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Remove Thoracic dorsal root ganglion as a part of thoracic ganglion #3475

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stappan opened this issue Feb 6, 2025 · 0 comments · May be fixed by #3477
Open

Remove Thoracic dorsal root ganglion as a part of thoracic ganglion #3475

stappan opened this issue Feb 6, 2025 · 0 comments · May be fixed by #3477
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uberon-classhierarchy

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@stappan
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stappan commented Feb 6, 2025

Uberon term

http://purl.obolibrary.org/obo/UBERON_0002835

Suggested revision and reasons

Dorsal root ganglia are not paravertebral/sympathetic ganglia. The thoracic ganglion currently have http://purl.obolibrary.org/obo/UBERON_0002835 as a subclass.

Recommendation:

  • remove thoracic dorsal root ganglion as a subclass of thoracic ganglion.
  • clarify the name of thoracic ganglion (http://purl.obolibrary.org/obo/UBERON_0002835) to thoracic paravertebral ganglion, since thoracic ganglion would more properly refer to ganglia that are within the thorax, including spinal, prevertebral and paravertebral ganglia
tgbugs added a commit that referenced this issue Feb 12, 2025
@tgbugs
remove incorrct subClassOf axiom on thoracic drg
d3d7291 
UBERON:0002835 ! thoracic dorsal root ganglion is not a subClassOf
UBERON:0000961 ! thoracic ganglion because a thoracic dorsal root
ganglion is not a paravertebral ganglion

closes #3475
@tgbugs tgbugs linked a pull request Feb 12, 2025 that will close this issue
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remove incorrct subClassOf axiom on thoracic drg obophenotype/uberon
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@stappan