Fixes #2914 revise vasa recta

[aleixpuigb]

Fixes #2914 revise vasa recta

[aleixpuigb]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-base.owl
• Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2024-08-29/uberon-base.owl
• Loaded from: file:/__w/uberon/uberon/src/ontology/uberon-base-main.owl/uberon-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-base.owl
• Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2024-08-29/uberon-base.owl
• Loaded from: file:/__w/uberon/uberon/src/ontology/uberon-base-pr.owl/uberon-base.owl

Ontology imports

Ontology annotations

inner medulla vasa recta ascending limb http://purl.obolibrary.org/obo/UBERON_0009092

Removed

• inner medulla vasa recta ascending limb label "inner medulla vasa recta ascending limb"

• inner medulla vasa recta ascending limb SubClassOf mesoderm-derived structure

Added

• inner medulla vasa recta ascending limb label "inner medulla ascending vasa recta"

inner medulla vasa recta descending limb http://purl.obolibrary.org/obo/UBERON_0009089

Removed

• inner medulla vasa recta descending limb label "inner medulla vasa recta descending limb"

• inner medulla vasa recta descending limb SubClassOf mesoderm-derived structure

Added

• inner medulla vasa recta descending limb label "inner medulla descending vasa recta"

inner renal medulla vasa recta http://purl.obolibrary.org/obo/UBERON_0004776

Removed

• inner renal medulla vasa recta SubClassOf renal venous blood vessel

• inner renal medulla vasa recta SubClassOf vein of abdomen

outer medulla vasa recta ascending limb http://purl.obolibrary.org/obo/UBERON_0009093

Removed

• outer medulla vasa recta ascending limb label "outer medulla vasa recta ascending limb"

• outer medulla vasa recta ascending limb SubClassOf mesoderm-derived structure

Added

• outer medulla vasa recta ascending limb label "outer medulla ascending vasa recta"

outer medulla vasa recta descending limb http://purl.obolibrary.org/obo/UBERON_0009090

Removed

• outer medulla vasa recta descending limb label "outer medulla vasa recta descending limb"

• outer medulla vasa recta descending limb SubClassOf mesoderm-derived structure

Added

• outer medulla vasa recta descending limb label "outer medulla descending vasa recta"

outer renal medulla vasa recta http://purl.obolibrary.org/obo/UBERON_0004775

Removed

• outer renal medulla vasa recta SubClassOf vein of abdomen

• outer renal medulla vasa recta SubClassOf renal venous blood vessel

vasa recta http://purl.obolibrary.org/obo/UBERON_0004726

Removed

• vasa recta hasRelatedSynonym "arteria recta"

  • hasDbXref "Wikipedia:Vasa_recta"

• vasa recta hasRelatedSynonym "arteriae rectae"

  • hasDbXref "Wikipedia:Vasa_recta"

• vasa recta hasExactSynonym "renal medullary capillary"

  • hasDbXref "EMAPA:30043"

• vasa recta hasExactSynonym "arteriolae rectae renis"

  • hasDbXref "FMA:TA"

  • hasSynonymType OMO_0003011

  • hasDbXref "FMA:72006"

• vasa recta IAO_0000116 "TODO - is this a vein or set of veins? in MA it is a venous blood vessel"

• vasa recta hasExactSynonym "straight arterioles of kidney"

  • hasDbXref "FMA:72006"

• vasa recta IAO_0000115 "In the blood supply of the kidney, the vasa recta renis (or straight arteries of kidney, or straight arterioles of kidney) form a series of straight capillaries in the medulla. They lie parallel to the loop of Henle. These vessels branch off the efferent arterioles of juxtamedullary nephrons (those nephrons closest to the medulla), enter the medulla, and surround the loop of Henle."

  • hasDbXref "Wikipedia:Vasa_recta"

• vasa recta hasExactSynonym "set of straight arterioles of kidney"

  • hasDbXref "FMA:72006"

• vasa recta SubClassOf renal vein

Added

• vasa recta hasNarrowSynonym "straight arterioles of kidney"

  • hasDbXref "FMA:72006"

• vasa recta hasNarrowSynonym "arteriolae rectae renis"

  • hasDbXref "FMA:TA"

  • hasSynonymType OMO_0003011

  • hasDbXref "FMA:72006"

• vasa recta hasNarrowSynonym "set of straight arterioles of kidney"

  • hasDbXref "FMA:72006"

• vasa recta hasNarrowSynonym "renal medullary capillary"

  • hasDbXref "EMAPA:30043"

• vasa recta IAO_0000115 "A group of microvessels that are part of the kidney. A vasa recta has a hairpin-like shape, entering the renal medulla as the straight arterioles and surrounds the loop of Henle, forming a capillary network. Finally it leaves the renal medulla to ascend to the cortex as the straight venules. The primary function of the vasa recta is to facilitate countercurrent exchange, which is essential for the kidney's ability to concentrate urine"

  • comment "PMID:23126245"

  • hasDbXref "Wikipedia:Vasa_recta"

• vasa recta SubClassOf kidney vasculature

vasa recta ascending limb http://purl.obolibrary.org/obo/UBERON_0009091

Removed

• vasa recta ascending limb SubClassOf mesoderm-derived structure

vasa recta descending limb http://purl.obolibrary.org/obo/UBERON_0009202

Removed

• vasa recta descending limb SubClassOf mesoderm-derived structure

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
• Version IRI: None
• Loaded from: file:/__w/uberon/uberon/master/src/ontology/uberon-edit.obo

Right

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
• Version IRI: None
• Loaded from: file:/__w/uberon/uberon/branch/src/ontology/uberon-edit.obo

Ontology imports

Ontology annotations

inner medulla vasa recta ascending limb http://purl.obolibrary.org/obo/UBERON_0009092

Removed

• inner medulla vasa recta ascending limb label "inner medulla vasa recta ascending limb"^^string

Added

• inner medulla vasa recta ascending limb label "inner medulla ascending vasa recta"^^string

inner medulla vasa recta descending limb http://purl.obolibrary.org/obo/UBERON_0009089

Removed

• inner medulla vasa recta descending limb label "inner medulla vasa recta descending limb"^^string

Added

• inner medulla vasa recta descending limb label "inner medulla descending vasa recta"^^string

outer medulla vasa recta ascending limb http://purl.obolibrary.org/obo/UBERON_0009093

Removed

• outer medulla vasa recta ascending limb label "outer medulla vasa recta ascending limb"^^string

Added

• outer medulla vasa recta ascending limb label "outer medulla ascending vasa recta"^^string

outer medulla vasa recta descending limb http://purl.obolibrary.org/obo/UBERON_0009090

Removed

• outer medulla vasa recta descending limb label "outer medulla vasa recta descending limb"^^string

Added

• outer medulla vasa recta descending limb label "outer medulla descending vasa recta"^^string

vasa recta http://purl.obolibrary.org/obo/UBERON_0004726

Removed

• vasa recta has_related_synonym "arteria recta"^^string

  • database_cross_reference "Wikipedia:Vasa_recta"^^string

• vasa recta has_related_synonym "arteriae rectae"^^string

  • database_cross_reference "Wikipedia:Vasa_recta"^^string

• vasa recta has exact synonym "renal medullary capillary"^^string

  • database_cross_reference "EMAPA:30043"^^string

• vasa recta has exact synonym "arteriolae rectae renis"^^string

  • has_synonym_type latin term

  • database_cross_reference "FMA:TA"^^string

  • database_cross_reference "FMA:72006"^^string

• vasa recta editor note "TODO - is this a vein or set of veins? in MA it is a venous blood vessel"^^string

• vasa recta has exact synonym "straight arterioles of kidney"^^string

  • database_cross_reference "FMA:72006"^^string

• vasa recta definition "In the blood supply of the kidney, the vasa recta renis (or straight arteries of kidney, or straight arterioles of kidney) form a series of straight capillaries in the medulla. They lie parallel to the loop of Henle. These vessels branch off the efferent arterioles of juxtamedullary nephrons (those nephrons closest to the medulla), enter the medulla, and surround the loop of Henle."^^string

  • database_cross_reference "Wikipedia:Vasa_recta"^^string

• vasa recta has exact synonym "set of straight arterioles of kidney"^^string

  • database_cross_reference "FMA:72006"^^string

• vasa recta SubClassOf renal vein

Added

• vasa recta has narrow synonym "straight arterioles of kidney"^^string

  • database_cross_reference "FMA:72006"^^string

• vasa recta has narrow synonym "arteriolae rectae renis"^^string

  • has_synonym_type latin term

  • database_cross_reference "FMA:TA"^^string

  • database_cross_reference "FMA:72006"^^string

• vasa recta has narrow synonym "set of straight arterioles of kidney"^^string

  • database_cross_reference "FMA:72006"^^string

• vasa recta has narrow synonym "renal medullary capillary"^^string

  • database_cross_reference "EMAPA:30043"^^string

• vasa recta definition "A group of microvessels that are part of the kidney. A vasa recta has a hairpin-like shape, entering the renal medulla as the straight arterioles and surrounds the loop of Henle, forming a capillary network. Finally it leaves the renal medulla to ascend to the cortex as the straight venules. The primary function of the vasa recta is to facilitate countercurrent exchange, which is essential for the kidney's ability to concentrate urine"^^string

  • database_cross_reference "Wikipedia:Vasa_recta"^^string

  • comment "PMID:23126245"^^string

• vasa recta SubClassOf kidney vasculature

[JABelfiore]

This all looks good to me!