# Class: (pathologic distant metastases stage for kidney according to AJCC 7th edition) - -AnnotationAssertion( "pathologic distant metastases stage for kidney according to AJCC 7th edition") -AnnotationAssertion( ) -AnnotationAssertion( "A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "M: kidney distant Metastases (AJCC 7th Edition)") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pathologic distant metastases stage for kidney according to AJCC 7th edition") -SubClassOf( ) - -# Class: (pathologic distant metastases stage for ovary according to AJCC 7th edition) - -AnnotationAssertion( "pathologic distant metastases stage for ovary according to AJCC 7th edition") -AnnotationAssertion( ) -AnnotationAssertion( "A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "M: ovarian distant metastases (AJCC 7th Edition)") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pathologic distant metastases stage for ovary according to AJCC 7th edition") -SubClassOf( ) - -# Class: (clinical tumor stage group according to AJCC 7th edition) - -AnnotationAssertion( "clinical tumor stage group according to AJCC 7th edition") -AnnotationAssertion( ) -AnnotationAssertion( "A categorical value specification that is an assessment of the stage of a cancer according to the American Joint Committee on Cancer (AJCC) v7 staging systems.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Clinical tumor stage group (AJCC 7th Edition)") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "clinical tumor stage group according to AJCC 7th edition") -SubClassOf( ) - -# Class: (International Federation of Gynecology and Obstetrics cervical cancer stage value specification) - -AnnotationAssertion( "International Federation of Gynecology and Obstetrics cervical cancer stage value specification") -AnnotationAssertion( ) -AnnotationAssertion( "A categorical value specification that is an assessment of the stage of a gynecologic cancer according to the International Federation of Gynecology and Obstetrics (FIGO) staging systems.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Clinical FIGO stage") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "International Federation of Gynecology and Obstetrics cervical cancer stage value specification") -SubClassOf( ) - -# Class: (International Federation of Gynecology and Obstetrics ovarian cancer stage value specification) - -AnnotationAssertion( "International Federation of Gynecology and Obstetrics ovarian cancer stage value specification") -AnnotationAssertion( ) -AnnotationAssertion( "A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the FIGO classification system.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Pathologic Tumor Stage Grouping for ovarian cancer (FIGO)") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "International Federation of Gynecology and Obstetrics ovarian cancer stage value specification") -SubClassOf( ) - -# Class: (performance status value specification) - -AnnotationAssertion( "performance status value specification") -AnnotationAssertion( ) -AnnotationAssertion( "A categorical value specification that is an assessment of a participant's performance status (general well-being and activities of daily life).") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Performance Status Scale") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Performance_status") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "performance status value specification") -SubClassOf( ) - -# Class: (Eastern Cooperative Oncology Group score value specification) - -AnnotationAssertion( "Eastern Cooperative Oncology Group score value specification") -AnnotationAssertion( ) -AnnotationAssertion( "A performance status value specification designed by the Eastern Cooperative Oncology Group to assess disease progression and its affect on the daily living abilities of the patient.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "ECOG score") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Eastern Cooperative Oncology Group score value specification") -SubClassOf( ) - -# Class: (Karnofsky score vaue specification) - -AnnotationAssertion( "Karnofsky score vaue specification") -AnnotationAssertion( ) -AnnotationAssertion( "A performance status value specification designed for classifying patients 16 years of age or older by their functional impairment.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Karnofsky Score") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Karnofsky score vaue specification") -SubClassOf( ) - -# Class: (material supplier) - -AnnotationAssertion( "material supplier") -AnnotationAssertion( ) -AnnotationAssertion( "A person or organization that provides material supplies to other people or organizations.") -AnnotationAssertion( "Rebecca Jackson") -AnnotationAssertion( "https://github.com/obi-ontology/obi/issues/1289") -AnnotationAssertion(rdfs:label "material supplier") -EquivalentClasses( ObjectIntersectionOf(ObjectUnionOf( ) ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (organism) - -AnnotationAssertion( "organism"@en) -AnnotationAssertion( "animal"@en) -AnnotationAssertion( "fungus"@en) -AnnotationAssertion( "plant"@en) -AnnotationAssertion( "virus"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs."@en) -AnnotationAssertion( "10/21/09: This is a placeholder term, that should ideally be imported from the NCBI taxonomy, but the high level hierarchy there does not suit our needs (includes plasmids and 'other organisms')") -AnnotationAssertion( "13-02-2009: -OBI doesn't take position as to when an organism starts or ends being an organism - e.g. sperm, foetus. -This issue is outside the scope of OBI.") -AnnotationAssertion( "GROUP: OBI Biomaterial Branch") -AnnotationAssertion( "WEB: http://en.wikipedia.org/wiki/Organism"@en) -AnnotationAssertion(rdfs:label "organism"@en) -EquivalentClasses( ObjectUnionOf( )) -SubClassOf( ) - -# Class: (specimen) - -AnnotationAssertion( "specimen"@en) -AnnotationAssertion( "Biobanking of blood taken and stored in a freezer for potential future investigations stores specimen.") -AnnotationAssertion( ) -AnnotationAssertion( "A material entity that has the specimen role."@en) -AnnotationAssertion( "Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation.") -AnnotationAssertion( "PERSON: James Malone") -AnnotationAssertion( "PERSON: Philippe Rocca-Serra") -AnnotationAssertion( "GROUP: OBI Biomaterial Branch"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "specimen"@en) -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (data transformation) - -AnnotationAssertion( "data transformation"@en) -AnnotationAssertion( "The application of a clustering protocol to microarray data or the application of a statistical testing method on a primary data set to determine a p-value.") -AnnotationAssertion( ) -AnnotationAssertion( "A planned process that produces output data from input data."@en) -AnnotationAssertion( "Elisabetta Manduchi"@en) -AnnotationAssertion( "Helen Parkinson"@en) -AnnotationAssertion( "James Malone"@en) -AnnotationAssertion( "Melanie Courtot"@en) -AnnotationAssertion( "Richard Scheuermann"@en) -AnnotationAssertion( "Ryan Brinkman"@en) -AnnotationAssertion( "Tina Hernandez-Boussard"@en) -AnnotationAssertion( "Philippe Rocca-Serra") -AnnotationAssertion( "data analysis"@en) -AnnotationAssertion( "data processing"@en) -AnnotationAssertion( "Branch editors"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "data transformation"@en) -EquivalentClasses( ObjectSomeValuesFrom( )) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) -SubClassOf( ObjectAllValuesFrom( )) - -# Class: (leave one out cross validation method) - -AnnotationAssertion( "leave one out cross validation method"@en) -AnnotationAssertion( "The authors conducted leave-one-out cross validation to estimate the strength and accuracy of the differentially expressed filtered genes. http://bioinformatics.oxfordjournals.org/cgi/content/abstract/19/3/368") -AnnotationAssertion( ) -AnnotationAssertion( "is a data transformation : leave-one-out cross-validation (LOOCV) involves using a single observation from the original sample as the validation data, and the remaining observations as the training data. This is repeated such that each observation in the sample is used once as the validation data") -AnnotationAssertion( "2009-11-10. Tracker: https://sourceforge.net/tracker/?func=detail&aid=2893049&group_id=177891&atid=886178") -AnnotationAssertion( "Person:Helen Parkinson") -AnnotationAssertion(rdfs:label "leave one out cross validation method"@en) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (k-means clustering) - -AnnotationAssertion( "k-means clustering"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A k-means clustering is a data transformation which achieves a class discovery or partitioning objective, which takes as input a collection of objects (represented as points in multidimensional space) and which partitions them into a specified number k of clusters. The algorithm attempts to find the centers of natural clusters in the data. The most common form of the algorithm starts by partitioning the input points into k initial sets, either at random or using some heuristic data. It then calculates the mean point, or centroid, of each set. It constructs a new partition by associating each point with the closest centroid. Then the centroids are recalculated for the new clusters, and the algorithm repeated by alternate applications of these two steps until convergence, which is obtained when the points no longer switch clusters (or alternatively centroids are no longer changed)."@en) -AnnotationAssertion( "James Malone"@en) -AnnotationAssertion( "Elisabetta Manduchi") -AnnotationAssertion( "Philippe Rocca-Serra") -AnnotationAssertion( "WEB: http://en.wikipedia.org/wiki/K-means"@en) -AnnotationAssertion(rdfs:label "k-means clustering"@en) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) - -# Class: (hierarchical clustering) - -AnnotationAssertion( "hierarchical clustering"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A hierarchical clustering is a data transformation which achieves a class discovery objective, which takes as input data item and builds a hierarchy of clusters. The traditional representation of this hierarchy is a tree (visualized by a dendrogram), with the individual input objects at one end (leaves) and a single cluster containing every object at the other (root)."@en) -AnnotationAssertion( "James Malone"@en) -AnnotationAssertion( "WEB: http://en.wikipedia.org/wiki/Data_clustering#Hierarchical_clustering"@en) -AnnotationAssertion(rdfs:label "hierarchical clustering"@en) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) - -# Class: (dimensionality reduction) - -AnnotationAssertion( "dimensionality reduction"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A dimensionality reduction is data partitioning which transforms each input m-dimensional vector (x_1, x_2, ..., x_m) into an output n-dimensional vector (y_1, y_2, ..., y_n), where n is smaller than m."@en) -AnnotationAssertion( "Elisabetta Manduchi"@en) -AnnotationAssertion( "James Malone"@en) -AnnotationAssertion( "Melanie Courtot"@en) -AnnotationAssertion( "Philippe Rocca-Serra") -AnnotationAssertion( "data projection") -AnnotationAssertion( "PERSON: Elisabetta Manduchi"@en) -AnnotationAssertion( "PERSON: James Malone"@en) -AnnotationAssertion( "PERSON: Melanie Courtot"@en) -AnnotationAssertion(rdfs:label "dimensionality reduction"@en) -SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) - -# Class: (principal components analysis dimensionality reduction) - -AnnotationAssertion( "principal components analysis dimensionality reduction"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A principal components analysis dimensionality reduction is a dimensionality reduction achieved by applying principal components analysis and by keeping low-order principal components and excluding higher-order ones."@en) -AnnotationAssertion( "Elisabetta Manduchi"@en) -AnnotationAssertion( "James Malone"@en) -AnnotationAssertion( "Melanie Courtot"@en) -AnnotationAssertion( "Philippe Rocca-Serra") -AnnotationAssertion( "pca data reduction"@en) -AnnotationAssertion( "PERSON: Elisabetta Manduchi"@en) -AnnotationAssertion( "PERSON: James Malone"@en) -AnnotationAssertion( "PERSON: Melanie Courtot"@en) -AnnotationAssertion(rdfs:label "principal components analysis dimensionality reduction"@en) -SubClassOf( ) - -# Class: (data visualization) - -AnnotationAssertion( "data visualization") -AnnotationAssertion( "Generation of a heatmap from a microarray dataset") -AnnotationAssertion( ) -AnnotationAssertion( "A planned process with the objective to graphically represent some data by inputing the data and outputting images, diagrams or animations."@en) -AnnotationAssertion( "Elisabetta Manduchi"@en) -AnnotationAssertion( "James Malone"@en) -AnnotationAssertion( "Melanie Courtot"@en) -AnnotationAssertion( "Tina Boussard"@en) -AnnotationAssertion( "visualization"@en) -AnnotationAssertion( "data encoding as image") -AnnotationAssertion( "PERSON: Elisabetta Manduchi"@en) -AnnotationAssertion( "PERSON: James Malone"@en) -AnnotationAssertion( "PERSON: Melanie Courtot"@en) -AnnotationAssertion( "PERSON: Tina Boussard"@en) -AnnotationAssertion( "Possible future hierarchy might include this: -information_encoding ->data_encoding ->>image_encoding") -AnnotationAssertion(rdfs:label "data visualization"@en) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( ObjectUnionOf( ))) -SubClassOf( ObjectAllValuesFrom( )) -SubClassOf( ObjectAllValuesFrom( ObjectUnionOf( ))) - -# Class: (data transformation objective) - -AnnotationAssertion( "data transformation objective"@en) -AnnotationAssertion( "normalize objective"@en) -AnnotationAssertion( ) -AnnotationAssertion( "An objective specification to transformation input data into output data"@en) -AnnotationAssertion( "Modified definition in 2013 Philly OBI workshop") -AnnotationAssertion( "James Malone"@en) -AnnotationAssertion( "PERSON: James Malone"@en) -AnnotationAssertion(rdfs:label "data transformation objective"@en) -SubClassOf( ) - -# Class: (partitioning data transformation) - -AnnotationAssertion( "partitioning data transformation"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A partitioning data transformation is a data transformation that has objective partitioning."@en) -AnnotationAssertion( "James Malone") -AnnotationAssertion( "PERSON: James Malone"@en) -AnnotationAssertion(rdfs:label "partitioning data transformation"@en) -EquivalentClasses( ObjectSomeValuesFrom( )) -SubClassOf( ) - -# Class: (partitioning objective) - -AnnotationAssertion( "partitioning objective"@en) -AnnotationAssertion( "A k-means clustering which has partitioning objective is a data transformation in which the input data is partitioned into k output sets."@en) -AnnotationAssertion( ) -AnnotationAssertion( "A partitioning objective is a data transformation objective where the aim is to generate a collection of disjoint non-empty subsets whose union equals a non-empty input set."@en) -AnnotationAssertion( "James Malone"@en) -AnnotationAssertion( "Elisabetta Manduchi") -AnnotationAssertion( "PERSON: Elisabetta Manduchi") -AnnotationAssertion(rdfs:label "partitioning objective"@en) -SubClassOf( ) - -# Class: (class discovery data transformation) - -AnnotationAssertion( "class discovery data transformation"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A class discovery data transformation (sometimes called unsupervised classification) is a data transformation that has objective class discovery."@en) -AnnotationAssertion( "James Malone") -AnnotationAssertion( "clustering data transformation") -AnnotationAssertion( "unsupervised classification data transformation") -AnnotationAssertion( "PERSON: James Malone"@en) -AnnotationAssertion(rdfs:label "class discovery data transformation"@en) -EquivalentClasses( ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ) - -# Class: (class discovery objective) - -AnnotationAssertion( "class discovery objective"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A class discovery objective (sometimes called unsupervised classification) is a data transformation objective where the aim is to organize input data (typically vectors of attributes) into classes, where the number of classes and their specifications are not known a priori. Depending on usage, the class assignment can be definite or probabilistic."@en) -AnnotationAssertion( "James Malone"@en) -AnnotationAssertion( "discriminant analysis objective"@en) -AnnotationAssertion( "unsupervised classification objective"@en) -AnnotationAssertion( "clustering objective") -AnnotationAssertion( "PERSON: Elisabetta Manduchi") -AnnotationAssertion( "PERSON: James Malone") -AnnotationAssertion(rdfs:label "class discovery objective"@en) -SubClassOf( ) - -# Class: (class prediction objective) - -AnnotationAssertion( "class prediction objective"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A class prediction objective (sometimes called supervised classification) is a data transformation objective where the aim is to create a predictor from training data through a machine learning technique. The training data consist of pairs of objects (typically vectors of attributes) and -class labels for these objects. The resulting predictor can be used to attach class labels to any valid novel input object. Depending on usage, the prediction can be definite or probabilistic. A classification is learned from the training data and can then be tested on test data."@en) -AnnotationAssertion( "James Malone"@en) -AnnotationAssertion( "supervised classification objective"@en) -AnnotationAssertion( "classification objective") -AnnotationAssertion( "PERSON: Elisabetta Manduchi") -AnnotationAssertion( "PERSON: James Malone") -AnnotationAssertion(rdfs:label "class prediction objective"@en) -SubClassOf( ) - -# Class: (cross validation objective) - -AnnotationAssertion( "cross validation objective"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A cross validation objective is a data transformation objective in which the aim is to partition a sample of data into subsets such that the analysis is initially performed on a single subset, while the other subset(s) are retained for subsequent use in confirming and validating the initial analysis."@en) -AnnotationAssertion( "James Malone"@en) -AnnotationAssertion( "rotation estimation objective"@en) -AnnotationAssertion( "WEB: http://en.wikipedia.org/wiki/Cross_validation") -AnnotationAssertion(rdfs:label "cross validation objective"@en) -SubClassOf( ) - -# Class: (clustered data visualization) - -AnnotationAssertion( "clustered data visualization") -AnnotationAssertion( ) -AnnotationAssertion( "A data visualization which has input of a clustered data set and produces an output of a report graph which is capable of rendering data of this type.") -AnnotationAssertion( "James Malone") -AnnotationAssertion(rdfs:label "clustered data visualization") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( ObjectUnionOf( ))) -SubClassOf( ObjectAllValuesFrom( )) - -# Class: (length unit) - -AnnotationAssertion( "length unit") -AnnotationAssertion( "A unit which is a standard measure of the distance between two points.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "length unit") -SubClassOf( ) - -# Class: (mass unit) - -AnnotationAssertion( "mass unit") -AnnotationAssertion( "A unit which is a standard measure of the amount of matter/energy of a physical object.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "mass unit") -SubClassOf( ) - -# Class: (time unit) - -AnnotationAssertion( "time unit") -AnnotationAssertion( "A unit which is a standard measure of the dimension in which events occur in sequence.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "time unit") -SubClassOf( ) - -# Class: (temperature unit) - -AnnotationAssertion( "temperature unit") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "temperature unit") -SubClassOf( ) - -# Class: (substance unit) - -AnnotationAssertion( "substance unit") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "substance unit") -SubClassOf( ) - -# Class: (concentration unit) - -AnnotationAssertion( "concentration unit") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "concentration unit") -SubClassOf( ) - -# Class: (volume unit) - -AnnotationAssertion( "volume unit") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "volume unit") -SubClassOf( ) - -# Class: (frequency unit) - -AnnotationAssertion( "frequency unit") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "frequency unit") -SubClassOf( ) - -# Class: (volumetric flow rate unit) - -AnnotationAssertion( "volumetric flow rate unit") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "volumetric flow rate unit") -SubClassOf( ) - -# Class: (rate unit) - -AnnotationAssertion( "rate unit") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "rate unit") -SubClassOf( ) - - -############################ -# Named Individuals -############################ - -# Individual: (example to be eventually removed) - -AnnotationAssertion( "example to be eventually removed"@en) -AnnotationAssertion(rdfs:label "example to be eventually removed"@en) -ClassAssertion( ) - -# Individual: (failed exploratory term) - -AnnotationAssertion( "failed exploratory term"@en) -AnnotationAssertion( "The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job"@en) -AnnotationAssertion( "Person:Alan Ruttenberg"@en) -AnnotationAssertion(rdfs:label "failed exploratory term"@en) -ClassAssertion( ) - -# Individual: (metadata complete) - -AnnotationAssertion( "metadata complete"@en) -AnnotationAssertion( "Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete."@en) -AnnotationAssertion(rdfs:label "metadata complete"@en) -ClassAssertion( ) - -# Individual: (organizational term) - -AnnotationAssertion( "organizational term"@en) -AnnotationAssertion( "Term created to ease viewing/sort terms for development purpose, and will not be included in a release"@en) -AnnotationAssertion( "PERSON:Alan Ruttenberg") -AnnotationAssertion(rdfs:label "organizational term"@en) -ClassAssertion( ) - -# Individual: (ready for release) - -AnnotationAssertion( "ready for release"@en) -AnnotationAssertion( "Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking \"ready_for_release\" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed \"ready_for_release\" will also derived from a chain of ancestor classes that are also \"ready_for_release.\""@en) -AnnotationAssertion(rdfs:label "ready for release"@en) -ClassAssertion( ) - -# Individual: (metadata incomplete) - -AnnotationAssertion( "metadata incomplete"@en) -AnnotationAssertion( "Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors."@en) -AnnotationAssertion(rdfs:label "metadata incomplete"@en) -ClassAssertion( ) - -# Individual: (uncurated) - -AnnotationAssertion( "uncurated"@en) -AnnotationAssertion( "Nothing done yet beyond assigning a unique class ID and proposing a preferred term."@en) -AnnotationAssertion(rdfs:label "uncurated"@en) -ClassAssertion( ) - -# Individual: (pending final vetting) - -AnnotationAssertion( "pending final vetting"@en) -AnnotationAssertion( "All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor."@en) -AnnotationAssertion(rdfs:label "pending final vetting"@en) -ClassAssertion( ) - -# Individual: (placeholder removed) - -AnnotationAssertion( "placeholder removed"@en) -AnnotationAssertion(rdfs:label "placeholder removed"@en) -ClassAssertion( ) - -# Individual: (terms merged) - -AnnotationAssertion( "terms merged"@en) -AnnotationAssertion( "An editor note should explain what were the merged terms and the reason for the merge."@en) -AnnotationAssertion(rdfs:label "terms merged"@en) -ClassAssertion( ) - -# Individual: (term imported) - -AnnotationAssertion( "term imported"@en) -AnnotationAssertion( "This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use."@en) -AnnotationAssertion(rdfs:label "term imported"@en) -ClassAssertion( ) - -# Individual: (term split) - -AnnotationAssertion( "term split"@en) -AnnotationAssertion( "This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created."@en) -AnnotationAssertion(rdfs:label "term split"@en) -ClassAssertion( ) - -# Individual: (universal) - -AnnotationAssertion( "universal"@en) -AnnotationAssertion( "Hard to give a definition for. Intuitively a \"natural kind\" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents."@en) -AnnotationAssertion( "Alan Ruttenberg"@en) -AnnotationAssertion( "A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf"@en) -AnnotationAssertion(rdfs:label "universal"@en) -ClassAssertion( ) - -# Individual: (defined class) - -AnnotationAssertion( "defined class"@en) -AnnotationAssertion( "A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal"@en) -AnnotationAssertion( "\"definitions\", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal."@en) -AnnotationAssertion( "Alan Ruttenberg"@en) -AnnotationAssertion(rdfs:label "defined class"@en) -ClassAssertion( ) - -# Individual: (named class expression) - -AnnotationAssertion( "named class expression"@en) -AnnotationAssertion( "A named class expression is a logical expression that is given a name. The name can be used in place of the expression."@en) -AnnotationAssertion( "named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions"@en) -AnnotationAssertion( "Alan Ruttenberg"@en) -AnnotationAssertion(rdfs:label "named class expression"@en) -ClassAssertion( ) - -# Individual: (to be replaced with external ontology term) - -AnnotationAssertion( "to be replaced with external ontology term"@en) -AnnotationAssertion( "Terms with this status should eventually replaced with a term from another ontology."@en) -AnnotationAssertion( "Alan Ruttenberg"@en) -AnnotationAssertion( "group:OBI"@en) -AnnotationAssertion(rdfs:label "to be replaced with external ontology term"@en) -ClassAssertion( ) - -# Individual: (requires discussion) - -AnnotationAssertion( "requires discussion"@en) -AnnotationAssertion( "A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues."@en) -AnnotationAssertion( "Alan Ruttenberg"@en) -AnnotationAssertion( "group:OBI"@en) -AnnotationAssertion(rdfs:label "requires discussion"@en) -ClassAssertion( ) - -# Individual: (Transformation-ML) - -AnnotationAssertion( "Transformation-ML"@en) -AnnotationAssertion( "Transformation-ML file describing parameter transformations used in a GvHD experiment."@en) -AnnotationAssertion( ) -AnnotationAssertion( "Transformation-ML is a format standard of a digital entity that is conformant with the Transformation-ML standard.(http://wiki.ficcs.org/ficcs/Transformation-ML?action=AttachFile&do=get&target=Transformation-ML_v1.0.26.pdf)"@en) -AnnotationAssertion( "person:Jennifer Fostel"@en) -AnnotationAssertion( "web-page:http://wiki.ficcs.org/ficcs/Transformation-ML?action=AttachFile&do=get&target=Transformation-ML_v1.0.26.pdf") -AnnotationAssertion(rdfs:label "Transformation-ML"@en) -ClassAssertion( ) - -# Individual: (ACS) - -AnnotationAssertion( "ACS"@en) -AnnotationAssertion( "d06.acs, ACS1.0 data file of well D06 of plate 2 of part 1 of a GvHD experiment."@en) -AnnotationAssertion( ) -AnnotationAssertion( "ACS is a format standard of a digital entity that is conformant with the Analytical Cytometry Standard. (http://www.isac-net.org/content/view/607/150/)"@en) -AnnotationAssertion( "person:Jennifer Fostel"@en) -AnnotationAssertion( "web-page:http://www.isac-net.org/content/view/607/150/") -AnnotationAssertion(rdfs:label "ACS"@en) -ClassAssertion( ) - -# Individual: (XML) - -AnnotationAssertion( "XML"@en) -AnnotationAssertion( "RDF/XML file, OWL file, Compensation-ML file, WSDL document, SVG document"@en) -AnnotationAssertion( ) -AnnotationAssertion( "XML is a format standard of a digital entity that is conformant with the W3C Extensible Markup Language Recommendation.(http://www.w3.org/XML/)"@en) -AnnotationAssertion( "person:Jennifer Fostel"@en) -AnnotationAssertion( "web-page:http://www.w3.org/XML/") -AnnotationAssertion(rdfs:label "XML"@en) -ClassAssertion( ) - -# Individual: (RDF) - -AnnotationAssertion( "RDF"@en) -AnnotationAssertion( "A FOAF file, a SKOS file, an OWL file."@en) -AnnotationAssertion( ) -AnnotationAssertion( "RDF is a format standard of a digital entity that is conformant with the W3C Resource Description Framework RDF/XML Syntax specification.(http://www.w3.org/RDF/)"@en) -AnnotationAssertion( "person:Jennifer Fostel"@en) -AnnotationAssertion( "web-page:http://www.w3.org/RDF/") -AnnotationAssertion(rdfs:label "RDF"@en) -ClassAssertion( ) - -# Individual: (zip) - -AnnotationAssertion( "zip"@en) -AnnotationAssertion( "MagicDraw MDZIP archive, Java JAR file."@en) -AnnotationAssertion( ) -AnnotationAssertion( "zip is a format standard of a digital entity that is conformant with the PKWARE .ZIP file format specification (http://www.pkware.com/index.php?option=com_content&task=view&id=59&Itemid=103/)"@en) -AnnotationAssertion( "person:Jennifer Fostel"@en) -AnnotationAssertion( "web-page:http://www.pkware.com/index.php?option=com_content&task=view&id=59&Itemid=103/") -AnnotationAssertion(rdfs:label "zip"@en) -ClassAssertion( ) - -# Individual: (tar) - -AnnotationAssertion( "tar"@en) -AnnotationAssertion( "Example.tar file."@en) -AnnotationAssertion( ) -AnnotationAssertion( "tar is a format standard of a digital entity that is conformant with the tape archive file format as standardized by POSIX.1-1998, POSIX.1-2001, or any other tar format compliant with the GNU tar specification. (http://www.gnu.org/software/tar/manual/)"@en) -AnnotationAssertion( "person:Jennifer Fostel"@en) -AnnotationAssertion( "web-page:http://www.gnu.org/software/tar/manual/") -AnnotationAssertion(rdfs:label "tar"@en) -ClassAssertion( ) - -# Individual: (FCS) - -AnnotationAssertion( "FCS"@en) -AnnotationAssertion( "d01.fcs, FCS3 data file of well D06 of plate 2 of part 1 of a GvHD experiment."@en) -AnnotationAssertion( ) -AnnotationAssertion( "FCS is a format standard of a digital entity that is conformant with the Flow Cytometry Data File Standard.(http://www.fcspress.com/)"@en) -AnnotationAssertion( "person:Jennifer Fostel"@en) -AnnotationAssertion( "web-page:http://www.fcspress.com/") -AnnotationAssertion(rdfs:label "FCS"@en) -ClassAssertion( ) - -# Individual: (Compensation-ML) - -AnnotationAssertion( "Compensation-ML"@en) -AnnotationAssertion( "compfoo.xml, Compensation-ML file describing compensation used in a GvHD experiment"@en) -AnnotationAssertion( ) -AnnotationAssertion( "Compensation-ML is a format standard of a digital entity that is conformant with the Compensation-ML standard. (http://wiki.ficcs.org/ficcs/Compensation-ML?action=AttachFile&do=get&target=Compensation-ML_v1.0.24.pdf)"@en) -AnnotationAssertion( "person:Jennifer Fostel"@en) -AnnotationAssertion( "web-page:http://wiki.ficcs.org/ficcs/Compensation-ML?action=AttachFile&do=get&target=Compensation-ML_v1.0.24.pdf") -AnnotationAssertion(rdfs:label "Compensation-ML"@en) -ClassAssertion( ) - -# Individual: (Gating-ML) - -AnnotationAssertion( "Gating-ML"@en) -AnnotationAssertion( "foogate.xml, Gating-ML file describing gates used in a GvHD experiment."@en) -AnnotationAssertion( ) -AnnotationAssertion( "Gating-ML is a format standard of a digital entity that is conformant with the Gating-ML standard. (http://www.flowcyt.org/gating/)"@en) -AnnotationAssertion( "person:Jennifer Fostel"@en) -AnnotationAssertion( "web-page:http://www.flowcyt.org/gating/") -AnnotationAssertion(rdfs:label "Gating-ML"@en) -ClassAssertion( ) - -# Individual: (OWL) - -AnnotationAssertion( "OWL"@en) -AnnotationAssertion( "OBI ontology file, Basic Formal Ontology file, BIRNLex file, BioPAX file."@en) -AnnotationAssertion( ) -AnnotationAssertion( "OWL is a format standard of a digital entity that is conformant with the W3C Web Ontology Language specification.(http://www.w3.org/2004/OWL/)"@en) -AnnotationAssertion( "person:Jennifer Fostel"@en) -AnnotationAssertion( "web-page:http://www.w3.org/2004/OWL/") -AnnotationAssertion(rdfs:label "OWL"@en) -ClassAssertion( ) - -# Individual: (Affymetrix) - -AnnotationAssertion( "Affymetrix") -AnnotationAssertion( "Affymetrix supplied microarray") -AnnotationAssertion( ) -AnnotationAssertion( "An organization which supplies technology, tools and protocols for use in high throughput applications") -AnnotationAssertion(rdfs:label "Affymetrix") -ClassAssertion( ) -ClassAssertion( ) - -# Individual: (Thermo) - -AnnotationAssertion( "Thermo") -AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra") -AnnotationAssertion(rdfs:label "Thermo") -ClassAssertion( ) - -# Individual: (Waters) - -AnnotationAssertion( "Waters") -AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra") -AnnotationAssertion(rdfs:label "Waters") -ClassAssertion( ) - -# Individual: (BIO-RAD) - -AnnotationAssertion( "BIO-RAD") -AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra") -AnnotationAssertion(rdfs:label "BIO-RAD") -ClassAssertion( ) - -# Individual: (GenePattern hierarchical clustering) - -AnnotationAssertion( "GenePattern hierarchical clustering") -AnnotationAssertion( ) -AnnotationAssertion( "James Malone") -AnnotationAssertion(rdfs:label "GenePattern hierarchical clustering") -ClassAssertion( ) - -# Individual: (Ambion) - -AnnotationAssertion( "Ambion") -AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra") -AnnotationAssertion(rdfs:label "Ambion") -ClassAssertion( ) - -# Individual: (Helicos) - -AnnotationAssertion( "Helicos") -AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra") -AnnotationAssertion(rdfs:label "Helicos") -ClassAssertion( ) - -# Individual: (Roche) - -AnnotationAssertion( "Roche") -AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra") -AnnotationAssertion(rdfs:label "Roche") -ClassAssertion( ) - -# Individual: (Illumina) - -AnnotationAssertion( "Illumina") -AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra") -AnnotationAssertion(rdfs:label "Illumina") -ClassAssertion( ) - -# Individual: (GenePattern PCA) - -AnnotationAssertion( "GenePattern PCA") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "GenePattern PCA") -ClassAssertion( ) - -# Individual: (GenePattern module SVM) - -AnnotationAssertion( "GenePattern module SVM") -AnnotationAssertion( ) -AnnotationAssertion( "GenePattern module SVM is a GenePattern software module which is used to run a support vector machine data transformation.") -AnnotationAssertion( "James Malone") -AnnotationAssertion( "Ryan Brinkman") -AnnotationAssertion(rdfs:label "GenePattern module SVM") -ClassAssertion( ) -ObjectPropertyAssertion( ) - -# Individual: (GenePattern k-nearest neighbors) - -AnnotationAssertion( "GenePattern k-nearest neighbors") -AnnotationAssertion( ) -AnnotationAssertion( "James Malone") -AnnotationAssertion(rdfs:label "GenePattern k-nearest neighbors") -ClassAssertion( ) - -# Individual: (GenePattern LOOCV) - -AnnotationAssertion( "GenePattern LOOCV") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "GenePattern LOOCV") -ClassAssertion( ) - -# Individual: (GenePattern k-means clustering) - -AnnotationAssertion( "GenePattern k-means clustering") -AnnotationAssertion( ) -AnnotationAssertion( "James Malone") -AnnotationAssertion(rdfs:label "GenePattern k-means clustering") -ClassAssertion( ) - -# Individual: (Agilent) - -AnnotationAssertion( "Agilent") -AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra") -AnnotationAssertion(rdfs:label "Agilent") -ClassAssertion( ) - -# Individual: (GenePattern module KMeansClustering) - -AnnotationAssertion( "GenePattern module KMeansClustering") -AnnotationAssertion( ) -AnnotationAssertion( "GenePattern module KMeansClustering is a GenePattern software module which is used to perform a k Means clustering data transformation.") -AnnotationAssertion( "James Malone") -AnnotationAssertion( "PERSON: James Malone") -AnnotationAssertion(rdfs:label "GenePattern module KMeansClustering") -ClassAssertion( ) -ObjectPropertyAssertion( ) - -# Individual: (GenePattern CART) - -AnnotationAssertion( "GenePattern CART") -AnnotationAssertion( ) -AnnotationAssertion( "James Malone") -AnnotationAssertion(rdfs:label "GenePattern CART") -ClassAssertion( ) - -# Individual: (GenePattern module CARTXValidation) - -AnnotationAssertion( "GenePattern module CARTXValidation") -AnnotationAssertion( ) -AnnotationAssertion( "GenePattern module CARTXValidation is a GenePattern software module which uses a CART decision tree induction with a leave one out cross validation data transformations.") -AnnotationAssertion(rdfs:label "GenePattern module CARTXValidation") -ClassAssertion( ) -ObjectPropertyAssertion( ) -ObjectPropertyAssertion( ) - -# Individual: (Li-Cor) - -AnnotationAssertion( "Li-Cor") -AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra") -AnnotationAssertion(rdfs:label "Li-Cor") -ClassAssertion( ) - -# Individual: (Bruker Corporation) - -AnnotationAssertion( "Bruker Corporation") -AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra") -AnnotationAssertion(rdfs:label "Bruker Corporation") -ClassAssertion( ) - -# Individual: (GenePattern module KNNXValidation) - -AnnotationAssertion( "GenePattern module KNNXValidation") -AnnotationAssertion( ) -AnnotationAssertion( "GenePattern module KNNXValidation is a GenePattern software module which uses a k-nearest neighbours clustering with a leave one out cross validation data transformations.") -AnnotationAssertion( "James Malone") -AnnotationAssertion( "PERSON: James Malone") -AnnotationAssertion(rdfs:label "GenePattern module KNNXValidation") -ClassAssertion( ) - -# Individual: (GenePattern module PeakMatch) - -AnnotationAssertion( "GenePattern module PeakMatch") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "GenePattern module PeakMatch") -ClassAssertion( ) -ObjectPropertyAssertion( ) - -# Individual: (GenePattern module KNN) - -AnnotationAssertion( "GenePattern module KNN") -AnnotationAssertion( ) -AnnotationAssertion( "GenePattern module KNN is a GenePattern software module which perform a k-nearest neighbors data transformation.") -AnnotationAssertion( "James Malone") -AnnotationAssertion(rdfs:label "GenePattern module KNN") -ClassAssertion( ) -ObjectPropertyAssertion( ) - -# Individual: (GenePattern module HierarchicalClustering) - -AnnotationAssertion( "GenePattern module HierarchicalClustering") -AnnotationAssertion( ) -AnnotationAssertion( "GenePattern module HierarchicalClustering is a GenePattern software module which is used to perform a hierarchical clustering data transformation.") -AnnotationAssertion( "James Malone") -AnnotationAssertion( "PERSON: James Malone") -AnnotationAssertion(rdfs:label "GenePattern module HierarchicalClustering") -ClassAssertion( ) -ObjectPropertyAssertion( ) - -# Individual: (GenePattern SVM) - -AnnotationAssertion( "GenePattern SVM") -AnnotationAssertion( ) -AnnotationAssertion( "James Malone") -AnnotationAssertion(rdfs:label "GenePattern SVM") -ClassAssertion( ) - -# Individual: (Applied Biosystems) - -AnnotationAssertion( "Applied Biosystems") -AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra") -AnnotationAssertion(rdfs:label "Applied Biosystems") -ClassAssertion( ) - -# Individual: (GenePattern module PCA) - -AnnotationAssertion( "GenePattern module PCA") -AnnotationAssertion( ) -AnnotationAssertion( "GenePattern module PCA is a GenePattern software module which is used to perform a principal components analysis dimensionality reduction data transformation.") -AnnotationAssertion( "James Malone") -AnnotationAssertion( "PERSON: James Malone") -AnnotationAssertion(rdfs:label "GenePattern module PCA") -ClassAssertion( ) -ObjectPropertyAssertion( ) - -# Individual: (GenePattern peak matching) - -AnnotationAssertion( "GenePattern peak matching") -AnnotationAssertion( ) -AnnotationAssertion( "James Malone") -AnnotationAssertion( "Ryan Brinkman") -AnnotationAssertion(rdfs:label "GenePattern peak matching") -ClassAssertion( ) - -# Individual: (Bruker Daltonics) - -AnnotationAssertion( "Bruker Daltonics") -AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra") -AnnotationAssertion(rdfs:label "Bruker Daltonics") -ClassAssertion( ) - -# Individual: (GenePattern HeatMapViewer data visualization) - -AnnotationAssertion( "GenePattern HeatMapViewer data visualization") -AnnotationAssertion( ) -AnnotationAssertion( "The GenePattern process of generating Heat Maps from clustered data.") -AnnotationAssertion( "James Malone") -AnnotationAssertion(rdfs:label "GenePattern HeatMapViewer data visualization") -ClassAssertion( ) - -# Individual: (GenePattern HierarchicalClusteringViewer data visualization) - -AnnotationAssertion( "GenePattern HierarchicalClusteringViewer data visualization") -AnnotationAssertion( ) -AnnotationAssertion( "The GenePattern process of generating hierarchical clustering visualization from clustered data.") -AnnotationAssertion( "James Malone") -AnnotationAssertion(rdfs:label "GenePattern HierarchicalClusteringViewer data visualization") -ClassAssertion( ) - -# Individual: (GenePattern module HeatMapViewer) - -AnnotationAssertion( "GenePattern module HeatMapViewer") -AnnotationAssertion( ) -AnnotationAssertion( "A GenePattern software module which is used to generate a heatmap view of data.") -AnnotationAssertion( "James Malone") -AnnotationAssertion(rdfs:label "GenePattern module HeatMapViewer") -ClassAssertion( ) -ObjectPropertyAssertion( ) - -# Individual: (GenePattern module HierarchicalClusteringViewer) - -AnnotationAssertion( "GenePattern module HierarchicalClusteringViewer") -AnnotationAssertion( ) -AnnotationAssertion( "A GenePattern software module which is used to generate a view of data that has been hierarchically clustered.") -AnnotationAssertion( "James Malone") -AnnotationAssertion(rdfs:label "GenePattern module HierarchicalClusteringViewer") -ClassAssertion( ) -ObjectPropertyAssertion( ) - -# Individual: (Sysmex Corporation, Kobe, Japan) - -AnnotationAssertion( "Sysmex Corporation, Kobe, Japan") -AnnotationAssertion( ) -AnnotationAssertion( "WEB:http://www.sysmex.com/@2009/08/06") -AnnotationAssertion(rdfs:label "Sysmex Corporation, Kobe, Japan") -ClassAssertion( ) - -# Individual: (U.S. Food and Drug Administration) - -AnnotationAssertion( "U.S. Food and Drug Administration") -AnnotationAssertion( ) -AnnotationAssertion( "FDA") -AnnotationAssertion(rdfs:label "U.S. Food and Drug Administration") -ClassAssertion( ) - -# Individual: (right handed) - -AnnotationAssertion( "right handed") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "right handed") -ClassAssertion( ) - -# Individual: (ambidexterous) - -AnnotationAssertion( "ambidexterous") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "ambidexterous") -ClassAssertion( ) - -# Individual: (left handed) - -AnnotationAssertion( "left handed") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "left handed") -ClassAssertion( ) - -# Individual: (Edingburgh handedness inventory) - -AnnotationAssertion( "Edingburgh handedness inventory") -AnnotationAssertion( ) -AnnotationAssertion( "The Edinburgh Handedness Inventory is a set of questions used to assess the dominance of a person's right or left hand in everyday activities."@en) -AnnotationAssertion( "PERSON:Alan Ruttenberg") -AnnotationAssertion( "PERSON:Jessica Turner") -AnnotationAssertion( "PMID:5146491#Oldfield, R.C. (1971). The assessment and analysis of handedness: The Edinburgh inventory. Neuropsychologia, 9, 97-113") -AnnotationAssertion( "WEB:http://www.cse.yorku.ca/course_archive/2006-07/W/4441/EdinburghInventory.html") -AnnotationAssertion(rdfs:label "Edingburgh handedness inventory") -ClassAssertion( ) - -# Individual: (eBioscience) - -AnnotationAssertion( "eBioscience") -AnnotationAssertion( ) -AnnotationAssertion( "Karin Breuer") -AnnotationAssertion( "WEB:http://www.ebioscience.com/@2011/04/11") -AnnotationAssertion(rdfs:label "eBioscience") -ClassAssertion( ) - -# Individual: (Cytopeia) - -AnnotationAssertion( "Cytopeia") -AnnotationAssertion( ) -AnnotationAssertion( "Karin Breuer") -AnnotationAssertion( "WEB:http://www.cytopeia.com/@2011/04/11") -AnnotationAssertion(rdfs:label "Cytopeia") -ClassAssertion( ) - -# Individual: (Exalpha Biological) - -AnnotationAssertion( "Exalpha Biological") -AnnotationAssertion( ) -AnnotationAssertion( "Karin Breuer") -AnnotationAssertion( "WEB:http://www.exalpha.com/@2011/04/11") -AnnotationAssertion(rdfs:label "Exalpha Biological") -ClassAssertion( ) - -# Individual: (Apogee Flow Systems) - -AnnotationAssertion( "Apogee Flow Systems") -AnnotationAssertion( ) -AnnotationAssertion( "Karin Breuer") -AnnotationAssertion( "WEB:http://www.apogeeflow.com/@2011/04/11") -AnnotationAssertion(rdfs:label "Apogee Flow Systems") -ClassAssertion( ) - -# Individual: (Exbio Antibodies) - -AnnotationAssertion( "Exbio Antibodies") -AnnotationAssertion( ) -AnnotationAssertion( "Karin Breuer") -AnnotationAssertion( "WEB:http://www.exbio.cz/@2011/04/11") -AnnotationAssertion(rdfs:label "Exbio Antibodies") -ClassAssertion( ) - -# Individual: (Becton Dickinson (BD Biosciences)) - -AnnotationAssertion( "Becton Dickinson (BD Biosciences)") -AnnotationAssertion( ) -AnnotationAssertion( "Karin Breuer") -AnnotationAssertion( "WEB:http://www.bdbiosciences.com/@2011/04/11") -AnnotationAssertion(rdfs:label "Becton Dickinson (BD Biosciences)") -ClassAssertion( ) - -# Individual: (Dako Cytomation) - -AnnotationAssertion( "Dako Cytomation") -AnnotationAssertion( ) -AnnotationAssertion( "Karin Breuer") -AnnotationAssertion( "WEB:http://www.dakousa.com/@2011/04/11") -AnnotationAssertion(rdfs:label "Dako Cytomation") -ClassAssertion( ) - -# Individual: (Millipore) - -AnnotationAssertion( "Millipore") -AnnotationAssertion( ) -AnnotationAssertion( "Karin Breuer") -AnnotationAssertion( "WEB:http://www.guavatechnologies.com/@2011/04/11") -AnnotationAssertion(rdfs:label "Millipore") -ClassAssertion( ) - -# Individual: (Antigenix) - -AnnotationAssertion( "Antigenix") -AnnotationAssertion( ) -AnnotationAssertion( "Karin Breuer") -AnnotationAssertion( "WEB:http://www.antigenix.com/@2011/04/11") -AnnotationAssertion(rdfs:label "Antigenix") -ClassAssertion( ) - -# Individual: (Partec) - -AnnotationAssertion( "Partec") -AnnotationAssertion( ) -AnnotationAssertion( "Karin Breuer") -AnnotationAssertion( "WEB:http://www.partec.de/@2011/04/11") -AnnotationAssertion(rdfs:label "Partec") -ClassAssertion( ) - -# Individual: (Beckman Coulter) - -AnnotationAssertion( "Beckman Coulter") -AnnotationAssertion( ) -AnnotationAssertion( "Karin Breuer") -AnnotationAssertion( "WEB:http://www.beckmancoulter.com/@2011/04/11") -AnnotationAssertion(rdfs:label "Beckman Coulter") -ClassAssertion( ) - -# Individual: (Advanced Instruments Inc. (AI Companies)) - -AnnotationAssertion( "Advanced Instruments Inc. (AI Companies)") -AnnotationAssertion( ) -AnnotationAssertion( "Karin Breuer") -AnnotationAssertion( "WEB:http://www.aicompanies.com/@2011/04/11") -AnnotationAssertion(rdfs:label "Advanced Instruments Inc. (AI Companies)") -ClassAssertion( ) - -# Individual: (Miltenyi Biotec) - -AnnotationAssertion( "Miltenyi Biotec") -AnnotationAssertion( ) -AnnotationAssertion( "Karin Breuer") -AnnotationAssertion( "WEB:http://www.miltenyibiotec.com/@2011/04/11") -AnnotationAssertion(rdfs:label "Miltenyi Biotec") -ClassAssertion( ) - -# Individual: (AES Chemunex) - -AnnotationAssertion( "AES Chemunex") -AnnotationAssertion( ) -AnnotationAssertion( "Karin Breuer") -AnnotationAssertion( "WEB:http://www.aeschemunex.com/@2011/04/11") -AnnotationAssertion(rdfs:label "AES Chemunex") -ClassAssertion( ) - -# Individual: (Bentley Instruments) - -AnnotationAssertion( "Bentley Instruments") -AnnotationAssertion( ) -AnnotationAssertion( "Karin Breuer") -AnnotationAssertion( "WEB:http://bentleyinstruments.com/@2011/04/11") -AnnotationAssertion(rdfs:label "Bentley Instruments") -ClassAssertion( ) - -# Individual: (Invitrogen) - -AnnotationAssertion( "Invitrogen") -AnnotationAssertion( ) -AnnotationAssertion( "Karin Breuer") -AnnotationAssertion( "WEB:http://www.invitrogen.com/@2011/04/11") -AnnotationAssertion(rdfs:label "Invitrogen") -ClassAssertion( ) - -# Individual: (Luminex) - -AnnotationAssertion( "Luminex") -AnnotationAssertion( ) -AnnotationAssertion( "Karin Breuer") -AnnotationAssertion( "WEB:http://www.luminexcorp.com/@2011/04/11") -AnnotationAssertion(rdfs:label "Luminex") -ClassAssertion( ) - -# Individual: (CytoBuoy) - -AnnotationAssertion( "CytoBuoy") -AnnotationAssertion( ) -AnnotationAssertion( "Karin Breuer") -AnnotationAssertion( "WEB:http://www.cytobuoy.com/@2011/04/11") -AnnotationAssertion(rdfs:label "CytoBuoy") -ClassAssertion( ) - -# Individual: (Nimblegen) - -AnnotationAssertion( "Nimblegen") -AnnotationAssertion( ) -AnnotationAssertion( "An organization that focuses on manufacturing target enrichment probe pools for DNA sequencing.") -AnnotationAssertion( "Person: Jie Zheng") -AnnotationAssertion(rdfs:label "Nimblegen") -ClassAssertion( ) - -# Individual: (Pacific Biosciences) - -AnnotationAssertion( "Pacific Biosciences") -AnnotationAssertion( ) -AnnotationAssertion( "An organization that supplies tools for studying the synthesis and regulation of DNA, RNA and protein. It developed a powerful technology platform called single molecule real-time (SMRT) technology which enables real-time analysis of biomolecules with single molecule resolution.") -AnnotationAssertion( "Person: Jie Zheng") -AnnotationAssertion(rdfs:label "Pacific Biosciences") -ClassAssertion( ) - -# Individual: (NanoString Technologies) - -AnnotationAssertion( "NanoString Technologies") -AnnotationAssertion( ) -AnnotationAssertion( "An organization that supplies life science tools for translational research and molecular diagnostics based on a novel digital molecular barcoding technology. The NanoString platform can provide simple, multiplexed digital profiling of single molecules.") -AnnotationAssertion(rdfs:label "NanoString Technologies") -ClassAssertion( ) - -# Individual: (Thermo Fisher Scientific) - -AnnotationAssertion( "Thermo Fisher Scientific") -AnnotationAssertion( ) -AnnotationAssertion( "An organization that is an American multinational, biotechnology product development company, created in 2006 by the merger of Thermo Electron and Fisher Scientific.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Thermo_Fisher_Scientific") -AnnotationAssertion(rdfs:label "Thermo Fisher Scientific") -ClassAssertion( ) - -# Individual: (G1: Well differentiated) - -AnnotationAssertion( "G1: Well differentiated") -AnnotationAssertion( ) -AnnotationAssertion( "A histologic grade according to AJCC 7th edition indicating that the tumor cells and the organization of the tumor tissue appear close to normal.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "G1") -AnnotationAssertion( "https://www.cancer.gov/about-cancer/diagnosis-staging/prognosis/tumor-grade-fact-sheet") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "G1: Well differentiated") -ClassAssertion( ) - -# Individual: (G2: Moderately differentiated) - -AnnotationAssertion( "G2: Moderately differentiated") -AnnotationAssertion( ) -AnnotationAssertion( "A histologic grade according to AJCC 7th edition indicating that the tumor cells are moderately differentiated and reflect an intermediate grade.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "G2") -AnnotationAssertion( "https://www.cancer.gov/about-cancer/diagnosis-staging/prognosis/tumor-grade-fact-sheet") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "G2: Moderately differentiated") -ClassAssertion( ) - -# Individual: (G3: Poorly differentiated) - -AnnotationAssertion( "G3: Poorly differentiated") -AnnotationAssertion( ) -AnnotationAssertion( "A histologic grade according to AJCC 7th edition indicating that the tumor cells are poorly differentiated and do not look like normal cells and tissue.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "G3") -AnnotationAssertion( "https://www.cancer.gov/about-cancer/diagnosis-staging/prognosis/tumor-grade-fact-sheet") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "G3: Poorly differentiated") -ClassAssertion( ) - -# Individual: (G4: Undifferentiated) - -AnnotationAssertion( "G4: Undifferentiated") -AnnotationAssertion( ) -AnnotationAssertion( "A histologic grade according to AJCC 7th edition indicating that the tumor cells are undifferentiated and do not look like normal cells and tissue.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "G4") -AnnotationAssertion( "https://www.cancer.gov/about-cancer/diagnosis-staging/prognosis/tumor-grade-fact-sheet") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "G4: Undifferentiated") -ClassAssertion( ) - -# Individual: (G1 (Fuhrman)) - -AnnotationAssertion( "G1 (Fuhrman)") -AnnotationAssertion( ) -AnnotationAssertion( "A histologic grade according to the Fuhrman Nuclear Grading System indicating that nuclei are round, uniform, approximately 10um and that nucleoli are inconspicuous or absent.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Grade 1") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "G1 (Fuhrman)") -ClassAssertion( ) - -# Individual: (G2 (Fuhrman)) - -AnnotationAssertion( "G2 (Fuhrman)") -AnnotationAssertion( ) -AnnotationAssertion( "A histologic grade according to the Fuhrman Nuclear Grading System indicating that nuclei are slightly irregular, approximately 15um and nucleoli are evident.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Grade 2") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "G2 (Fuhrman)") -ClassAssertion( ) - -# Individual: (G3 (Fuhrman)) - -AnnotationAssertion( "G3 (Fuhrman)") -AnnotationAssertion( ) -AnnotationAssertion( "A histologic grade according to the Fuhrman Nuclear Grading System indicating that nuclei are very irregular, approximately 20um and nucleoli large and prominent.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Grade 3") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "G3 (Fuhrman)") -ClassAssertion( ) - -# Individual: (G4 (Fuhrman)) - -AnnotationAssertion( "G4 (Fuhrman)") -AnnotationAssertion( ) -AnnotationAssertion( "A histologic grade according to the Fuhrman Nuclear Grading System indicating that nuclei arei bizarre and multilobulated, 20um or greater and nucleoli are prominent and chromatin clumped.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Grade 4") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "G4 (Fuhrman)") -ClassAssertion( ) - -# Individual: (Low grade ovarian tumor) - -AnnotationAssertion( "Low grade ovarian tumor") -AnnotationAssertion( ) -AnnotationAssertion( "A histologic grade for ovarian tumor according to a two-tier grading system indicating that the tumor is low grade.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Low grade") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Low grade ovarian tumor") -ClassAssertion( ) - -# Individual: (High grade ovarian tumor) - -AnnotationAssertion( "High grade ovarian tumor") -AnnotationAssertion( ) -AnnotationAssertion( "A histologic grade for ovarian tumor according to a two-tier grading system indicating that the tumor is high grade.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "High grade") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "High grade ovarian tumor") -ClassAssertion( ) - -# Individual: (G1 (WHO)) - -AnnotationAssertion( "G1 (WHO)") -AnnotationAssertion( ) -AnnotationAssertion( "A histologic grade for ovarian tumor according to the World Health Organization indicating that the tumor is well differentiated.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "G1") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "G1 (WHO)") -ClassAssertion( ) - -# Individual: (G2 (WHO)) - -AnnotationAssertion( "G2 (WHO)") -AnnotationAssertion( ) -AnnotationAssertion( "A histologic grade for ovarian tumor according to the World Health Organization indicating that the tumor is moderately differentiated.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "G2") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "G2 (WHO)") -ClassAssertion( ) - -# Individual: (G3 (WHO)) - -AnnotationAssertion( "G3 (WHO)") -AnnotationAssertion( ) -AnnotationAssertion( "A histologic grade for ovarian tumor according to the World Health Organization indicating that the tumor is poorly differentiated.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "G3") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "G3 (WHO)") -ClassAssertion( ) - -# Individual: (G4 (WHO)) - -AnnotationAssertion( "G4 (WHO)") -AnnotationAssertion( ) -AnnotationAssertion( "A histologic grade for ovarian tumor according to the World Health Organization indicating that the tumor is undifferentiated.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "G4") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "G4 (WHO)") -ClassAssertion( ) - -# Individual: (pT0 (colon)) - -AnnotationAssertion( "pT0 (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for colon and rectum according to AJCC 7th edition indicating that there is no evidence of primary tumor.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT0 (colon)") -ClassAssertion( ) - -# Individual: (pTis (colon)) - -AnnotationAssertion( "pTis (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for colon and rectum according to AJCC 7th edition indicating carcinoma in situ (intraepithelial or invasion of lamina propria).") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pTis (colon)") -ClassAssertion( ) - -# Individual: (pT1 (colon)) - -AnnotationAssertion( "pT1 (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for colon and rectum according to AJCC 7th edition indicating that the tumor invades submucosa.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT1 (colon)") -ClassAssertion( ) - -# Individual: (pT2 (colon)) - -AnnotationAssertion( "pT2 (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for colon and rectum according to AJCC 7th edition indicating that the tumor invades muscularis propria.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT2 (colon)") -ClassAssertion( ) - -# Individual: (pT3 (colon)) - -AnnotationAssertion( "pT3 (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for colon and rectum according to AJCC 7th edition indicating that the tumor invades subserosa or into non-peritionealized pericolic or perirectal tissues.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT3 (colon)") -ClassAssertion( ) - -# Individual: (pT4a (colon)) - -AnnotationAssertion( "pT4a (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for colon and rectum according to AJCC 7th edition indicating that the tumor perforates visceral peritoneum.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT4a (colon)") -ClassAssertion( ) - -# Individual: (pT4b (colon)) - -AnnotationAssertion( "pT4b (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for colon and rectum according to AJCC 7th edition indicating that the tumor directly invades other organs or structures.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT4b (colon)") -ClassAssertion( ) - -# Individual: (pT0 (lung)) - -AnnotationAssertion( "pT0 (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for lung according to AJCC 7th edition indicating that there is no evidence of primary tumor.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT0 (lung)") -ClassAssertion( ) - -# Individual: (pTis (lung)) - -AnnotationAssertion( "pTis (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for lung according to AJCC 7th edition indicating carcinoma in situ.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pTis (lung)") -ClassAssertion( ) - -# Individual: (pT1 (lung)) - -AnnotationAssertion( "pT1 (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for lung according to AJCC 7th edition indicating that the tumor is 3 cm or less in greatest dimension, surrounded by lung or visceral pleura without bronchoscopic evidence of invasion more proximal than the lobar bronchus (i.e., not in the main bronchus).") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT1 (lung)") -ClassAssertion( ) - -# Individual: (pT1a (lung)) - -AnnotationAssertion( "pT1a (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for lung according to AJCC 7th edition indicating that the tumor is 2 cm or less in greatest dimension.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT1a (lung)") -ClassAssertion( ) - -# Individual: (pT1b (lung)) - -AnnotationAssertion( "pT1b (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for lung according to AJCC 7th edition indicating that the tumor is more than 2 cm but not more than 3 cm in greatest dimension.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT1b (lung)") -ClassAssertion( ) - -# Individual: (pT2 (lung)) - -AnnotationAssertion( "pT2 (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for lung according to AJCC 7th edition indicating that the tumor is more than 3 cm but not more than 7 cm or the tumor has any of the following features: involves main bronchus, 2 cm or more distal to the carina, invades visceral pleura, associated with atelectasis or obstructive pneumonitis that extends to the hilar region but does not involve the entire lung.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT2 (lung)") -ClassAssertion( ) - -# Individual: (pT2a (lung)) - -AnnotationAssertion( "pT2a (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for lung according to AJCC 7th edition indicating that the tumor is more than 3 cm but not more than 5 cm in greatest dimension.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT2a (lung)") -ClassAssertion( ) - -# Individual: (pT2b (lung)) - -AnnotationAssertion( "pT2b (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for lung according to AJCC 7th edition indicating that the tumor is more than 5 cm but not more than 7 cm in greatest dimension.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT2b (lung)") -ClassAssertion( ) - -# Individual: (pT3 (lung)) - -AnnotationAssertion( "pT3 (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for lung according to AJCC 7th edition indicating that the tumor is more than 7 cm or one that directly invades any of: parietal pleura, chest wall (including superior sulcus tumors), diaphragm, phrenic nerve, mediastinal pleura, parietal pericardiu or the tumor is in the main bronchus less than 2 cm distal to the carina but without involvement of the carina or there is associated atelectasis or obstructive pneumonitis of the entire lung or there is separate tumor nodule(s) in the same lobe as the primary.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT3 (lung)") -ClassAssertion( ) - -# Individual: (pT4 (lung)) - -AnnotationAssertion( "pT4 (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for lung according to AJCC 7th edition indicating that the tumor of any size that invades any of the following: mediastinum, heart, great vessels, trachea, recurrent laryngeal nerve, esophagus, vertebral body, carina or there is separate tumor nodule(s) in a different ipsilateral lobe to that of the primary.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT4 (lung)") -ClassAssertion( ) - -# Individual: (pT0 (kidney)) - -AnnotationAssertion( "pT0 (kidney)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that there is no evidence of primary tumor.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT0 (kidney)") -ClassAssertion( ) - -# Individual: (pT1 (kidney)) - -AnnotationAssertion( "pT1 (kidney)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor is 7 cm or less in greatest dimension and limited to the kidney.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT1 (kidney)") -ClassAssertion( ) - -# Individual: (pT1a (kidney)) - -AnnotationAssertion( "pT1a (kidney)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor is 4 cm or less.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT1a (kidney)") -ClassAssertion( ) - -# Individual: (pT1b (kidney)) - -AnnotationAssertion( "pT1b (kidney)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor is more than 4 cm but not more than 7 cm.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT1b (kidney)") -ClassAssertion( ) - -# Individual: (pT2 (kidney)) - -AnnotationAssertion( "pT2 (kidney)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor is more than 7 cm in greatest dimension and limited to the kidney.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT2 (kidney)") -ClassAssertion( ) - -# Individual: (pT2a (kidney)) - -AnnotationAssertion( "pT2a (kidney)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor is more than 7 cm but not more than 10 cm.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT2a (kidney)") -ClassAssertion( ) - -# Individual: (pT2b (kidney)) - -AnnotationAssertion( "pT2b (kidney)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor is more than 10 cm and limited to the kidney.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT2b (kidney)") -ClassAssertion( ) - -# Individual: (pT3 (kidney)) - -AnnotationAssertion( "pT3 (kidney)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor extends into major veins or perinephric tissues but not into the ipsilateral adrenal gland and not beyond the Gerota fascia.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT3 (kidney)") -ClassAssertion( ) - -# Individual: (pT3a (kidney)) - -AnnotationAssertion( "pT3a (kidney)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor grossly extends into the renal vein or its segmental (muscle containing) branches, or the tumor invades perirenal and/or renal sinus fat (peripelvic) fat but not beyond Gerota fascia.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT3a (kidney)") -ClassAssertion( ) - -# Individual: (pT3b (kidney)) - -AnnotationAssertion( "pT3b (kidney)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor grossly extends into vena cava below diaphragm.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT3b (kidney)") -ClassAssertion( ) - -# Individual: (pT3c (kidney)) - -AnnotationAssertion( "pT3c (kidney)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor grossly extends into vena cava above the diaphragm or Invades the wall of the vena cava.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT3c (kidney)") -ClassAssertion( ) - -# Individual: (pT4 (kidney)) - -AnnotationAssertion( "pT4 (kidney)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor invades beyond Gerota fascia (including contiguous extension into the ipsilateral adrenal gland).") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT4 (kidney)") -ClassAssertion( ) - -# Individual: (pT0 (ovary)) - -AnnotationAssertion( "pT0 (ovary)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that there is no evidence of primary tumor.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT0 (ovary)") -ClassAssertion( ) - -# Individual: (pT1 (ovary)) - -AnnotationAssertion( "pT1 (ovary)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor is limited to the ovaries (one or both).") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT1 (ovary)") -ClassAssertion( ) - -# Individual: (pT1a (ovary)) - -AnnotationAssertion( "pT1a (ovary)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor is limited to one ovary; capsule intact, no tumor on ovarian surface and no malignant cells in ascites or peritoneal washings.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT1a (ovary)") -ClassAssertion( ) - -# Individual: (pT1b (ovary)) - -AnnotationAssertion( "pT1b (ovary)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor is limited to both ovaries; capsule intact, no tumor on ovarian surface and no malignant cells in ascites or peritoneal washings.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT1b (ovary)") -ClassAssertion( ) - -# Individual: (pT1c (ovary)) - -AnnotationAssertion( "pT1c (ovary)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor is limited to one or both ovaries with capsule ruptured, tumor on ovarian surface, or malignant cells in ascites or peritoneal washings.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT1c (ovary)") -ClassAssertion( ) - -# Individual: (pT2 (ovary)) - -AnnotationAssertion( "pT2 (ovary)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor involves one or both ovaries with pelvic extension.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT2 (ovary)") -ClassAssertion( ) - -# Individual: (pT2a (ovary)) - -AnnotationAssertion( "pT2a (ovary)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor has extension and/or implants on uterus and/or tube(s) and no malignant cells in ascites or peritoneal washings.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT2a (ovary)") -ClassAssertion( ) - -# Individual: (pT2b (ovary)) - -AnnotationAssertion( "pT2b (ovary)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor has extension to other pelvic tissues and no malignant cells in ascites or peritoneal washings.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT2b (ovary)") -ClassAssertion( ) - -# Individual: (pT2c (ovary)) - -AnnotationAssertion( "pT2c (ovary)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor has pelvic extension with malignant cells in ascites or peritoneal washings.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT2c (ovary)") -ClassAssertion( ) - -# Individual: (pT3 (ovary)) - -AnnotationAssertion( "pT3 (ovary)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor involves one or both ovaries with microscopically confirmed peritoneal metastasis outside the pelvis and/or regional lymph node metastasis.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT3 (ovary)") -ClassAssertion( ) - -# Individual: (pT3a (ovary)) - -AnnotationAssertion( "pT3a (ovary)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor has microscopic peritoneal metastasis beyond pelvis.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT3a (ovary)") -ClassAssertion( ) - -# Individual: (pT3b (ovary)) - -AnnotationAssertion( "pT3b (ovary)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor has macroscopic peritoneal, metastatasis beyond pelvis, 2 cm or less in greatest dimension.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT3b (ovary)") -ClassAssertion( ) - -# Individual: (pT3c (ovary)) - -AnnotationAssertion( "pT3c (ovary)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor has peritoneal metastasis beyond pelvis, more than 2 cm in greatest dimension and/or regional lymph node metastasis.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pT3c (ovary)") -ClassAssertion( ) - -# Individual: (pN0 (colon)) - -AnnotationAssertion( "pN0 (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic lymph node stage for colon and rectum according to AJCC 7th edition indicating no regional lymph node metastsis.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_n/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pN0 (colon)") -ClassAssertion( ) - -# Individual: (pN1 (colon)) - -AnnotationAssertion( "pN1 (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic lymph node stage for colon and rectum according to AJCC 7th edition indicating metastasis in 1-3 regional lymph nodes.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_n/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pN1 (colon)") -ClassAssertion( ) - -# Individual: (pN1a (colon)) - -AnnotationAssertion( "pN1a (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic lymph node stage for colon and rectum according to AJCC 7th edition indicating metastasis in 1 regional lymph node.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_n/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pN1a (colon)") -ClassAssertion( ) - -# Individual: (pN1b (colon)) - -AnnotationAssertion( "pN1b (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic lymph node stage for colon and rectum according to AJCC 7th edition indicating metastasis in 2-3 regional lymph nodes.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_n/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pN1b (colon)") -ClassAssertion( ) - -# Individual: (pN1c (colon)) - -AnnotationAssertion( "pN1c (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic lymph node stage for colon and rectum according to AJCC 7th edition indicating tumor deposit(s), i.e., satellites in the subserosa, or in non-peritonealized pericolic or perirectal soft tissue without regional lymph node metastasis.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_n/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pN1c (colon)") -ClassAssertion( ) - -# Individual: (pN2 (colon)) - -AnnotationAssertion( "pN2 (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic lymph node stage for colon and rectum according to AJCC 7th edition indicating metastasis in 4 or more regional lymph nodes.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_n/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pN2 (colon)") -ClassAssertion( ) - -# Individual: (pN2a (colon)) - -AnnotationAssertion( "pN2a (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic lymph node stage for colon and rectum according to AJCC 7th edition indicating metastasis in 4 to 6 regional lymph nodes.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_n/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pN2a (colon)") -ClassAssertion( ) - -# Individual: (pN2b (colon)) - -AnnotationAssertion( "pN2b (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic lymph node stage for colon and rectum according to AJCC 7th edition indicating metastasis in 7 or more regional lymph nodes.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_n/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pN2b (colon)") -ClassAssertion( ) - -# Individual: (pN0 (lung)) - -AnnotationAssertion( "pN0 (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic lymph node stage for lung according to AJCC 7th edition indicating no regional lymph node metastasis.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_n/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pN0 (lung)") -ClassAssertion( ) - -# Individual: (pN1 (lung)) - -AnnotationAssertion( "pN1 (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic lymph node stage for lung according to AJCC 7th edition indicating metastasis in ipsilateral peribronchial and/or ipsilateral hilar lymph nodes and intrapulmonary nodes, including involvement by direct extension.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_n/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pN1 (lung)") -ClassAssertion( ) - -# Individual: (pN2 (lung)) - -AnnotationAssertion( "pN2 (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic lymph node stage for lung according to AJCC 7th edition indicating metastasis in ipsilateral mediastinal and/or subcarinal lymph node(s).") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_n/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pN2 (lung)") -ClassAssertion( ) - -# Individual: (pN3 (lung)) - -AnnotationAssertion( "pN3 (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic lymph node stage for lung according to AJCC 7th edition indicating metastasis in contralateral mediastinal, contralateral hilar, ipsilateral or contralateral scalene, or supraclavicular lymph node(s).") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_n/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pN3 (lung)") -ClassAssertion( ) - -# Individual: (pN0 (kidney)) - -AnnotationAssertion( "pN0 (kidney)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic lymph node stage for kidney according to AJCC 7th edition indicating that there is no regional lymph node metastasis.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_n/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pN0 (kidney)") -ClassAssertion( ) - -# Individual: (pN1 (kidney)) - -AnnotationAssertion( "pN1 (kidney)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic lymph node stage for kidney according to AJCC 7th edition indicating that there is regional lymph node metastasis.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_n/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pN1 (kidney)") -ClassAssertion( ) - -# Individual: (pN0 (ovary)) - -AnnotationAssertion( "pN0 (ovary)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic lymph node stage for ovary according to AJCC 7th edition indicating that there is no regional lymph node metastasis.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_n/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pN0 (ovary)") -ClassAssertion( ) - -# Individual: (pN1 (ovary)) - -AnnotationAssertion( "pN1 (ovary)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic lymph node stage for ovary according to AJCC 7th edition indicating that there is regional lymph node metastasis.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_n/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pN1 (ovary)") -ClassAssertion( ) - -# Individual: (cM0 (colon)) - -AnnotationAssertion( "cM0 (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic distant metastases stage for colon according to AJCC 7th edition indicating that there are no symptoms or signs of distant metastasis.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cancer_staging#Pathological_M_Categorization_.28cM_and_pM.29") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "cM0 (colon)") -ClassAssertion( ) - -# Individual: (cM1 (colon)) - -AnnotationAssertion( "cM1 (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic distant metastases stage for colon according to AJCC 7th edition indicating that there is clinical evidence of distant metastases by history, physical examination, imaging studies, or invasive procedures, but without microscopic evidence of the presumed distant metastases.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cancer_staging#Pathological_M_Categorization_.28cM_and_pM.29") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "cM1 (colon)") -ClassAssertion( ) - -# Individual: (cM1a (colon)) - -AnnotationAssertion( "cM1a (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic distant metastases stage for colon according to AJCC 7th edition indicating that metastasis is confined to one organ based on clinical assessment.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_m/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "cM1a (colon)") -ClassAssertion( ) - -# Individual: (cM1b (colon)) - -AnnotationAssertion( "cM1b (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic distant metastases stage for colon according to AJCC 7th edition indicating that metastasis is in more than one organ or the peritoneum based on clinical assessment.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_m/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "cM1b (colon)") -ClassAssertion( ) - -# Individual: (pM1 (colon)) - -AnnotationAssertion( "pM1 (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic distant metastases stage for colon according to AJCC 7th edition indicating that there is microscopic evidence confirming distant metastatic disease.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_m/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pM1 (colon)") -ClassAssertion( ) - -# Individual: (pM1a (colon)) - -AnnotationAssertion( "pM1a (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic distant metastases stage for colon according to AJCC 7th edition indicating that metastasis is confined to one organ and histologically confirmed.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_m/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pM1a (colon)") -ClassAssertion( ) - -# Individual: (pM1b (colon)) - -AnnotationAssertion( "pM1b (colon)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic distant metastases stage for colon according to AJCC 7th edition indicating that metastasis is in more than one organ or the peritoneum and histologically confirmed.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_m/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pM1b (colon)") -ClassAssertion( ) - -# Individual: (cM0 (lung)) - -AnnotationAssertion( "cM0 (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic distant metastases stage for lung according to AJCC 7th edition indicating that there is no distant metastasis.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_m/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "cM0 (lung)") -ClassAssertion( ) - -# Individual: (cM1 (lung)) - -AnnotationAssertion( "cM1 (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic distant metastases stage for lung according to AJCC 7th edition indicating that there are distant metastases based on clinical assessment.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_m/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "cM1 (lung)") -ClassAssertion( ) - -# Individual: (cM1a (lung)) - -AnnotationAssertion( "cM1a (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic distant metastases stage for lung according to AJCC 7th edition indicating that metastasis is based on clinical assessment and a separate tumor nodule(s) in a contralateral lobe; tumor with pleural nodules OR malignant pleural or pericardial effusion.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_m/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "cM1a (lung)") -ClassAssertion( ) - -# Individual: (cM1b (lung)) - -AnnotationAssertion( "cM1b (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic distant metastases stage for lung according to AJCC 7th edition indicating that there is a distant metastases based on clinical assessment.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_m/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "cM1b (lung)") -ClassAssertion( ) - -# Individual: (pM1 (lung)) - -AnnotationAssertion( "pM1 (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic distant metastases stage for lung according to AJCC 7th edition indicating that there is a distant metastases that is histologically confirmed.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_m/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pM1 (lung)") -ClassAssertion( ) - -# Individual: (pM1a (lung)) - -AnnotationAssertion( "pM1a (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic distant metastases stage for lung according to AJCC 7th edition indicating that metastasis is histologically confirmed and a separate tumor nodule(s) in a contralateral lobe; tumor with pleural nodules OR malignant pleural or pericardial effusion.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_m/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pM1a (lung)") -ClassAssertion( ) - -# Individual: (pM1b (lung)) - -AnnotationAssertion( "pM1b (lung)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic distant metastases stage for lung according to AJCC 7th edition indicating that there is a distant metastases that is histologically confirmed and associated with distant lymph nodes or carcinomatosis.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_m/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pM1b (lung)") -ClassAssertion( ) - -# Individual: (cM0 (kidney)) - -AnnotationAssertion( "cM0 (kidney)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic distant metastases stage for kidney according to AJCC 7th edition indicating that there is no distant metastasis.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_m/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "cM0 (kidney)") -ClassAssertion( ) - -# Individual: (cM1 (kidney)) - -AnnotationAssertion( "cM1 (kidney)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic distant metastases stage for kidney according to AJCC 7th edition indicating that there are distant metastases based on clinical assessment.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_m/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "cM1 (kidney)") -ClassAssertion( ) - -# Individual: (pM1 (kidney)) - -AnnotationAssertion( "pM1 (kidney)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic distant metastases stage for kidney according to AJCC 7th edition indicating that there is a distant metastases that is histologically confirmed.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_m/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pM1 (kidney)") -ClassAssertion( ) - -# Individual: (cM0 (ovary)) - -AnnotationAssertion( "cM0 (ovary)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic distant metastases stage for ovary according to AJCC 7th edition indicating that there is no distant metastasis.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_m/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "cM0 (ovary)") -ClassAssertion( ) - -# Individual: (cM1 (ovary)) - -AnnotationAssertion( "cM1 (ovary)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic distant metastases stage for ovary according to AJCC 7th edition indicating that there is distant metastasis except peritoneal metastasis based on clinical assessment.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_m/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "cM1 (ovary)") -ClassAssertion( ) - -# Individual: (pM1 (ovary)) - -AnnotationAssertion( "pM1 (ovary)") -AnnotationAssertion( ) -AnnotationAssertion( "A pathologic distant metastases stage for ovary according to AJCC 7th edition indicating that there is distant metastasis except peritoneal metastasis that is histologically confirmed.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_m/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "pM1 (ovary)") -ClassAssertion( ) - -# Individual: (Occult Carcinoma (AJCC 7th)) - -AnnotationAssertion( "Occult Carcinoma (AJCC 7th)") -AnnotationAssertion( ) -AnnotationAssertion( "A clinical tumor stage group according to AJCC 7th edition indicating a small carcinoma, either asymptomatic or giving rise to metastases without symptoms due to the primary carcinoma.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Occult Carcinoma") -AnnotationAssertion( "http://www.medilexicon.com/dictionary/14371") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Occult Carcinoma (AJCC 7th)") -ClassAssertion( ) - -# Individual: (Stage 0 (AJCC 7th)) - -AnnotationAssertion( "Stage 0 (AJCC 7th)") -AnnotationAssertion( ) -AnnotationAssertion( "A clinical tumor stage group according to AJCC 7th edition indicating a carcinoma in situ (or melanoma in situ for melanoma of the skin or germ cell neoplasia in situ for testicular germ cell tumors) and generally is considered to have no metastatic potential.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage 0") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage 0 (AJCC 7th)") -ClassAssertion( ) - -# Individual: (Stage I (AJCC 7th)) - -AnnotationAssertion( "Stage I (AJCC 7th)") -AnnotationAssertion( ) -AnnotationAssertion( "A clinical tumor stage group according to AJCC 7th edition indicating cancers that are smaller or less deeply invasive without regional disease or nodes.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage I") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage I (AJCC 7th)") -ClassAssertion( ) - -# Individual: (Stage IIA (AJCC 7th)) - -AnnotationAssertion( "Stage IIA (AJCC 7th)") -AnnotationAssertion( ) -AnnotationAssertion( "A clinical tumor stage group according to AJCC 7th edition indicating cancers with increasing tumor or nodal extent but less than in Stage III and with differing characteristics from IIB and IIC.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IIA") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IIA (AJCC 7th)") -ClassAssertion( ) - -# Individual: (Stage IIB (AJCC 7th)) - -AnnotationAssertion( "Stage IIB (AJCC 7th)") -AnnotationAssertion( ) -AnnotationAssertion( "A clinical tumor stage group according to AJCC 7th edition indicating cancers with increasing tumor or nodal extent but less than in Stage III and with differing characteristics from IIA and IIC.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IIB") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IIB (AJCC 7th)") -ClassAssertion( ) - -# Individual: (Stage IIC (AJCC 7th)) - -AnnotationAssertion( "Stage IIC (AJCC 7th)") -AnnotationAssertion( ) -AnnotationAssertion( "A clinical tumor stage group according to AJCC 7th edition indicating cancers with increasing tumor or nodal extent but less than in Stage III and with differing characteristics from IIA and IIB.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IIC") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IIC (AJCC 7th)") -ClassAssertion( ) - -# Individual: (Stage IIIA (AJCC 7th)) - -AnnotationAssertion( "Stage IIIA (AJCC 7th)") -AnnotationAssertion( ) -AnnotationAssertion( "A clinical tumor stage group according to AJCC 7th edition indicating cancers with increasing tumor or nodal extent greater than in Stage II and with differing characteristics from IIIB and IIIC.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IIIA") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IIIA (AJCC 7th)") -ClassAssertion( ) - -# Individual: (Stage IIIB (AJCC 7th)) - -AnnotationAssertion( "Stage IIIB (AJCC 7th)") -AnnotationAssertion( ) -AnnotationAssertion( "A clinical tumor stage group according to AJCC 7th edition indicating cancers with increasing tumor or nodal extent greater than in Stage II and with differing characteristics from IIIA and IIIC.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IIIB") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IIIB (AJCC 7th)") -ClassAssertion( ) - -# Individual: (Stage IIIC (AJCC 7th)) - -AnnotationAssertion( "Stage IIIC (AJCC 7th)") -AnnotationAssertion( ) -AnnotationAssertion( "A clinical tumor stage group according to AJCC 7th edition indicating cancers with increasing tumor or nodal extent greater than in Stage II and with differing characteristics from IIIA and IIIB.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IIIC") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IIIC (AJCC 7th)") -ClassAssertion( ) - -# Individual: (Stage IVA (AJCC 7th)) - -AnnotationAssertion( "Stage IVA (AJCC 7th)") -AnnotationAssertion( ) -AnnotationAssertion( "A clinical tumor stage group according to AJCC 7th edition indicating cancers in patients who present with distant metastases at diagnosis and with differing characteristics from IVB.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IVA") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IVA (AJCC 7th)") -ClassAssertion( ) - -# Individual: (Stage IVB (AJCC 7th)) - -AnnotationAssertion( "Stage IVB (AJCC 7th)") -AnnotationAssertion( ) -AnnotationAssertion( "A clinical tumor stage group according to AJCC 7th edition indicating cancers in patients who present with distant metastases at diagnosis and with differing characteristics from IVA.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IVB") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IVB (AJCC 7th)") -ClassAssertion( ) - -# Individual: (Stage IA (FIGO)) - -AnnotationAssertion( "Stage IA (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating invasive carcinoma which can be diagnosed only by microscopy, with deepest invasion <5 mm and the largest extension <7 mm.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IA") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cervical_cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IA (FIGO)") -ClassAssertion( ) - -# Individual: (Stage IA1 (FIGO)) - -AnnotationAssertion( "Stage IA1 (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating measured stromal invasion of <3.0 mm in depth and extension of <7.0 mm.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IA1") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cervical_cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IA1 (FIGO)") -ClassAssertion( ) - -# Individual: (Stage IA2 (FIGO)) - -AnnotationAssertion( "Stage IA2 (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating measured stromal invasion of >3.0 mm and not >5.0 mm with an extension of not >7.0 mm.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IA2") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cervical_cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IA2 (FIGO)") -ClassAssertion( ) - -# Individual: (Stage IB (FIGO)) - -AnnotationAssertion( "Stage IB (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating clinically visible lesions limited to the cervix uteri or pre-clinical cancers greater than stage IA") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IB") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cervical_cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IB (FIGO)") -ClassAssertion( ) - -# Individual: (Stage IB1 (FIGO)) - -AnnotationAssertion( "Stage IB1 (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating clinically visible lesion limited to the cervix uteri or pre-clinical cancers greater than stage IA <4.0 cm in greatest dimension.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IB1") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cervical_cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IB1 (FIGO)") -ClassAssertion( ) - -# Individual: (Stage IB2 (FIGO)) - -AnnotationAssertion( "Stage IB2 (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating clinically visible lesion limited to the cervix uteri or pre-clinical cancers greater than stage IA >4.0 cm in greatest dimension.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IB2") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cervical_cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IB2 (FIGO)") -ClassAssertion( ) - -# Individual: (Stage IIA (FIGO)) - -AnnotationAssertion( "Stage IIA (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating cervical carcinoma invades beyond the uterus, but not to the pelvic wall or to the lower third of the vagina without parametrial invasion.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IIA") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cervical_cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IIA (FIGO)") -ClassAssertion( ) - -# Individual: (Stage IIA1 (FIGO)) - -AnnotationAssertion( "Stage IIA1 (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating cervical carcinoma invades beyond the uterus, but not to the pelvic wall or to the lower third of the vagina without parametrial invasion and clinically visible lesion <4.0 cm in greatest dimension.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IIA1") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cervical_cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IIA1 (FIGO)") -ClassAssertion( ) - -# Individual: (Stage IIA2 (FIGO)) - -AnnotationAssertion( "Stage IIA2 (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating cervical carcinoma invades beyond the uterus, but not to the pelvic wall or to the lower third of the vagina without parametrial invasion and clinically visible lesion >4.0 cm in greatest dimension.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IIA2") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cervical_cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IIA2 (FIGO)") -ClassAssertion( ) - -# Individual: (Stage IIB (FIGO)) - -AnnotationAssertion( "Stage IIB (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating cervical carcinoma invades beyond the uterus, but not to the pelvic wall or to the lower third of the vagina with obvious parametrial invasion.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IIB") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cervical_cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IIB (FIGO)") -ClassAssertion( ) - -# Individual: (Stage IIIA (FIGO)) - -AnnotationAssertion( "Stage IIIA (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating tumour involves lower third of the vagina, with no extension to the pelvic wall.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IIIA") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cervical_cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IIIA (FIGO)") -ClassAssertion( ) - -# Individual: (Stage IIIB (FIGO)) - -AnnotationAssertion( "Stage IIIB (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating extension to the pelvic wall and/or hydronephrosis or non-functioning kidney.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IIIB") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cervical_cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IIIB (FIGO)") -ClassAssertion( ) - -# Individual: (Stage IVA (FIGO)) - -AnnotationAssertion( "Stage IVA (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating spread of the growth to adjacent organs.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IVA") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cervical_cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IVA (FIGO)") -ClassAssertion( ) - -# Individual: (Stage IVB (FIGO)) - -AnnotationAssertion( "Stage IVB (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating spread to distant organs.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage IVB") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Cervical_cancer_staging") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage IVB (FIGO)") -ClassAssertion( ) - -# Individual: (Stage 1 (FIGO)) - -AnnotationAssertion( "Stage 1 (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of T1, N0, and M0.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage 1") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage 1 (FIGO)") -ClassAssertion( ) - -# Individual: (Stage 1A (FIGO)) - -AnnotationAssertion( "Stage 1A (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of T1a, N0, and M0.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage 1A") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage 1A (FIGO)") -ClassAssertion( ) - -# Individual: (Stage 1B (FIGO)) - -AnnotationAssertion( "Stage 1B (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of T1b, N0, and M0.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage 1B") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage 1B (FIGO)") -ClassAssertion( ) - -# Individual: (Stage 1C (FIGO)) - -AnnotationAssertion( "Stage 1C (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of T1c, N0, and M0.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage 1C") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage 1C (FIGO)") -ClassAssertion( ) - -# Individual: (Stage 2 (FIGO)) - -AnnotationAssertion( "Stage 2 (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of T2, N0, and M0.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage 2") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage 2 (FIGO)") -ClassAssertion( ) - -# Individual: (Stage 2A (FIGO)) - -AnnotationAssertion( "Stage 2A (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of T2a, N0, and M0.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage 2A") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage 2A (FIGO)") -ClassAssertion( ) - -# Individual: (Stage 2B (FIGO)) - -AnnotationAssertion( "Stage 2B (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of T2b, N0, and M0.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage 2B") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage 2B (FIGO)") -ClassAssertion( ) - -# Individual: (Stage 2C (FIGO)) - -AnnotationAssertion( "Stage 2C (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of T2c, N0, and M0.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage 2C") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage 2C (FIGO)") -ClassAssertion( ) - -# Individual: (Stage 3 (FIGO)) - -AnnotationAssertion( "Stage 3 (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of (T3, N0, and M0) or (T3,3a,3b, NX, and M0).") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage 3") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage 3 (FIGO)") -ClassAssertion( ) - -# Individual: (Stage 3A (FIGO)) - -AnnotationAssertion( "Stage 3A (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of T3a, N0, and M0 .") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage 3A") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage 3A (FIGO)") -ClassAssertion( ) - -# Individual: (Stage 3B (FIGO)) - -AnnotationAssertion( "Stage 3B (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of T3b, N0, and M0 .") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage 3B") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage 3B (FIGO)") -ClassAssertion( ) - -# Individual: (Stage 3C (FIGO)) - -AnnotationAssertion( "Stage 3C (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of (T3c, N0,X and M0) or (any T, N1 and M0).") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage 3C") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage 3C (FIGO)") -ClassAssertion( ) - -# Individual: (Stage 4 (FIGO)) - -AnnotationAssertion( "Stage 4 (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of any T, any N, and M1.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage 4") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage 4 (FIGO)") -ClassAssertion( ) - -# Individual: (Stage Unknown (FIGO)) - -AnnotationAssertion( "Stage Unknown (FIGO)") -AnnotationAssertion( ) -AnnotationAssertion( "A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of (T0, N0, and M0) or (T1,1a-1c,2,2a-2c, NX, and M0) or (TX, N0,X, M0).") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "Stage Unknown") -AnnotationAssertion( "https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "Stage Unknown (FIGO)") -ClassAssertion( ) - -# Individual: (3: symptomatic in bed more than 50% of the day but not bed ridden) - -AnnotationAssertion( "3: symptomatic in bed more than 50% of the day but not bed ridden") -AnnotationAssertion( ) -AnnotationAssertion( "An Eastern Cooperative Oncology Group score value specification indicating a patient is symptomatic and in bed for more than 50% of the day but is not bed ridden.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "3: symptomatic in bed more than 50% of the day but not bed ridden") -ClassAssertion( ) - -# Individual: (2: symptomatic but in bed less than 50% of the day) - -AnnotationAssertion( "2: symptomatic but in bed less than 50% of the day") -AnnotationAssertion( ) -AnnotationAssertion( "An Eastern Cooperative Oncology Group score value specification indicating a patient is symptomatic but is in bed for less than 50% of the day.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "2: symptomatic but in bed less than 50% of the day") -ClassAssertion( ) - -# Individual: (4: bed ridden) - -AnnotationAssertion( "4: bed ridden") -AnnotationAssertion( ) -AnnotationAssertion( "An Eastern Cooperative Oncology Group score value specification indicating a patient is symptomatic and is bed ridden.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "4: bed ridden") -ClassAssertion( ) - -# Individual: (0: asymptomatic) - -AnnotationAssertion( "0: asymptomatic") -AnnotationAssertion( ) -AnnotationAssertion( "An Eastern Cooperative Oncology Group score value specification indicating a patient is asymptomatic.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "0: asymptomatic") -ClassAssertion( ) - -# Individual: (1: symptomatic but fully ambulatory) - -AnnotationAssertion( "1: symptomatic but fully ambulatory") -AnnotationAssertion( ) -AnnotationAssertion( "An Eastern Cooperative Oncology Group score value specification indicating a patient is symptomatic but is fully ambulatory.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "1: symptomatic but fully ambulatory") -ClassAssertion( ) - -# Individual: (100: asymptomatic) - -AnnotationAssertion( "100: asymptomatic") -AnnotationAssertion( ) -AnnotationAssertion( "A Karnofsky score vaue specification indicating that a patient is asymptomatic.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "100: asymptomatic") -ClassAssertion( ) - -# Individual: (80-90: symptomatic but fully ambulatory) - -AnnotationAssertion( "80-90: symptomatic but fully ambulatory") -AnnotationAssertion( ) -AnnotationAssertion( "A Karnofsky score vaue specification indicating that a patient is symptomatic but fully ambulatory.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "80-90: symptomatic but fully ambulatory") -ClassAssertion( ) - -# Individual: (60-70: symptomatic but in bed less than 50% of the day) - -AnnotationAssertion( "60-70: symptomatic but in bed less than 50% of the day") -AnnotationAssertion( ) -AnnotationAssertion( "A Karnofsky score vaue specification indicating that a patient is symptomatic but in bed less than 50% of the day.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "60-70: symptomatic but in bed less than 50% of the day") -ClassAssertion( ) - -# Individual: (40-50: symptomatic, in bed more than 50% of the day, but not bed ridden) - -AnnotationAssertion( "40-50: symptomatic, in bed more than 50% of the day, but not bed ridden") -AnnotationAssertion( ) -AnnotationAssertion( "A Karnofsky score vaue specification indicating that a patient is symptomatic, in bed more than 50% of the day, but not bed ridden.") -AnnotationAssertion( "Chris Stoeckert, Helena Ellis") -AnnotationAssertion( "NCI BBRB, OBI") -AnnotationAssertion( "NCI BBRB") -AnnotationAssertion(rdfs:label "40-50: symptomatic, in bed more than 50% of the day, but not bed ridden") -ClassAssertion( ) - -# Individual: (Oxford Nanopore Technologies) - -AnnotationAssertion( "Oxford Nanopore Technologies") -AnnotationAssertion( ) -AnnotationAssertion( "An organization that is developing and selling nanopore sequencing products and is based in the UK.") -AnnotationAssertion( "James A. Overton") -AnnotationAssertion( "https://en.wikipedia.org/wiki/Oxford_Nanopore_Technologies") -AnnotationAssertion(rdfs:label "Oxford Nanopore Technologies") -ClassAssertion( ) - -# Individual: (BioGents) - -AnnotationAssertion( "BioGents") -AnnotationAssertion( ) -AnnotationAssertion( "An organization that manufactures mosquito traps and other mosquito control products.") -AnnotationAssertion( "John Judkins") -AnnotationAssertion( "WEB:https://eu.biogents.com/about-biogents/") -AnnotationAssertion(rdfs:label "BioGents") -ClassAssertion( ) - -# Individual: (Abbott) - -AnnotationAssertion( "Abbott") -AnnotationAssertion( ) -AnnotationAssertion( "A manufacturer of rapid point-of-care assay devices.") -AnnotationAssertion( "John Judkins ORCID:0000-0001-6595-0902") -AnnotationAssertion( "WEB:https://www.globalpointofcare.abbott/en/about.html") -AnnotationAssertion( "https://github.com/obi-ontology/obi/issues/1456") -AnnotationAssertion(rdfs:label "Abbott") -ClassAssertion( ) - -# Individual: (J. Mitra) - -AnnotationAssertion( "J. Mitra") -AnnotationAssertion( ) -AnnotationAssertion( "A manufacturer of in vitro diagnostic assay kits in India.") -AnnotationAssertion( "John Judkins ORCID:0000-0001-6595-0902") -AnnotationAssertion( "WEB:https://jmitra.co.in/about-us/") -AnnotationAssertion( "https://github.com/obi-ontology/obi/issues/1456") -AnnotationAssertion(rdfs:label "J. Mitra") -ClassAssertion( ) - -# Individual: (InBios) - -AnnotationAssertion( "InBios") -AnnotationAssertion( ) -AnnotationAssertion( "A manufacturer that specializes in in vitro diagnostic devices designed to test for infectious diseases.") -AnnotationAssertion( "John Judkins ORCID:0000-0001-6595-0902") -AnnotationAssertion( "WEB:https://inbios.com/about/") -AnnotationAssertion( "https://github.com/obi-ontology/obi/issues/1456") -AnnotationAssertion(rdfs:label "InBios") -ClassAssertion( ) - -# Individual: (meter) - -AnnotationAssertion( "meter") -AnnotationAssertion( "A length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second.") -AnnotationAssertion( "m") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "meter") -ClassAssertion( ) - -# Individual: (kilogram) - -AnnotationAssertion( "kilogram") -AnnotationAssertion( "A mass unit which is equal to the mass of the International Prototype Kilogram kept by the BIPM at Svres, France.") -AnnotationAssertion( "kg") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "kilogram") -ClassAssertion( ) - -# Individual: (second) - -AnnotationAssertion( "second") -AnnotationAssertion( "A time unit which is equal to the duration of 9 192 631 770 periods of the radiation corresponding to the transition between the two hyperfine levels of the ground state of the caesium 133 atom.") -AnnotationAssertion( "s") -AnnotationAssertion( "sec") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "second") -ClassAssertion( ) - -# Individual: (centimeter) - -AnnotationAssertion( "centimeter") -AnnotationAssertion( "A length unit which is equal to one hundredth of a meter or 10^[-2] m.") -AnnotationAssertion( "cm") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "centimeter") -ClassAssertion( ) - -# Individual: (millimeter) - -AnnotationAssertion( "millimeter") -AnnotationAssertion( "A length unit which is equal to one thousandth of a meter or 10^[-3] m.") -AnnotationAssertion( "mm") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "millimeter") -ClassAssertion( ) - -# Individual: (micrometer) - -AnnotationAssertion( "micrometer") -AnnotationAssertion( "A length unit which is equal to one millionth of a meter or 10^[-6] m.") -AnnotationAssertion( "um") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "micrometer") -ClassAssertion( ) - -# Individual: (nanometer) - -AnnotationAssertion( "nanometer") -AnnotationAssertion( "A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m.") -AnnotationAssertion( "nm") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "nanometer") -ClassAssertion( ) - -# Individual: (angstrom) - -AnnotationAssertion( "angstrom") -AnnotationAssertion( "A length unit which is equal to 10 [-10] m.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "angstrom") -ClassAssertion( ) - -# Individual: (gram) - -AnnotationAssertion( "gram") -AnnotationAssertion( "A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg.") -AnnotationAssertion( "g") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "gram") -ClassAssertion( ) - -# Individual: (milligram) - -AnnotationAssertion( "milligram") -AnnotationAssertion( "A mass unit which is equal to one thousandth of a gram or 10^[-3] g.") -AnnotationAssertion( "mg") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "milligram") -ClassAssertion( ) - -# Individual: (microgram) - -AnnotationAssertion( "microgram") -AnnotationAssertion( "A mass unit which is equal to one millionth of a gram or 10^[-6] g.") -AnnotationAssertion( "ug") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "microgram") -ClassAssertion( ) - -# Individual: (nanogram) - -AnnotationAssertion( "nanogram") -AnnotationAssertion( "A mass unit which is equal to one thousandth of one millionth of a gram or 10^[-9] g.") -AnnotationAssertion( "ng") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "nanogram") -ClassAssertion( ) - -# Individual: (picogram) - -AnnotationAssertion( "picogram") -AnnotationAssertion( "A mass unit which is equal to 10^[-12] g.") -AnnotationAssertion( "pg") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "picogram") -ClassAssertion( ) - -# Individual: (degree Celsius) - -AnnotationAssertion( "degree Celsius") -AnnotationAssertion( "A temperature unit which is equal to one kelvin degree. However, they have their zeros at different points. The centigrade scale has its zero at 273.15 K.") -AnnotationAssertion( "C") -AnnotationAssertion( "degree C") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "degree Celsius") -ClassAssertion( ) - -# Individual: (minute) - -AnnotationAssertion( "minute") -AnnotationAssertion( "A time unit which is equal to 60 seconds.") -AnnotationAssertion( "min") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "minute") -ClassAssertion( ) - -# Individual: (hour) - -AnnotationAssertion( "hour") -AnnotationAssertion( "A time unit which is equal to 3600 seconds or 60 minutes.") -AnnotationAssertion( "h") -AnnotationAssertion( "hr") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "hour") -ClassAssertion( ) - -# Individual: (day) - -AnnotationAssertion( "day") -AnnotationAssertion( "A time unit which is equal to 24 hours.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "day") -ClassAssertion( ) - -# Individual: (week) - -AnnotationAssertion( "week") -AnnotationAssertion( "A time unit which is equal to 7 days.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "week") -ClassAssertion( ) - -# Individual: (month) - -AnnotationAssertion( "month") -AnnotationAssertion( "A time unit which is approximately equal to the length of time of one of cycle of the moon's phases which in science is taken to be equal to 30 days.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "month") -ClassAssertion( ) - -# Individual: (year) - -AnnotationAssertion( "year") -AnnotationAssertion( "A time unit which is equal to 12 months which is science is taken to be equal to 365.25 days.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "year") -ClassAssertion( ) - -# Individual: (micromole) - -AnnotationAssertion( "micromole") -AnnotationAssertion( "A substance unit equal to a millionth of a mol or 10^[-6] mol.") -AnnotationAssertion( "umol") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "micromole") -ClassAssertion( ) - -# Individual: (nanomole) - -AnnotationAssertion( "nanomole") -AnnotationAssertion( "A substance unit equal to one thousandth of one millionth of a mole or 10^[-9] mol.") -AnnotationAssertion( "nmol") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "nanomole") -ClassAssertion( ) - -# Individual: (picomole) - -AnnotationAssertion( "picomole") -AnnotationAssertion( "A substance unit equal to 10^[-12] mol.") -AnnotationAssertion( "pmol") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "picomole") -ClassAssertion( ) - -# Individual: (molar) - -AnnotationAssertion( "molar") -AnnotationAssertion( "A unit of concentration which expresses a concentration of 1 mole of solute per liter of solution (mol/L).") -AnnotationAssertion( "M") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "molar") -ClassAssertion( ) - -# Individual: (millimolar) - -AnnotationAssertion( "millimolar") -AnnotationAssertion( "A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M.") -AnnotationAssertion( "mM") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "millimolar") -ClassAssertion( ) - -# Individual: (micromolar) - -AnnotationAssertion( "micromolar") -AnnotationAssertion( "A unit of molarity which is equal to one millionth of a molar or 10^[-6] M.") -AnnotationAssertion( "uM") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "micromolar") -ClassAssertion( ) - -# Individual: (nanomolar) - -AnnotationAssertion( "nanomolar") -AnnotationAssertion( "A unit of molarity which is equal to one thousandth of one millionth of a molar or 10^[-9] M.") -AnnotationAssertion( "nM") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "nanomolar") -ClassAssertion( ) - -# Individual: (picomolar) - -AnnotationAssertion( "picomolar") -AnnotationAssertion( "A unit of molarity which is equal to 10^[-12] M.") -AnnotationAssertion( "pM") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "picomolar") -ClassAssertion( ) - -# Individual: (cubic centimeter) - -AnnotationAssertion( "cubic centimeter") -AnnotationAssertion( "A volume unit which is equal to one millionth of a cubic meter or 10^[-9] m^[3], or to 1 ml.") -AnnotationAssertion( "cc") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "cubic centimeter") -ClassAssertion( ) - -# Individual: (milliliter) - -AnnotationAssertion( "milliliter") -AnnotationAssertion( "A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter.") -AnnotationAssertion( "ml") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "milliliter") -ClassAssertion( ) - -# Individual: (liter) - -AnnotationAssertion( "liter") -AnnotationAssertion( "A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3], or to 1 decimeter.") -AnnotationAssertion( "L") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "liter") -ClassAssertion( ) - -# Individual: (cubic decimeter) - -AnnotationAssertion( "cubic decimeter") -AnnotationAssertion( "A volume unit which is equal to one thousand of a cubic meter or 10^[-3] m^[3], or to 1 L.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "cubic decimeter") -ClassAssertion( ) - -# Individual: (microliter) - -AnnotationAssertion( "microliter") -AnnotationAssertion( "A volume unit which is equal to one millionth of a liter or 10^[-6] L.") -AnnotationAssertion( "ul") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "microliter") -ClassAssertion( ) - -# Individual: (nanoliter) - -AnnotationAssertion( "nanoliter") -AnnotationAssertion( "A volume unit which is equal to one thousandth of one millionth of a liter or 10^[-9] L.") -AnnotationAssertion( "nl") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "nanoliter") -ClassAssertion( ) - -# Individual: (picoliter) - -AnnotationAssertion( "picoliter") -AnnotationAssertion( "A volume unit which is equal to 10^[-12] L.") -AnnotationAssertion( "pl") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "picoliter") -ClassAssertion( ) - -# Individual: (hertz) - -AnnotationAssertion( "hertz") -AnnotationAssertion( "A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "hertz") -ClassAssertion( ) - -# Individual: (mass percentage) - -AnnotationAssertion( "mass percentage") -AnnotationAssertion( "A dimensionless concentration unit which denotes the mass of a substance in a mixture as a percentage of the mass of the entire mixture.") -AnnotationAssertion( "% w/w") -AnnotationAssertion( "percent weight pr weight") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "mass percentage") -ClassAssertion( ) - -# Individual: (mass volume percentage) - -AnnotationAssertion( "mass volume percentage") -AnnotationAssertion( "A dimensionless concentration unit which denotes the mass of the substance in a mixture as a percentage of the volume of the entire mixture.") -AnnotationAssertion( "% w/v") -AnnotationAssertion( "percent vol per vol") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "mass volume percentage") -ClassAssertion( ) - -# Individual: (volume percentage) - -AnnotationAssertion( "volume percentage") -AnnotationAssertion( "A dimensionless concentration unit which denotes the volume of the solute in mL per 100 mL of the resulting solution.") -AnnotationAssertion( "% v/v") -AnnotationAssertion( "percent vol per vol") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "volume percentage") -ClassAssertion( ) - -# Individual: (gram per liter) - -AnnotationAssertion( "gram per liter") -AnnotationAssertion( "A mass unit density which is equal to mass of an object in grams divided by the volume in liters.") -AnnotationAssertion( "g per L") -AnnotationAssertion( "g/L") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "gram per liter") -ClassAssertion( ) - -# Individual: (milligram per milliliter) - -AnnotationAssertion( "milligram per milliliter") -AnnotationAssertion( "A mass unit density which is equal to mass of an object in milligrams divided by the volume in milliliters.") -AnnotationAssertion( "mg per ml") -AnnotationAssertion( "mg/ml") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "milligram per milliliter") -ClassAssertion( ) - -# Individual: (degree Fahrenheit) - -AnnotationAssertion( "degree Fahrenheit") -AnnotationAssertion( "A temperature unit which is equal to 5/9ths of a kelvin. Negative 40 degrees Fahrenheit is equal to negative 40 degrees Celsius.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "degree Fahrenheit") -ClassAssertion( ) - -# Individual: (pH) - -AnnotationAssertion( "pH") -AnnotationAssertion( "A dimensionless concentration notation which denotes the acidity of a solution in terms of activity of hydrogen ions (H+).") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "pH") -ClassAssertion( ) - -# Individual: (milliliter per liter) - -AnnotationAssertion( "milliliter per liter") -AnnotationAssertion( "A volume per unit volume unit which is equal to one millionth of a liter of solute in one liter of solution.") -AnnotationAssertion( "ml per L") -AnnotationAssertion( "ml/l") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "milliliter per liter") -ClassAssertion( ) - -# Individual: (gram per deciliter) - -AnnotationAssertion( "gram per deciliter") -AnnotationAssertion( "A mass density unit which is equal to mass of an object in grams divided by the volume in deciliters.") -AnnotationAssertion( "g/dl") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "gram per deciliter") -ClassAssertion( ) - -# Individual: (colony forming unit per volume) - -AnnotationAssertion( "colony forming unit per volume") -AnnotationAssertion( "A concentration unit which a measure of viable bacterial numbers in a given volume.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "colony forming unit per volume") -ClassAssertion( ) - -# Individual: (microliters per minute) - -AnnotationAssertion( "microliters per minute") -AnnotationAssertion( "A volumetric flow rate unit which is equal to one microliter volume through a given surface in one minute.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "microliters per minute") -ClassAssertion( ) - -# Individual: (count per nanomolar second) - -AnnotationAssertion( "count per nanomolar second") -AnnotationAssertion( "A rate unit which is equal to one over one nanomolar second.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "count per nanomolar second") -ClassAssertion( ) - -# Individual: (count per molar second) - -AnnotationAssertion( "count per molar second") -AnnotationAssertion( "A rate unit which is equal to one over one molar second.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "count per molar second") -ClassAssertion( ) - -# Individual: (count per nanomolar) - -AnnotationAssertion( "count per nanomolar") -AnnotationAssertion( "A rate unit which is equal to one over one nanomolar.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "count per nanomolar") -ClassAssertion( ) - -# Individual: (count per molar) - -AnnotationAssertion( "count per molar") -AnnotationAssertion( "A rate unit which is equal to one over one molar.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "count per molar") -ClassAssertion( ) - -# Individual: (microgram per liter) - -AnnotationAssertion( "microgram per liter") -AnnotationAssertion( "A mass unit density which is equal to mass of an object in micrograms divided by the volume in liters.") -AnnotationAssertion( "ng/ml") -AnnotationAssertion( "ug/L") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "microgram per liter") -ClassAssertion( ) - - -DisjointClasses( ) -DifferentIndividuals( ) -DifferentIndividuals( ) -) \ No newline at end of file diff --git a/src/ontology/imports/obi_terms.txt b/src/ontology/imports/obi_terms.txt deleted file mode 100644 index 8b13789..0000000 --- a/src/ontology/imports/obi_terms.txt +++ /dev/null @@ -1 +0,0 @@ - diff --git a/src/ontology/imports/pato_import.owl b/src/ontology/imports/pato_import.owl deleted file mode 100644 index 8704e8d..0000000 --- a/src/ontology/imports/pato_import.owl +++ /dev/null @@ -1,1971 +0,0 @@ -Prefix(:=) -Prefix(owl:=) -Prefix(rdf:=) -Prefix(xml:=) -Prefix(xsd:=) -Prefix(rdfs:=) - - -Ontology( - -Annotation( ) -Annotation(owl:versionInfo "2024-02-20") - -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(ObjectProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty(rdfs:comment)) -Declaration(AnnotationProperty(rdfs:label)) -Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) -############################ -# Annotation Properties -############################ - -# Annotation Property: (definition) - -AnnotationAssertion(rdfs:label "definition") - -# Annotation Property: () - -SubAnnotationPropertyOf( ) - -# Annotation Property: (is a defining property chain axiom) - -AnnotationAssertion( "If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL") -AnnotationAssertion(rdfs:label "is a defining property chain axiom") - -# Annotation Property: (is a defining property chain axiom where second argument is reflexive) - -AnnotationAssertion( "If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.") -AnnotationAssertion(rdfs:label "is a defining property chain axiom where second argument is reflexive") - -# Annotation Property: () - -SubAnnotationPropertyOf( ) - -# Annotation Property: () - -SubAnnotationPropertyOf( ) - -# Annotation Property: () - -SubAnnotationPropertyOf( ) - -# Annotation Property: () - -SubAnnotationPropertyOf( ) - -# Annotation Property: () - -SubAnnotationPropertyOf( ) - -# Annotation Property: () - -SubAnnotationPropertyOf( ) - -# Annotation Property: () - -SubAnnotationPropertyOf( ) - -# Annotation Property: () - -SubAnnotationPropertyOf( ) - -# Annotation Property: () - -SubAnnotationPropertyOf( ) - -# Annotation Property: () - -SubAnnotationPropertyOf( ) - -# Annotation Property: () - -SubAnnotationPropertyOf( ) - -# Annotation Property: () - -SubAnnotationPropertyOf( ) - -# Annotation Property: () - -SubAnnotationPropertyOf( ) - -# Annotation Property: () - -SubAnnotationPropertyOf( ) - -# Annotation Property: () - -SubAnnotationPropertyOf( ) - -# Annotation Property: () - -SubAnnotationPropertyOf( ) - -# Annotation Property: () - -SubAnnotationPropertyOf( ) - -# Annotation Property: () - -SubAnnotationPropertyOf( ) - -# Annotation Property: () - -SubAnnotationPropertyOf( ) - -# Annotation Property: (license) - -AnnotationAssertion( "http://purl.org/dc/terms/license") -AnnotationAssertion( "uberon") -AnnotationAssertion( "dcterms-license") -AnnotationAssertion( "true"^^xsd:boolean) -AnnotationAssertion( "dcterms-license") -AnnotationAssertion(rdfs:label "license") - -# Annotation Property: (consider) - -AnnotationAssertion(rdfs:label "consider") - -# Annotation Property: (has_broad_synonym) - -AnnotationAssertion(rdfs:label "has_broad_synonym") - -# Annotation Property: (database_cross_reference) - -AnnotationAssertion(rdfs:label "database_cross_reference") - -# Annotation Property: (has_exact_synonym) - -AnnotationAssertion(rdfs:label "has_exact_synonym") - -# Annotation Property: (has_obo_format_version) - -AnnotationAssertion(rdfs:label "has_obo_format_version") - -# Annotation Property: (has_obo_namespace) - -AnnotationAssertion(rdfs:label "has_obo_namespace") - - -############################ -# Object Properties -############################ - -# Object Property: (part_of) - -AnnotationAssertion( "is part of"@en) -AnnotationAssertion( "my brain is part of my body (continuant parthood, two material entities)"@en) -AnnotationAssertion( "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)"@en) -AnnotationAssertion( "this day is part of this year (occurrent parthood)"@en) -AnnotationAssertion( "a core relation that holds between a part and its whole"@en) -AnnotationAssertion( "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other."@en) -AnnotationAssertion( "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"@en) -AnnotationAssertion( "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) - -A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'."@en) -AnnotationAssertion( "part_of"@en) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "BFO:0000050") -AnnotationAssertion( "external") -AnnotationAssertion( "quality") -AnnotationAssertion( "uberon") -AnnotationAssertion( "part_of") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "part_of") -AnnotationAssertion(rdfs:label "part of"@en) -AnnotationAssertion(rdfs:label "part of") -AnnotationAssertion(rdfs:label "part_of") -AnnotationAssertion(rdfs:seeAlso ) -AnnotationAssertion(rdfs:seeAlso ) -AnnotationAssertion(rdfs:seeAlso "http://www.obofoundry.org/ro/#OBO_REL:part_of") -SubObjectPropertyOf( ) -InverseObjectProperties( ) -TransitiveObjectProperty() - -# Object Property: (has part) - -AnnotationAssertion( "has part"@en) -AnnotationAssertion( "my body has part my brain (continuant parthood, two material entities)"@en) -AnnotationAssertion( "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)"@en) -AnnotationAssertion( "this year has part this day (occurrent parthood)"@en) -AnnotationAssertion( "a core relation that holds between a whole and its part"@en) -AnnotationAssertion( "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part."@en) -AnnotationAssertion( "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"@en) -AnnotationAssertion( "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) - -A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'."@en) -AnnotationAssertion( "has_part"@en) -AnnotationAssertion( ) -AnnotationAssertion( "BFO:0000051") -AnnotationAssertion( "external") -AnnotationAssertion( "quality") -AnnotationAssertion( "uberon") -AnnotationAssertion( "has_part") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "has_part") -AnnotationAssertion(rdfs:label "has part"@en) -AnnotationAssertion(rdfs:label "has part") -AnnotationAssertion(rdfs:label "has_part") -SubObjectPropertyOf( ) -TransitiveObjectProperty() - -# Object Property: (preceded by) - -AnnotationAssertion( "preceded by"@en) -AnnotationAssertion( "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point."@en) -AnnotationAssertion( "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other."@en) -AnnotationAssertion( "is preceded by"@en) -AnnotationAssertion( "preceded_by"@en) -AnnotationAssertion( "http://www.obofoundry.org/ro/#OBO_REL:preceded_by") -AnnotationAssertion( "BFO:0000062") -AnnotationAssertion( "external") -AnnotationAssertion( "uberon") -AnnotationAssertion( "preceded_by") -AnnotationAssertion( ) -AnnotationAssertion( "preceded_by") -AnnotationAssertion(rdfs:label "preceded by"@en) -AnnotationAssertion(rdfs:label "preceded by") -SubObjectPropertyOf( ) -InverseObjectProperties( ) -TransitiveObjectProperty() -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (precedes) - -AnnotationAssertion( "precedes"@en) -AnnotationAssertion( "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point."@en) -AnnotationAssertion( "BFO:0000063") -AnnotationAssertion( "external") -AnnotationAssertion( "uberon") -AnnotationAssertion( "precedes") -AnnotationAssertion( ) -AnnotationAssertion( "precedes") -AnnotationAssertion(rdfs:label "precedes"@en) -AnnotationAssertion(rdfs:label "precedes") -SubObjectPropertyOf( ) -TransitiveObjectProperty() -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (characteristic of) - -AnnotationAssertion( "inheres in"@en) -AnnotationAssertion( "this fragility is a characteristic of this vase"@en) -AnnotationAssertion( "this red color is a characteristic of this apple"@en) -AnnotationAssertion( "a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence."@en) -AnnotationAssertion( "inheres_in"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this relation was previously called \"inheres in\", but was changed to be called \"characteristic of\" because BFO2 uses \"inheres in\" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.") -AnnotationAssertion(rdfs:label "characteristic of"@en) -SubObjectPropertyOf( ) -InverseObjectProperties( ) -FunctionalObjectProperty() - -# Object Property: (bearer of) - -AnnotationAssertion( "bearer of"@en) -AnnotationAssertion( "this apple is bearer of this red color"@en) -AnnotationAssertion( "this vase is bearer of this fragility"@en) -AnnotationAssertion( "Inverse of characteristic_of"@en) -AnnotationAssertion( "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist."@en) -AnnotationAssertion( "bearer_of"@en) -AnnotationAssertion( "is bearer of"@en) -AnnotationAssertion( ) -AnnotationAssertion( "RO:0000053") -AnnotationAssertion( "external") -AnnotationAssertion( "bearer_of") -AnnotationAssertion( "bearer_of") -AnnotationAssertion(rdfs:label "has characteristic"@en) -AnnotationAssertion(rdfs:label "bearer of") -InverseFunctionalObjectProperty() -ObjectPropertyRange( ) - -# Object Property: (participates in) - -AnnotationAssertion( "participates in"@en) -AnnotationAssertion( "this blood clot participates in this blood coagulation"@en) -AnnotationAssertion( "this input material (or this output material) participates in this process"@en) -AnnotationAssertion( "this investigator participates in this investigation"@en) -AnnotationAssertion( "a relation between a continuant and a process, in which the continuant is somehow involved in the process"@en) -AnnotationAssertion( "participates_in"@en) -AnnotationAssertion( "RO:0000056") -AnnotationAssertion( "external") -AnnotationAssertion( "uberon") -AnnotationAssertion( "participates_in") -AnnotationAssertion( "participates_in") -AnnotationAssertion(rdfs:label "participates in"@en) -AnnotationAssertion(rdfs:label "participates in") -InverseObjectProperties( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (has participant) - -AnnotationAssertion( "has participant"@en) -AnnotationAssertion( "this blood coagulation has participant this blood clot"@en) -AnnotationAssertion( "this investigation has participant this investigator"@en) -AnnotationAssertion( "this process has participant this input material (or this output material)"@en) -AnnotationAssertion( "a relation between a process and a continuant, in which the continuant is somehow involved in the process"@en) -AnnotationAssertion( "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time."@en) -AnnotationAssertion( "has_participant"@en) -AnnotationAssertion( "http://www.obofoundry.org/ro/#OBO_REL:has_participant") -AnnotationAssertion( "RO:0000057") -AnnotationAssertion( "external") -AnnotationAssertion( "has_participant") -AnnotationAssertion( "has_participant") -AnnotationAssertion(rdfs:label "has participant"@en) -AnnotationAssertion(rdfs:label "has participant") -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (function of) - -AnnotationAssertion( "this catalysis function is a function of this enzyme"@en) -AnnotationAssertion( "a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence"@en) -AnnotationAssertion( "A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists."@en) -AnnotationAssertion( "function_of"@en) -AnnotationAssertion( "is function of"@en) -AnnotationAssertion(rdfs:comment "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.") -AnnotationAssertion(rdfs:label "function of"@en) -SubObjectPropertyOf( ) -InverseObjectProperties( ) -ObjectPropertyDomain( ) - -# Object Property: (quality of) - -AnnotationAssertion( "this red color is a quality of this apple"@en) -AnnotationAssertion( "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence"@en) -AnnotationAssertion( "A quality inheres in its bearer at all times for which the quality exists."@en) -AnnotationAssertion( "is quality of"@en) -AnnotationAssertion( "quality_of"@en) -AnnotationAssertion(rdfs:comment "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.") -AnnotationAssertion(rdfs:label "quality of"@en) -SubObjectPropertyOf( ) -InverseObjectProperties( ) - -# Object Property: (role of) - -AnnotationAssertion( "this investigator role is a role of this person"@en) -AnnotationAssertion( "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence"@en) -AnnotationAssertion( "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists."@en) -AnnotationAssertion( "is role of"@en) -AnnotationAssertion( "role_of"@en) -AnnotationAssertion(rdfs:comment "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.") -AnnotationAssertion(rdfs:label "role of"@en) -SubObjectPropertyOf( ) -InverseObjectProperties( ) - -# Object Property: (has function) - -AnnotationAssertion( "this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)"@en) -AnnotationAssertion( "a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence"@en) -AnnotationAssertion( "A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists."@en) -AnnotationAssertion( "has_function"@en) -AnnotationAssertion(rdfs:label "has function"@en) -SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (has quality) - -AnnotationAssertion( "this apple has quality this red color"@en) -AnnotationAssertion( "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence"@en) -AnnotationAssertion( "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist."@en) -AnnotationAssertion( "has_quality"@en) -AnnotationAssertion( "RO:0000086") -AnnotationAssertion( "uberon") -AnnotationAssertion( "has_quality") -AnnotationAssertion( "has_quality") -AnnotationAssertion(rdfs:label "has quality"@en) -AnnotationAssertion(rdfs:label "has quality") -SubObjectPropertyOf( ) -ObjectPropertyRange( ) - -# Object Property: (has role) - -AnnotationAssertion( "this person has role this investigator role (more colloquially: this person has this role of investigator)"@en) -AnnotationAssertion( "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence"@en) -AnnotationAssertion( "A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists."@en) -AnnotationAssertion( "has_role"@en) -AnnotationAssertion(rdfs:label "has role"@en) -SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (has disposition) - -AnnotationAssertion( "a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence"@en) -AnnotationAssertion(rdfs:label "has disposition"@en) -SubObjectPropertyOf( ) -InverseObjectProperties( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (disposition of) - -AnnotationAssertion( "inverse of has disposition") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.") -AnnotationAssertion(rdfs:label "disposition of"@en) -SubObjectPropertyOf( ) - -# Object Property: (has regulatory component activity) - -AnnotationAssertion( "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.") -AnnotationAssertion( "dos") -AnnotationAssertion( "2017-05-24T09:30:46Z"^^xsd:dateTime) -AnnotationAssertion( "RO:0002013") -AnnotationAssertion( "external") -AnnotationAssertion( "has_regulatory_component_activity") -AnnotationAssertion( "has_regulatory_component_activity") -AnnotationAssertion(rdfs:label "has regulatory component activity") -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) - -# Object Property: (has negative regulatory component activity) - -AnnotationAssertion( "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.") -AnnotationAssertion( "dos") -AnnotationAssertion( "2017-05-24T09:31:01Z"^^xsd:dateTime) -AnnotationAssertion( "RO:0002014") -AnnotationAssertion( "external") -AnnotationAssertion( "has_negative_regulatory_component_activity") -AnnotationAssertion( "has_negative_regulatory_component_activity") -AnnotationAssertion(rdfs:comment "By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'.") -AnnotationAssertion(rdfs:label "has negative regulatory component activity") -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) - -# Object Property: (has positive regulatory component activity) - -AnnotationAssertion( "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.") -AnnotationAssertion( "dos") -AnnotationAssertion( "2017-05-24T09:31:17Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:comment "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'.") -AnnotationAssertion(rdfs:label "has positive regulatory component activity") -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) - -# Object Property: (has component activity) - -AnnotationAssertion( "dos") -AnnotationAssertion( "2017-05-24T09:44:33Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:comment "A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B.") -AnnotationAssertion(rdfs:label "has component activity") -SubObjectPropertyOf( ) - -# Object Property: (has component process) - -AnnotationAssertion( "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.") -AnnotationAssertion( "dos") -AnnotationAssertion( "2017-05-24T09:49:21Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label "has component process") -SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (directly regulated by) - -AnnotationAssertion( "dos") -AnnotationAssertion( "2017-09-17T13:52:24Z"^^xsd:dateTime) -AnnotationAssertion(Annotation( "GOC:dos") rdfs:comment "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.") -AnnotationAssertion(rdfs:label "directly regulated by") -SubObjectPropertyOf( ) -InverseObjectProperties( ) - -# Object Property: (directly negatively regulated by) - -AnnotationAssertion(Annotation( "GOC:dos") "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.") -AnnotationAssertion( "dos") -AnnotationAssertion( "2017-09-17T13:52:38Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label "directly negatively regulated by") -SubObjectPropertyOf( ) -InverseObjectProperties( ) - -# Object Property: (directly positively regulated by) - -AnnotationAssertion(Annotation( "GOC:dos") "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.") -AnnotationAssertion( "dos") -AnnotationAssertion( "2017-09-17T13:52:47Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label "directly positively regulated by") -SubObjectPropertyOf( ) -InverseObjectProperties( ) - -# Object Property: (has effector activity) - -AnnotationAssertion(Annotation( "GOC:dos") "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.") -AnnotationAssertion( "dos") -AnnotationAssertion( "2017-09-22T14:14:36Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:comment "This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations.") -AnnotationAssertion(rdfs:label "has effector activity") -SubObjectPropertyOf( ) -FunctionalObjectProperty() - -# Object Property: (ends after) - -AnnotationAssertion( "David Osumi-Sutherland") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)"@en) -AnnotationAssertion(rdfs:label "ends after"@en) -SubObjectPropertyOf( ) -TransitiveObjectProperty() - -# Object Property: (immediately preceded by) - -AnnotationAssertion( "David Osumi-Sutherland") -AnnotationAssertion( "starts_at_end_of") -AnnotationAssertion( "RO:0002087") -AnnotationAssertion( "external") -AnnotationAssertion( "uberon") -AnnotationAssertion( "immediately_preceded_by") -AnnotationAssertion( "immediately_preceded_by") -AnnotationAssertion(rdfs:comment "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)"@en) -AnnotationAssertion(rdfs:label "immediately preceded by"@en) -AnnotationAssertion(rdfs:label "immediately preceded by") -SubObjectPropertyOf( ) -InverseObjectProperties( ) - -# Object Property: (immediately precedes) - -AnnotationAssertion( ) -AnnotationAssertion( "David Osumi-Sutherland") -AnnotationAssertion( "ends_at_start_of") -AnnotationAssertion( "meets") -AnnotationAssertion( ) -AnnotationAssertion( "RO:0002090") -AnnotationAssertion( "external") -AnnotationAssertion( "immediately_precedes") -AnnotationAssertion( ) -AnnotationAssertion( "immediately_precedes") -AnnotationAssertion(rdfs:comment "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)"@en) -AnnotationAssertion(rdfs:label "immediately precedes"@en) -AnnotationAssertion(rdfs:label "immediately precedes") -SubObjectPropertyOf( ) - -# Object Property: (overlaps) - -AnnotationAssertion( ) -AnnotationAssertion( "x overlaps y if and only if there exists some z such that x has part z and z part of y") -AnnotationAssertion( "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)") -AnnotationAssertion( ) -AnnotationAssertion( "RO:0002131") -AnnotationAssertion( "external") -AnnotationAssertion( "uberon") -AnnotationAssertion( "overlaps") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "overlaps") -AnnotationAssertion(rdfs:label "overlaps"@en) -AnnotationAssertion(rdfs:label "overlaps") -SubObjectPropertyOf( ) -SymmetricObjectProperty() - -# Object Property: (has component) - -AnnotationAssertion( ) -AnnotationAssertion( "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.") -AnnotationAssertion( "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity.") -AnnotationAssertion( "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit."@en) -AnnotationAssertion( ) -AnnotationAssertion( "RO:0002180") -AnnotationAssertion( "external") -AnnotationAssertion( "uberon") -AnnotationAssertion( "has_component") -AnnotationAssertion( ) -AnnotationAssertion( "has_component") -AnnotationAssertion(rdfs:label "has component"@en) -AnnotationAssertion(rdfs:label "has component") -AnnotationAssertion(rdfs:seeAlso ) -SubObjectPropertyOf( ) - -# Object Property: (regulates) - -AnnotationAssertion( "p regulates q iff p is causally upstream of q, the execution of p is not constant and varies according to specific conditions, and p influences the rate or magnitude of execution of q due to an effect either on some enabler of q or some enabler of a part of q.") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "GO") -AnnotationAssertion( "Regulation precludes parthood; the regulatory process may not be within the regulated process.") -AnnotationAssertion( "regulates (processual)") -AnnotationAssertion( "false"^^xsd:boolean) -AnnotationAssertion( "RO:0002211") -AnnotationAssertion( "external") -AnnotationAssertion( "regulates") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "regulates") -AnnotationAssertion(rdfs:label "regulates"@en) -AnnotationAssertion(rdfs:label "regulates") -SubObjectPropertyOf( ) -InverseObjectProperties( ) -TransitiveObjectProperty() -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (negatively regulates) - -AnnotationAssertion( "p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q.") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "negatively regulates (process to process)") -AnnotationAssertion( ) -AnnotationAssertion( "RO:0002212") -AnnotationAssertion( "external") -AnnotationAssertion( "negatively_regulates") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "negatively_regulates") -AnnotationAssertion(rdfs:label "negatively regulates"@en) -AnnotationAssertion(rdfs:label "negatively regulates") -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) -InverseObjectProperties( ) - -# Object Property: (positively regulates) - -AnnotationAssertion( "p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q.") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "positively regulates (process to process)") -AnnotationAssertion( ) -AnnotationAssertion( "RO:0002213") -AnnotationAssertion( "external") -AnnotationAssertion( "positively_regulates") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "positively_regulates") -AnnotationAssertion(rdfs:label "positively regulates"@en) -AnnotationAssertion(rdfs:label "positively regulates") -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) -InverseObjectProperties( ) -TransitiveObjectProperty() - -# Object Property: (capable of) - -AnnotationAssertion( "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)") -AnnotationAssertion( "osteoclast SubClassOf 'capable of' some 'bone resorption'") -AnnotationAssertion( "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. ") -AnnotationAssertion( ) -AnnotationAssertion( "has function realized in") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\".") -AnnotationAssertion( "RO:0002215") -AnnotationAssertion( "external") -AnnotationAssertion( "uberon") -AnnotationAssertion( "capable_of") -AnnotationAssertion( ) -AnnotationAssertion( "capable_of") -AnnotationAssertion(rdfs:label "capable of"@en) -AnnotationAssertion(rdfs:label "capable of") -SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (capable of part of) - -AnnotationAssertion( "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.") -AnnotationAssertion( ) -AnnotationAssertion( "has function in") -AnnotationAssertion( "RO:0002216") -AnnotationAssertion( "external") -AnnotationAssertion( "uberon") -AnnotationAssertion( "capable_of_part_of") -AnnotationAssertion( "capable_of_part_of") -AnnotationAssertion(rdfs:label "capable of part of"@en) -AnnotationAssertion(rdfs:label "capable of part of") -AnnotationAssertion(rdfs:seeAlso ) -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) - -# Object Property: (temporally related to) - -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends.") -AnnotationAssertion( "https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1"^^xsd:anyURI) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.") -AnnotationAssertion(rdfs:label "temporally related to"@en) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (has input) - -AnnotationAssertion( ) -AnnotationAssertion( "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.") -AnnotationAssertion( ) -AnnotationAssertion( "consumes") -AnnotationAssertion( "RO:0002233") -AnnotationAssertion( "external") -AnnotationAssertion( "has_input") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "has_input") -AnnotationAssertion(rdfs:label "has input"@en) -AnnotationAssertion(rdfs:label "has input") -SubObjectPropertyOf( ) -InverseObjectProperties( ) -ObjectPropertyDomain( ) - -# Object Property: (acts upstream of) - -AnnotationAssertion( "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision.") -AnnotationAssertion( "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "acts upstream of") -AnnotationAssertion(rdfs:seeAlso ) -SubObjectPropertyOf( ) - -# Object Property: (acts upstream of or within) - -AnnotationAssertion( "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway.") -AnnotationAssertion( "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.") -AnnotationAssertion( "affects") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "acts upstream of or within") -AnnotationAssertion(rdfs:seeAlso ) -SubObjectPropertyOf( ) - -# Object Property: (causally upstream of, positive effect) - -AnnotationAssertion( "p is causally upstream of, positive effect q iff p is casually upstream of q, and the execution of p is required for the execution of q.") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "RO:0002304") -AnnotationAssertion( "external") -AnnotationAssertion( "causally_upstream_of,_positive_effect") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "causally_upstream_of,_positive_effect") -AnnotationAssertion(rdfs:comment "holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y") -AnnotationAssertion(rdfs:label "causally upstream of, positive effect") -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) - -# Object Property: (causally upstream of, negative effect) - -AnnotationAssertion( "p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q.") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "RO:0002305") -AnnotationAssertion( "external") -AnnotationAssertion( "causally_upstream_of,_negative_effect") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "causally_upstream_of,_negative_effect") -AnnotationAssertion(rdfs:label "causally upstream of, negative effect") -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) - -# Object Property: (characteristic of part of) - -AnnotationAssertion( "q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w.") -AnnotationAssertion( "Because part_of is transitive, inheres in is a sub-relation of characteristic of part of") -AnnotationAssertion( ) -AnnotationAssertion( "inheres in part of") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "characteristic of part of"@en) -AnnotationAssertion(rdfs:seeAlso ) -SubObjectPropertyOf( ) - -# Object Property: (mereotopologically related to) - -AnnotationAssertion( "A mereological relationship or a topological relationship") -AnnotationAssertion( ) -AnnotationAssertion( "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "mereotopologically related to"@en) - -# Object Property: (enables) - -AnnotationAssertion( "a particular instances of akt-2 enables some instance of protein kinase activity") -AnnotationAssertion( "c enables p iff c is capable of p and c acts to execute p.") -AnnotationAssertion( ) -AnnotationAssertion( "catalyzes") -AnnotationAssertion( "executes") -AnnotationAssertion( "has") -AnnotationAssertion( "is catalyzing") -AnnotationAssertion( "is executing") -AnnotationAssertion( "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "enables"@en) -SubObjectPropertyOf( ) -InverseObjectProperties( ) - -# Object Property: (functionally related to) - -AnnotationAssertion( "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.") -AnnotationAssertion( ) -AnnotationAssertion( "This is a grouping relation that collects relations used for the purpose of connecting structure and function") -AnnotationAssertion( "RO:0002328") -AnnotationAssertion( "uberon") -AnnotationAssertion( "functionally_related_to") -AnnotationAssertion( "functionally_related_to") -AnnotationAssertion(rdfs:label "functionally related to"@en) -AnnotationAssertion(rdfs:label "functionally related to") - -# Object Property: (part of structure that is capable of) - -AnnotationAssertion( "this relation holds between c and p when c is part of some c', and c' is capable of p.") -AnnotationAssertion( ) -AnnotationAssertion( "false"^^xsd:boolean) -AnnotationAssertion(rdfs:label "part of structure that is capable of"@en) -SubObjectPropertyOf( ) - -# Object Property: (involved in) - -AnnotationAssertion( "c involved_in p if and only if c enables some process p', and p' is part of p") -AnnotationAssertion( ) -AnnotationAssertion( "actively involved in") -AnnotationAssertion( "enables part of") -AnnotationAssertion(rdfs:label "involved in"@en) -AnnotationAssertion(rdfs:seeAlso ) -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) - -# Object Property: (enabled by) - -AnnotationAssertion( "inverse of enables") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "enabled by"@en) -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) - -# Object Property: (regulated by) - -AnnotationAssertion( "inverse of regulates") -AnnotationAssertion( ) -AnnotationAssertion( "regulated by (processual)") -AnnotationAssertion( "RO:0002334") -AnnotationAssertion( "external") -AnnotationAssertion( "regulated_by") -AnnotationAssertion( ) -AnnotationAssertion( "regulated_by") -AnnotationAssertion(rdfs:label "regulated by"@en) -AnnotationAssertion(rdfs:label "regulated by") -SubObjectPropertyOf( ) -TransitiveObjectProperty() -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (negatively regulated by) - -AnnotationAssertion( "inverse of negatively regulates") -AnnotationAssertion( ) -AnnotationAssertion( "RO:0002335") -AnnotationAssertion( "external") -AnnotationAssertion( "negatively_regulated_by") -AnnotationAssertion( ) -AnnotationAssertion( "negatively_regulated_by") -AnnotationAssertion(rdfs:label "negatively regulated by"@en) -AnnotationAssertion(rdfs:label "negatively regulated by") -SubObjectPropertyOf( ) - -# Object Property: (positively regulated by) - -AnnotationAssertion( "inverse of positively regulates") -AnnotationAssertion( ) -AnnotationAssertion( "RO:0002336") -AnnotationAssertion( "external") -AnnotationAssertion( "positively_regulated_by") -AnnotationAssertion( ) -AnnotationAssertion( "positively_regulated_by") -AnnotationAssertion(rdfs:label "positively regulated by"@en) -AnnotationAssertion(rdfs:label "positively regulated by") -SubObjectPropertyOf( ) - -# Object Property: (input of) - -AnnotationAssertion( "inverse of has input") -AnnotationAssertion( ) -AnnotationAssertion( "RO:0002352") -AnnotationAssertion( "uberon") -AnnotationAssertion( "input_of") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "input_of") -AnnotationAssertion(rdfs:label "input of"@en) -AnnotationAssertion(rdfs:label "input of") -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) - -# Object Property: (causally downstream of) - -AnnotationAssertion( ) -AnnotationAssertion( "inverse of upstream of") -AnnotationAssertion( ) -AnnotationAssertion( "RO:0002404") -AnnotationAssertion( "external") -AnnotationAssertion( "causally_downstream_of") -AnnotationAssertion( "causally_downstream_of") -AnnotationAssertion(rdfs:label "causally downstream of"@en) -AnnotationAssertion(rdfs:label "causally downstream of") -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) -InverseObjectProperties( ) - -# Object Property: (immediately causally downstream of) - -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "RO:0002405") -AnnotationAssertion( "external") -AnnotationAssertion( "immediately_causally_downstream_of") -AnnotationAssertion( "immediately_causally_downstream_of") -AnnotationAssertion(rdfs:label "immediately causally downstream of"@en) -AnnotationAssertion(rdfs:label "immediately causally downstream of") -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) -InverseObjectProperties( ) - -# Object Property: (indirectly positively regulates) - -AnnotationAssertion( "p indirectly positively regulates q iff p is indirectly causally upstream of q and p positively regulates q.") -AnnotationAssertion( ) -AnnotationAssertion( "indirectly activates") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "indirectly positively regulates"@en) -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) -TransitiveObjectProperty() - -# Object Property: (indirectly negatively regulates) - -AnnotationAssertion( "p indirectly negatively regulates q iff p is indirectly causally upstream of q and p negatively regulates q.") -AnnotationAssertion( ) -AnnotationAssertion( "indirectly inhibits") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "indirectly negatively regulates"@en) -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) -TransitiveObjectProperty() - -# Object Property: (causally related to) - -AnnotationAssertion(Annotation( "https://en.wikipedia.org/wiki/Causality") "relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause.") -AnnotationAssertion( "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. - -To define causal relations in an activity-flow type network, we make use of 3 primitives: - - * Temporal: how do the intervals of the two occurrents relate? - * Is the causal relation regulatory? - * Is the influence positive or negative? - -The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified. - -For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule. - -For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral. - -Each of these 3 primitives can be composed to yield a cross-product of different relation types.") -AnnotationAssertion( ) -AnnotationAssertion( "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.") -AnnotationAssertion(rdfs:label "causally related to"@en) - -# Object Property: (causally upstream of) - -AnnotationAssertion( "p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q.") -AnnotationAssertion( ) -AnnotationAssertion( "RO:0002411") -AnnotationAssertion( "external") -AnnotationAssertion( "causally_upstream_of") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "causally_upstream_of") -AnnotationAssertion(rdfs:label "causally upstream of"@en) -AnnotationAssertion(rdfs:label "causally upstream of") -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) -TransitiveObjectProperty() - -# Object Property: (immediately causally upstream of) - -AnnotationAssertion( "p is immediately causally upstream of q iff p is causally upstream of q, and the end of p is coincident with the beginning of q.") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "RO:0002412") -AnnotationAssertion( "external") -AnnotationAssertion( "immediately_causally_upstream_of") -AnnotationAssertion( "immediately_causally_upstream_of") -AnnotationAssertion(rdfs:label "immediately causally upstream of"@en) -AnnotationAssertion(rdfs:label "immediately causally upstream of") -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) - -# Object Property: (causally upstream of or within) - -AnnotationAssertion( "p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q.") -AnnotationAssertion( "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2") -AnnotationAssertion( ) -AnnotationAssertion( "influences (processual)") -AnnotationAssertion( "RO:0002418") -AnnotationAssertion( "external") -AnnotationAssertion( "affects") -AnnotationAssertion( "causally_upstream_of_or_within") -AnnotationAssertion( "causally_upstream_of_or_within") -AnnotationAssertion(rdfs:label "causally upstream of or within") -SubObjectPropertyOf( ) -InverseObjectProperties( ) -TransitiveObjectProperty() - -# Object Property: (causally downstream of or within) - -AnnotationAssertion( "inverse of causally upstream of or within") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "RO:0002427") -AnnotationAssertion( "external") -AnnotationAssertion( "causally_downstream_of_or_within") -AnnotationAssertion( ) -AnnotationAssertion( "causally_downstream_of_or_within") -AnnotationAssertion(rdfs:label "causally downstream of or within") -SubObjectPropertyOf( ) -TransitiveObjectProperty() - -# Object Property: (involved in regulation of) - -AnnotationAssertion( "c involved in regulation of p if c is involved in some p' and p' regulates some p") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "involved in regulation of") -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) - -# Object Property: (involved in positive regulation of) - -AnnotationAssertion( "c involved in regulation of p if c is involved in some p' and p' positively regulates some p") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "involved in positive regulation of") -SubObjectPropertyOf( ) - -# Object Property: (involved in negative regulation of) - -AnnotationAssertion( "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "involved in negative regulation of") -SubObjectPropertyOf( ) - -# Object Property: (involved in or involved in regulation of) - -AnnotationAssertion( "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p") -AnnotationAssertion( "OWL does not allow defining object properties via a Union") -AnnotationAssertion( ) -AnnotationAssertion( "involved in or reguates") -AnnotationAssertion(rdfs:label "involved in or involved in regulation of") -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) - -# Object Property: (interacts with) - -AnnotationAssertion( "A relationship that holds between two entities in which the processes executed by the two entities are causally connected.") -AnnotationAssertion( "Considering relabeling as 'pairwise interacts with'"^^xsd:anyURI) -AnnotationAssertion( "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact.") -AnnotationAssertion( ) -AnnotationAssertion( "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules.") -AnnotationAssertion( "in pairwise interaction with") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "interacts with") -AnnotationAssertion(rdfs:seeAlso "http://purl.obolibrary.org/obo/ro/docs/interaction-relations/"^^xsd:anyURI) -AnnotationAssertion( "http://purl.obolibrary.org/obo/MI_0914"^^xsd:anyURI) -SymmetricObjectProperty() -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (molecularly interacts with) - -AnnotationAssertion( "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.") -AnnotationAssertion( ) -AnnotationAssertion( "binds") -AnnotationAssertion( "molecularly binds with") -AnnotationAssertion(rdfs:label "molecularly interacts with") -AnnotationAssertion(rdfs:seeAlso ) -AnnotationAssertion( "http://purl.obolibrary.org/obo/MI_0915"^^xsd:anyURI) -SubObjectPropertyOf( ) -SymmetricObjectProperty() - -# Object Property: (phosphorylates) - -AnnotationAssertion( "Axiomatization to GO to be added later") -AnnotationAssertion( ) -AnnotationAssertion( "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y.") -AnnotationAssertion(rdfs:label "phosphorylates") -SubObjectPropertyOf( ) - -# Object Property: (directly regulates activity of) - -AnnotationAssertion( "The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B. - -A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B.") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "molecularly controls") -AnnotationAssertion(rdfs:label "directly regulates activity of") -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (directly negatively regulates activity of) - -AnnotationAssertion( "The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B. -For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "directly inhibits") -AnnotationAssertion( "molecularly decreases activity of") -AnnotationAssertion(rdfs:label "directly negatively regulates activity of") -SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (directly positively regulates activity of) - -AnnotationAssertion( "The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B. -For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "directly activates") -AnnotationAssertion( "molecularly increases activity of") -AnnotationAssertion(rdfs:label "directly positively regulates activity of") -SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (helper property (not for use in curation)) - -AnnotationAssertion( ) -AnnotationAssertion( "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning.") -AnnotationAssertion(rdfs:label "helper property (not for use in curation)") - -# Object Property: (is kinase activity) - -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "is kinase activity") -SubObjectPropertyOf( ) - -# Object Property: (causal agent in process) - -AnnotationAssertion( "A relationship between a material entity and a process where the material entity has some causal role that influences the process") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "causal agent in process") -SubObjectPropertyOf( ) -InverseObjectProperties( ) - -# Object Property: (causal relation between processes) - -AnnotationAssertion( "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q.") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.") -AnnotationAssertion(rdfs:label "causal relation between processes") -SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (depends on) - -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "depends on") -AnnotationAssertion(rdfs:seeAlso ) - -# Object Property: (causal relation between entities) - -AnnotationAssertion( "The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.") -AnnotationAssertion(rdfs:label "causal relation between entities") -SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (causally influenced by) - -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "causally influenced by (entity-centric)") -AnnotationAssertion(rdfs:label "causally influenced by") -SubObjectPropertyOf( ) -InverseObjectProperties( ) - -# Object Property: (interaction relation helper property) - -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "interaction relation helper property") -AnnotationAssertion(rdfs:seeAlso ) -AnnotationAssertion(rdfs:seeAlso "http://purl.obolibrary.org/obo/ro/docs/interaction-relations/"^^xsd:anyURI) -SubObjectPropertyOf( ) - -# Object Property: (molecular interaction relation helper property) - -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "molecular interaction relation helper property") -SubObjectPropertyOf( ) - -# Object Property: (causally influences) - -AnnotationAssertion( "The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size).") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "causally influences (entity-centric)") -AnnotationAssertion(rdfs:label "causally influences") -SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (directly regulates) - -AnnotationAssertion( "p directly regulates q iff p is immediately causally upstream of q and p regulates q.") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "directly regulates (processual)") -AnnotationAssertion( ) -AnnotationAssertion( "RO:0002578") -AnnotationAssertion( "external") -AnnotationAssertion( "directly_regulates") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "directly_regulates") -AnnotationAssertion(rdfs:label "directly regulates") -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) - -# Object Property: (has part structure that is capable of) - -AnnotationAssertion( "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'") -AnnotationAssertion( "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "has part structure that is capable of") -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) - -# Object Property: (causal relation between material entity and a process) - -AnnotationAssertion( "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.") -AnnotationAssertion( "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "causal relation between material entity and a process") -SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (capable of regulating) - -AnnotationAssertion( "pyrethroid -> growth") -AnnotationAssertion( "Holds between c and p if and only if c is capable of some activity a, and a regulates p.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "capable of regulating") -SubObjectPropertyOf( ) - -# Object Property: (capable of negatively regulating) - -AnnotationAssertion( "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "capable of negatively regulating") -SubObjectPropertyOf( ) - -# Object Property: (capable of positively regulating) - -AnnotationAssertion( "renin -> arteriolar smooth muscle contraction") -AnnotationAssertion( "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "capable of positively regulating") -SubObjectPropertyOf( ) - -# Object Property: (process has causal agent) - -AnnotationAssertion( "Inverse of 'causal agent in process'") -AnnotationAssertion( ) -AnnotationAssertion( "RO:0002608") -AnnotationAssertion( "external") -AnnotationAssertion( "process_has_causal_agent") -AnnotationAssertion( "process_has_causal_agent") -AnnotationAssertion(rdfs:label "process has causal agent") -SubObjectPropertyOf( ) - -# Object Property: (directly positively regulates) - -AnnotationAssertion( "p directly positively regulates q iff p is immediately causally upstream of q, and p positively regulates q.") -AnnotationAssertion( ) -AnnotationAssertion( "directly positively regulates (process to process)") -AnnotationAssertion( ) -AnnotationAssertion( "RO:0002629") -AnnotationAssertion( "external") -AnnotationAssertion( "directly_positively_regulates") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "directly_positively_regulates") -AnnotationAssertion(rdfs:label "directly positively regulates") -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) - -# Object Property: (directly negatively regulates) - -AnnotationAssertion( "p directly negatively regulates q iff p is immediately causally upstream of q, and p negatively regulates q.") -AnnotationAssertion( ) -AnnotationAssertion( "directly negatively regulates (process to process)") -AnnotationAssertion( ) -AnnotationAssertion( "RO:0002630") -AnnotationAssertion( "external") -AnnotationAssertion( "directly_negatively_regulates") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "directly_negatively_regulates") -AnnotationAssertion(rdfs:label "directly negatively regulates") -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) - -# Object Property: (enables subfunction) - -AnnotationAssertion( "Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P.") -AnnotationAssertion( ) -AnnotationAssertion( "2018-01-25T23:20:13Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label "enables subfunction") -SubObjectPropertyOf( ) - -# Object Property: (acts upstream of or within, positive effect) - -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "2018-01-26T23:49:30Z"^^xsd:dateTime) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "acts upstream of or within, positive effect") -AnnotationAssertion(rdfs:seeAlso ) -SubObjectPropertyOf( ) - -# Object Property: (acts upstream of or within, negative effect) - -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "2018-01-26T23:49:51Z"^^xsd:dateTime) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "acts upstream of or within, negative effect") -SubObjectPropertyOf( ) - -# Object Property: (acts upstream of, positive effect) - -AnnotationAssertion( "c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "2018-01-26T23:53:14Z"^^xsd:dateTime) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "acts upstream of, positive effect") -AnnotationAssertion(rdfs:seeAlso ) -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) - -# Object Property: (acts upstream of, negative effect) - -AnnotationAssertion( "c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "2018-01-26T23:53:22Z"^^xsd:dateTime) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "acts upstream of, negative effect") -AnnotationAssertion(rdfs:seeAlso ) -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) - -# Object Property: (causally upstream of or within, negative effect) - -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "2018-03-13T23:55:05Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label "causally upstream of or within, negative effect") -SubObjectPropertyOf( ) - -# Object Property: (causally upstream of or within, positive effect) - -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "2018-03-13T23:55:19Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label "causally upstream of or within, positive effect") -SubObjectPropertyOf( ) - -# Object Property: (regulates activity of) - -AnnotationAssertion( "The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B.") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "regulates activity of") -SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (indirectly causally upstream of) - -AnnotationAssertion( "p is indirectly causally upstream of q iff p is causally upstream of q and there exists some process r such that p is causally upstream of r and r is causally upstream of q.") -AnnotationAssertion( "pg") -AnnotationAssertion( "2022-09-26T06:07:17Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label "indirectly causally upstream of"@en) -SubObjectPropertyOf( ) - -# Object Property: (indirectly regulates) - -AnnotationAssertion( "p indirectly regulates q iff p is indirectly causally upstream of q and p regulates q.") -AnnotationAssertion( "pg") -AnnotationAssertion( "2022-09-26T06:08:01Z"^^xsd:dateTime) -AnnotationAssertion(rdfs:label "indirectly regulates"@en) -SubObjectPropertyOf( ) -SubObjectPropertyOf( ) - -# Object Property: (device utilizes material) - -AnnotationAssertion( "A diagnostic testing device utilizes a specimen.") -AnnotationAssertion( "X device utilizes material Y means X and Y are material entities, and X is capable of some process P that has input Y.") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input.") -AnnotationAssertion( "See github ticket https://github.com/oborel/obo-relations/issues/497") -AnnotationAssertion( "2021-11-08T12:00:00Z") -AnnotationAssertion( "utilizes") -AnnotationAssertion(rdfs:label "device utilizes material"@en) - -# Object Property: (regulates characteristic) - -AnnotationAssertion( "A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C.") -AnnotationAssertion( ) -AnnotationAssertion( "RO:0019000") -AnnotationAssertion( "gene_ontology") -AnnotationAssertion( "regulates_characteristic") -AnnotationAssertion( "regulates_characteristic") -AnnotationAssertion(rdfs:label "regulates characteristic") -SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) - -# Object Property: (positively regulates characteristic) - -AnnotationAssertion( "A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C.") -AnnotationAssertion( ) -AnnotationAssertion( "RO:0019001") -AnnotationAssertion( "gene_ontology") -AnnotationAssertion( "positively_regulates_characteristic") -AnnotationAssertion( "positively_regulates_characteristic") -AnnotationAssertion(rdfs:label "positively regulates characteristic") -SubObjectPropertyOf( ) - -# Object Property: (negatively regulates characteristic) - -AnnotationAssertion( "A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C.") -AnnotationAssertion( ) -AnnotationAssertion( "RO:0019002") -AnnotationAssertion( "gene_ontology") -AnnotationAssertion( "negatively_regulates_characteristic") -AnnotationAssertion( "negatively_regulates_characteristic") -AnnotationAssertion(rdfs:label "negatively regulates characteristic") -SubObjectPropertyOf( ) - - - -############################ -# Classes -############################ - -# Class: (continuant) - -AnnotationAssertion( "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts."@en) -AnnotationAssertion(rdfs:label "continuant"@en) -SubClassOf( ObjectAllValuesFrom( )) -DisjointClasses( ) -DisjointClasses( ObjectSomeValuesFrom( )) - -# Class: (occurrent) - -AnnotationAssertion( "An entity that has temporal parts and that happens, unfolds or develops through time."@en) -AnnotationAssertion(rdfs:label "occurrent"@en) -SubClassOf( ObjectAllValuesFrom( )) -DisjointClasses( ObjectSomeValuesFrom( )) - -# Class: (independent continuant) - -AnnotationAssertion( "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything."@en) -AnnotationAssertion(rdfs:label "independent continuant"@en) -SubClassOf( ) -SubClassOf( ObjectAllValuesFrom( )) -DisjointClasses( ) - -# Class: (process) - -AnnotationAssertion( "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t."@en) -AnnotationAssertion(rdfs:label "process"@en) -SubClassOf( ) - -# Class: (disposition) - -AnnotationAssertion(rdfs:label "disposition"@en) -SubClassOf( ) -DisjointClasses( ) - -# Class: (realizable entity) - -AnnotationAssertion( "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances."@en) -AnnotationAssertion(rdfs:label "realizable entity"@en) -SubClassOf( ) -SubClassOf( ObjectAllValuesFrom( )) -DisjointClasses( ) - -# Class: (quality) - -AnnotationAssertion(rdfs:label "quality"@en) -SubClassOf( ) -SubClassOf( ObjectAllValuesFrom( )) - -# Class: (specifically dependent continuant) - -AnnotationAssertion( "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same."@en) -AnnotationAssertion(rdfs:label "specifically dependent continuant"@en) -SubClassOf( ) -SubClassOf( ObjectAllValuesFrom( )) - -# Class: (role) - -AnnotationAssertion( "A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts."@en) -AnnotationAssertion(rdfs:label "role"@en) -EquivalentClasses( ) -SubClassOf( ) - -# Class: (function) - -AnnotationAssertion(rdfs:label "function"@en) -SubClassOf( ) - -# Class: (material entity) - -AnnotationAssertion( "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time."@en) -AnnotationAssertion(rdfs:label "material entity"@en) -SubClassOf( ) - -# Class: (role) - -AnnotationAssertion( "A role is particular behaviour which a material entity may exhibit.") -AnnotationAssertion( "chebi_ontology") -AnnotationAssertion( "CHEBI:50906") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "role") -SubClassOf( ) - -# Class: (molecular_function) - -AnnotationAssertion(Annotation( "GOC:pdt") "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs.") -AnnotationAssertion( "GO:0005554") -AnnotationAssertion( "molecular function") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0003674") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex.") -AnnotationAssertion(rdfs:label "molecular_function") -SubClassOf( ) -DisjointClasses( ) - -# Class: (catalytic activity) - -AnnotationAssertion(Annotation( "GOC:vw") Annotation( "ISBN:0198506732") "Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.") -AnnotationAssertion( "Wikipedia:Enzyme") -AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "enzyme activity") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0003824") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "catalytic activity") -SubClassOf( ) - -# Class: (biological_process) - -AnnotationAssertion(Annotation( "GOC:pdt") "A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/24968"^^xsd:anyURI) -AnnotationAssertion( "jl") -AnnotationAssertion( "2012-09-19T15:05:24Z") -AnnotationAssertion( "GO:0000004") -AnnotationAssertion( "GO:0007582") -AnnotationAssertion( "GO:0044699") -AnnotationAssertion( "Wikipedia:Biological_process") -AnnotationAssertion( "biological process") -AnnotationAssertion( "physiological process") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "single organism process") -AnnotationAssertion( "single-organism process") -AnnotationAssertion( "GO:0008150") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.") -AnnotationAssertion(rdfs:label "biological_process") -SubClassOf( ) - -# Class: (kinase activity) - -AnnotationAssertion(Annotation( "ISBN:0198506732") "Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.") -AnnotationAssertion(Annotation(rdfs:label "FN3KRP phosphorylates PsiAm, RibAm") "Reactome:R-HSA-6788855") -AnnotationAssertion(Annotation(rdfs:label "FN3K phosphorylates ketosamines") "Reactome:R-HSA-6788867") -AnnotationAssertion( "phosphokinase activity") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0016301") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term.") -AnnotationAssertion(rdfs:label "kinase activity") -SubClassOf( ) -SubClassOf( ObjectHasSelf()) - -# Class: (transferase activity) - -AnnotationAssertion(Annotation( "ISBN:0198506732") "Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.") -AnnotationAssertion( "EC:2.-.-.-") -AnnotationAssertion(Annotation(rdfs:label "PE is converted to PS by PTDSS2") "Reactome:R-HSA-1483089") -AnnotationAssertion(Annotation(rdfs:label "PC is converted to PS by PTDSS1") "Reactome:R-HSA-1483186") -AnnotationAssertion(Annotation(rdfs:label "TRAF2 ubiquitinates cIAP1,2 in cIAP1,2:TRAF1:TRAF2:TRAF3:NIK") "Reactome:R-HSA-5668414") -AnnotationAssertion(Annotation(rdfs:label "TSR3 transfers aminocarboxypropyl group from S-adenosylmethionine to N(1)-methylpseudouridine-1248 of 18SE rRNA yielding N(1)-methyl-N(3)-aminocarboxypropylpseudouridine-1248") "Reactome:R-HSA-8868783") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0016740") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "transferase activity") -SubClassOf( ) - -# Class: (transferase activity, transferring phosphorus-containing groups) - -AnnotationAssertion(Annotation( "GOC:jl") Annotation( "ISBN:0198506732") "Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).") -AnnotationAssertion( "EC:2.7.-.-") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0016772") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:comment "Note that this term encompasses all kinase activities, as well as activities that transfer other phosphorus-containing groups such as diphosphate or nucleotides.") -AnnotationAssertion(rdfs:label "transferase activity, transferring phosphorus-containing groups") -SubClassOf( ) - -# Class: (quality) - -AnnotationAssertion(Annotation( "PATOC:GVG") "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities") -AnnotationAssertion( "PATO:0000072") -AnnotationAssertion( "quality") -AnnotationAssertion( "PATO:0000001") -AnnotationAssertion(rdfs:label "quality") -SubClassOf( ) - - -SubClassOf(ObjectSomeValuesFrom( ) ObjectUnionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(Annotation( "true"^^xsd:boolean) ObjectPropertyChain( ) ) -SubObjectPropertyOf(Annotation( "true"^^xsd:boolean) ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(Annotation( "true"^^xsd:boolean) ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(Annotation( "true"^^xsd:boolean) ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation( "true"^^xsd:boolean) Annotation(rdfs:comment "MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z") Annotation(rdfs:label "infer input from direct reg") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:comment "GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z), -e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'") Annotation(rdfs:label "enabling an MF enables its parts") Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation( "true"^^xsd:boolean) Annotation(rdfs:comment "GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'") Annotation(rdfs:label "involved in BP") Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:comment "If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.") Annotation(rdfs:label "inferring direct reg edge from input to regulatory subfunction") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "inferring direct neg reg edge from input to regulatory subfunction") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "inferring direct positive reg edge from input to regulatory subfunction") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "effector input is compound function input") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "Input of effector is input of its parent MF") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:comment "if effector directly regulates X, its parent MF directly regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:comment "if effector directly positively regulates X, its parent MF directly positively regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "if effector directly negatively regulates X, its parent MF directly negatively regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable()))) -DLSafeRule(Annotation(rdfs:label "'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -) \ No newline at end of file diff --git a/src/ontology/imports/pato_terms.txt b/src/ontology/imports/pato_terms.txt deleted file mode 100644 index 8b13789..0000000 --- a/src/ontology/imports/pato_terms.txt +++ /dev/null @@ -1 +0,0 @@ - diff --git a/src/ontology/nmrCV-edit.owl b/src/ontology/nmrCV-edit.owl index 776a76c..fc167f1 100644 --- a/src/ontology/nmrCV-edit.owl +++ b/src/ontology/nmrCV-edit.owl @@ -15,11 +15,8 @@ Prefix(oboInOwl:=) Ontology( Import() -Import() -Import() -Import() +Import() Import() -Import() Import() Annotation(dce:contributor "Annick Moing") Annotation(dce:contributor "Catherine Deborde") @@ -835,6 +832,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class(oboInOwl:ObsoleteClass)) Declaration(AnnotationProperty(obo:IAO_0000115)) Declaration(AnnotationProperty(dce:coverage)) Declaration(AnnotationProperty(dcterms:description)) @@ -859,6 +857,7 @@ Declaration(AnnotationProperty(oboInOwl:hasExactSynonym)) Declaration(AnnotationProperty(oboInOwl:hasOBOFormatVersion)) Declaration(AnnotationProperty(oboInOwl:hasOBONamespace)) Declaration(AnnotationProperty(oboInOwl:id)) +Declaration(AnnotationProperty(oboInOwl:is_inferred)) Declaration(AnnotationProperty(oboInOwl:saved-by)) Declaration(AnnotationProperty(rdfs:label)) Declaration(AnnotationProperty(skos:altLabel)) @@ -885,6 +884,7 @@ AnnotationAssertion(rdfs:label dcterms:title "title") + ############################ # Classes ############################ @@ -993,24 +993,35 @@ SubClassOf( "peak processing"@en) SubClassOf( ) -# Class: (Hexafluorobenzene) +# Class: (obsolete_Hexafluorobenzene) -AnnotationAssertion(rdfs:label "Hexafluorobenzene"@en) -SubClassOf( ) -SubClassOf( ) +AnnotationAssertion(obo:IAO_0000116 "Deprecated in favor of CHEBI equivalent class.") +AnnotationAssertion(obo:IAO_0000231 obo:IAO_0000228) +AnnotationAssertion(obo:IAO_0100001 obo:CHEBI_38589) +AnnotationAssertion(rdfs:label "obsolete_Hexafluorobenzene"@en) +AnnotationAssertion(owl:deprecated "true"^^xsd:boolean) +SubClassOf( oboInOwl:ObsoleteClass) -# Class: (Chloroform-d) +# Class: (obsolete_Chloroform-d) +AnnotationAssertion(obo:IAO_0000116 "Deprecated in favor of CHEBI equivalent class.") +AnnotationAssertion(obo:IAO_0000231 obo:IAO_0000228) +AnnotationAssertion(obo:IAO_0100001 obo:CHEBI_85365) AnnotationAssertion(oboInOwl:hasExactSynonym "CDCl3") -AnnotationAssertion(rdfs:label "Chloroform-d"@en) -SubClassOf( ) +AnnotationAssertion(rdfs:label "obsolete_Chloroform-d"@en) +AnnotationAssertion(owl:deprecated "true"^^xsd:boolean) +SubClassOf( oboInOwl:ObsoleteClass) -# Class: (heavy water) +# Class: (obsolete_heavy water) +AnnotationAssertion(obo:IAO_0000116 "Deprecated in favor of CHEBI equivalent class.") +AnnotationAssertion(obo:IAO_0000231 obo:IAO_0000228) +AnnotationAssertion(obo:IAO_0100001 obo:CHEBI_41981) AnnotationAssertion(oboInOwl:consider "CHEBI:41981") AnnotationAssertion(oboInOwl:hasExactSynonym "D2O") -AnnotationAssertion(rdfs:label "heavy water"@en) -SubClassOf( ) +AnnotationAssertion(rdfs:label "obsolete_heavy water"@en) +AnnotationAssertion(owl:deprecated "true"^^xsd:boolean) +SubClassOf( oboInOwl:ObsoleteClass) # Class: (sample pH) @@ -1408,7 +1419,6 @@ SubClassOf( "JRES spectrum") AnnotationAssertion(rdfs:label "2D J-resolved spectrum"@en) -SubClassOf( ) SubClassOf( ) # Class: (MetaboLab software) @@ -2726,15 +2736,16 @@ SubClassOf( (NMR solvent) -AnnotationAssertion(rdfs:comment "Use Chebi entities here.") +AnnotationAssertion(obo:IAO_0000115 "A molecular entity that is used as a solvent in nuclear magnetic resonance (NMR) spectroscopy."@en) AnnotationAssertion(rdfs:label "NMR solvent"@en) -SubClassOf( obo:BFO_0000030) +EquivalentClasses( ObjectIntersectionOf(obo:CHEBI_23367 ObjectSomeValuesFrom(obo:RO_0000087 obo:CHEBI_197449))) +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_23367) # Class: (NMR buffer) AnnotationAssertion(rdfs:comment "Use Chebi entities here.") AnnotationAssertion(rdfs:label "NMR buffer"@en) -SubClassOf( obo:BFO_0000030) +SubClassOf( obo:CHEBI_23367) # Class: (presat water suppression) @@ -4284,22 +4295,21 @@ AnnotationAssertion(rdfs:comment "def: A co AnnotationAssertion(rdfs:label "buffer information") SubClassOf( ) -# Class: (calibration compound) +# Class: (shift calibration compound) -AnnotationAssertion(oboInOwl:hasExactSynonym "reference compound") -AnnotationAssertion(oboInOwl:hasExactSynonym "reference standard") AnnotationAssertion(rdfs:comment "def: The compound that produced the peak used to reference a spectrum during data pre-processing.") -AnnotationAssertion(rdfs:label "calibration compound") -SubClassOf( ) +AnnotationAssertion(rdfs:label "shift calibration compound") +SubClassOf( obo:CHEBI_23367) -# Class: (chemical shift standard) +# Class: (chemical shift reference compound) AnnotationAssertion(dce:source "http://www.nmrnotes.org/NMRPages/refcomps.html") AnnotationAssertion(doap:bug-database "https://github.com/nmrML/nmrML/issues/31") AnnotationAssertion(doap:bug-database "https://github.com/nmrML/nmrML/issues/33") -AnnotationAssertion(oboInOwl:hasExactSynonym "chemical shift reference compound") +AnnotationAssertion(oboInOwl:hasExactSynonym "chemical shift standard") AnnotationAssertion(rdfs:comment "def: A compound that is added to an NMR sample to enable the alignment of spectra. The power of NMR is that for most nuclei the NMR frequency changes very slightly with different molecular environment or chemical bonding. These shifts are very small, on the order of 1 part in 10+9. This is referred to as \"Chemical Shift.\" Tables of chemical shifts are tabulated and used to determine molecular structure. Combining NMR chemical shift information with other NMR information such as peak integration, coupling constants and Nuclear Overhauser Enhancement (NOE) can result in complete three-dimensional molecular structures of molecules in solution without using X-ray crystallography.") -AnnotationAssertion(rdfs:label "chemical shift standard") +AnnotationAssertion(rdfs:label "chemical shift reference compound") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom(obo:RO_0000087 obo:CHEBI_228364))) SubClassOf( ) # Class: (quality check compound signal) @@ -4544,7 +4554,7 @@ SubClassOf( "def: The nucleus of an element or isotope that is being studied during an NMR analysis. Common NMR requirements include direct 1D and 2D proton-only NMR, direct observation of 13C NMR with 1H decoupling, direct observation of other nuclei such as 19F, 31P, 29Si, 31P, 27Al, and 15N (with or without 1H decoupling), triple resonance NMR (especially inverse triple resonance such as 1H observe, 13C and 15N decouple), and inverse 2D and 3D experiments such as HMQC and HMBC.") AnnotationAssertion(rdfs:label "acquisition nucleus") -SubClassOf( obo:BFO_0000030) +SubClassOf( obo:CHEBI_23367) # Class: (quality check peak feature) @@ -5681,5 +5691,326 @@ SubClassOf( "acdlabs") SubClassOf( ) +# Class: obo:BFO_0000023 (role) + +EquivalentClasses(obo:BFO_0000023 obo:CHEBI_50906) + +# Class: obo:CHEBI_156265 (methanol-d4) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_156265 ) + +# Class: obo:CHEBI_16134 (ammonia) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_16134 ) + +# Class: obo:CHEBI_16227 (pyridine) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_16227 ) + +# Class: obo:CHEBI_183318 (triphenylphosphine) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_183318 ) + +# Class: obo:CHEBI_193038 (acetonitrile-d3) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193038 ) + +# Class: obo:CHEBI_193039 (benzene-d6) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193039 ) + +# Class: obo:CHEBI_193040 (N,N-dimethylformamide-d7) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193040 ) + +# Class: obo:CHEBI_193041 (dimethyl sulfoxide-d6) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193041 ) + +# Class: obo:CHEBI_193042 (dichloromethane-d2) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193042 ) + +# Class: obo:CHEBI_193043 (ethanol-d6) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193043 ) + +# Class: obo:CHEBI_193044 (nitrobenzene-d5) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193044 ) + +# Class: obo:CHEBI_193045 (nitromethane-d3) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193045 ) + +# Class: obo:CHEBI_193046 (pyridine-d5) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193046 ) + +# Class: obo:CHEBI_193047 (oxolane-d8) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193047 ) + +# Class: obo:CHEBI_193048 (toluene-d8) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193048 ) + +# Class: obo:CHEBI_193049 (acetic acid-d4) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193049 ) + +# Class: obo:CHEBI_193050 (trifluoroacetic acid-d1) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193050 ) + +# Class: obo:CHEBI_193131 (1,1,2-Trichlorotrifluoroethane) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193131 ) + +# Class: obo:CHEBI_193132 (formic acid-d2) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193132 ) + +# Class: obo:CHEBI_193133 (methanol-d1) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193133 ) + +# Class: obo:CHEBI_193134 (1,1,2,2-tetrachlorethane-d2) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193134 ) + +# Class: obo:CHEBI_193135 (dimethyl ether-d6) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193135 ) + +# Class: obo:CHEBI_193136 (fluorosulfonic acid) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193136 ) + +# Class: obo:CHEBI_193146 (antimony pentafluoride) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193146 ) + +# Class: obo:CHEBI_193148 (bromine pentafluoride) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_193148 ) + +# Class: obo:CHEBI_195173 (1-Propanesulfonic acid, 3-(trimethylsilyl)- (sodium salt)) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_195173 ) + +# Class: obo:CHEBI_228806 (3-(trimethylsilyl)propane-1-sulfonate) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_228806 ) + +# Class: obo:CHEBI_229454 (yttrium nitrate) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_229454 ) + +# Class: obo:CHEBI_229455 (dimethylcadmium) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_229455 ) + +# Class: obo:CHEBI_229456 (xenon oxytetrafluoride) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_229456 ) + +# Class: obo:CHEBI_229457 (rhodium acetylacetonate) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_229457 ) + +# Class: obo:CHEBI_229458 (titan(III)-nitrate) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_229458 ) + +# Class: obo:CHEBI_24431 (chemical entity) + +SubClassOf(obo:CHEBI_24431 obo:BFO_0000040) + +# Class: obo:CHEBI_24432 (biological role) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_24432 obo:BFO_0000023) + +# Class: obo:CHEBI_26078 (phosphoric acid) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_26078 ) + +# Class: obo:CHEBI_29228 (hydrogen fluoride) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_29228 ) + +# Class: obo:CHEBI_30183 (tetramethyllead) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_30183 ) + +# Class: obo:CHEBI_30236 (difluorine) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_30236 ) + +# Class: obo:CHEBI_30251 (pentacarbonyliron) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_30251 ) + +# Class: obo:CHEBI_30420 (tetramethyltin) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_30420 ) + +# Class: obo:CHEBI_30496 (sulfur hexafluoride) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_30496 ) + +# Class: obo:CHEBI_30786 (dimethylmercury) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_30786 ) + +# Class: obo:CHEBI_32130 (silver(1+) nitrate) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_32130 ) + +# Class: obo:CHEBI_32954 (sodium acetate) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_32954 ) + +# Class: obo:CHEBI_33093 (boron trifluoride) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_33093 ) + +# Class: obo:CHEBI_33232 (application) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_33232 obo:BFO_0000023) + +# Class: obo:CHEBI_33681 (helium(0)) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_33681 ) + +# Class: obo:CHEBI_34856 (morpholine) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_34856 ) + +# Class: obo:CHEBI_36601 (triphenylphosphane oxide) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_36601 ) + +# Class: obo:CHEBI_36810 ((trifluoromethyl)benzene) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_36810 ) + +# Class: obo:CHEBI_38472 (acetonitrile) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_38472 ) + +# Class: obo:CHEBI_38585 (1,4-difluorobenzene) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_38585 ) + +# Class: obo:CHEBI_38589 (hexafluorobenzene) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_38589 ) +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_38589 ) +SubClassOf(obo:CHEBI_38589 ObjectSomeValuesFrom(obo:RO_0000087 obo:CHEBI_197449)) + +# Class: obo:CHEBI_39429 (hexafluoroacetone) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_39429 ) + +# Class: obo:CHEBI_41981 (dideuterium oxide) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_41981 ) + +# Class: obo:CHEBI_45892 (trifluoroacetic acid) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_45892 ) + +# Class: obo:CHEBI_4610 (dimethylselenide) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_4610 ) + +# Class: obo:CHEBI_4613 (dimethyl telluride) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_4613 ) + +# Class: obo:CHEBI_46324 (trimethyl phosphate) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_46324 ) + +# Class: obo:CHEBI_47032 (1,4-dioxane) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_47032 ) + +# Class: obo:CHEBI_48236 (trichlorofluoromethane) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_48236 ) +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_48236 ) + +# Class: obo:CHEBI_50906 (role) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_50906 obo:BFO_0000017) + +# Class: obo:CHEBI_51086 (chemical role) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_51086 obo:BFO_0000023) + +# Class: obo:CHEBI_5115 (monofluorobenzene) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_5115 ) + +# Class: obo:CHEBI_55317 (tetramethylammonium bromide) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_55317 ) + +# Class: obo:CHEBI_59606 (sodium hexachloroplatinate) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_59606 ) + +# Class: obo:CHEBI_63005 (sodium nitrate) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_63005 ) + +# Class: obo:CHEBI_63940 (sodium tungstate) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_63940 ) + +# Class: obo:CHEBI_66872 (potassium fluoride) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_66872 ) + +# Class: obo:CHEBI_77701 (nitromethane) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_77701 ) + +# Class: obo:CHEBI_78217 (acetone d6) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_78217 ) + +# Class: obo:CHEBI_85361 (tetramethylsilane) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_85361 ) + +# Class: obo:CHEBI_85362 (3-(trimethylsilyl)propane-1-sulfonic acid) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_85362 ) + +# Class: obo:CHEBI_85363 (sodium 3-(trimethylsilyl)propionate) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_85363 ) + +# Class: obo:CHEBI_85364 (ammonium bromide) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_85364 ) + +# Class: obo:CHEBI_85365 (deuterated chloroform) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_85365 ) +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_85365 ) + +# Class: obo:CHEBI_85487 (3-(trimethylsilyl)propionic acid) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_85487 ) + +# Class: obo:CHEBI_88215 (osmium tetroxide) + +SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CHEBI_88215 ) + +SubClassOf(ObjectIntersectionOf(obo:CHEBI_23367 ObjectSomeValuesFrom(obo:RO_0000087 obo:CHEBI_228364)) ) ) \ No newline at end of file diff --git a/src/ontology/nmrCV-odk.yaml b/src/ontology/nmrCV-odk.yaml index 261f5d0..55856b4 100644 --- a/src/ontology/nmrCV-odk.yaml +++ b/src/ontology/nmrCV-odk.yaml @@ -41,9 +41,11 @@ import_group: - id: ro - id: omo module_type: mirror - - id: iao - - id: chmo - - id: pato - - id: obi - + #- id: iao + #- id: chmo + #- id: pato + #- id: obi + - id: chebi + is_large: true + use_gzipped: true