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Imports bringing in errors #20

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shawntanzk opened this issue Dec 13, 2021 · 3 comments
Closed

Imports bringing in errors #20

shawntanzk opened this issue Dec 13, 2021 · 3 comments
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@shawntanzk
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Errors aside from duplicate labels that will be fixed once we add species prefix include a bunch of duplicate def and multiple def from imports

For multiple defs - I would have thought that with base file imports now this would be solved @matentzn? PCL does have latest ODK. Do I need to redirect imports to use basefile somewhere for that to work?

There are duplicate_definition errors - this is from UBERON . issues - this is fixed here (obophenotype/uberon#2129) and I think just needs new UBERON release then import

@shawntanzk shawntanzk self-assigned this Dec 13, 2021
@shawntanzk
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Related to #16

@shawntanzk
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Of note, there is a whole bunch of duplicate_exact_synonym warning - these are generated by having same names from different species, and individuals and class, as the same thing - good example is with VLCM - not sure if this will affect search and all @dosumis - thought I'd imagine it wouldn't be overly bad a thing:

<style> </style>
CL:4023051 oboInOwl:hasExactSynonym VLMC
obo:PCL_0011622 oboInOwl:hasExactSynonym VLMC
obo:PCL_0012126 oboInOwl:hasExactSynonym VLMC
obo:PCL_0012526 oboInOwl:hasExactSynonym VLMC
obo:PCL_0013134 oboInOwl:hasExactSynonym VLMC
obo:PCL_0013509 oboInOwl:hasExactSynonym VLMC
obo:PCL_0013534 oboInOwl:hasExactSynonym VLMC

@shawntanzk
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Fixed what we need to locally

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