Update eocsyst.ms and import script (#15)

* Update eocsyst.ms and import script

Now includes support for domains and concepts from openAlex

* Add .cypher file extension

* Remove commented-out code

* Setup for pre-commit hooks

* Run pre-commit hooks (ruff) on ecosyst.ms-api.py

* Convert cammel case to snake case

* Improve error checking & thread safety

* Add line comments

* Debugging

* Debugging

Author: eyermt

.gitignore

@@ -1,5 +1,13 @@
 .venv
 
+# Python virtual environment (venv)
+bin/
+lib/
+lib64
+pyvenv.cfg
+
+
+
 .pdm-python
 .DS_Store
 

.pre-commit-config.yaml

@@ -0,0 +1,15 @@
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v5.0.0  # the release, git tag, or commit you want to use
+    hooks:
+      - id: check-toml
+      - id: check-yaml
+      - id: end-of-file-fixer
+      - id: trailing-whitespace
+
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.8.6
+    hooks:
+      - id: ruff
+        args: [--fix, --exit-non-zero-on-fix, --show-fixes]
+      - id: ruff-format

pyproject.toml

@@ -17,6 +17,25 @@ readme = "README.md"
 license = {text = "MIT"}
 
 
+[tool.ruff]
+line-length = 88
+lint.select = [
+    "F",  # pyflakes rules
+    "E",  # pycodestyle error rules
+    "W",  # pycodestyle warning rules
+    "B",  # flake8-bugbear rules
+    "I",  # isort rules
+]
+lint.ignore = [
+    "E501",  # line-too-long
+]
+
+[tool.ruff.format]
+indent-style = "space"
+quote-style = "single"
+
+
+
 [tool.pdm]
 distribution = false