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Update docs README #26

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will-moore opened this issue Aug 31, 2020 · 3 comments · Fixed by #25
Closed

Update docs README #26

will-moore opened this issue Aug 31, 2020 · 3 comments · Fixed by #25
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@will-moore
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The README says you can use --output but trying seems to suggest not.
Also need to rename 'masks' to 'labels' in the README (and elsewhere?)

$ omero zarr export Image:139615 --output /Users/wmoore/Desktop/ZARR/data/
/Users/wmoore/opt/miniconda3/envs/omero zarr export: error: unrecognized arguments: --output /Users/wmoore/Desktop/ZARR/data/

@joshmoore
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Thanks, @will-moore. I'll pick these up in #25

@joshmoore joshmoore self-assigned this Aug 31, 2020
@joshmoore
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Try: ``omero zarr --output ... ` then "export" or "masks.

As for "masks", I was trying to get across that we take omero.model.Masks from the server and turn them in Labels. Might need to make that explicit.

@will-moore
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Yep that worked:

$ omero zarr --output testoutput export Image:139615 
Using session for [email protected]:4064. Idle timeout: 10 min. Current group: read-only-1
loading plane c:0, t:0, z:0
loading plane c:1, t:0, z:0
loading plane c:2, t:0, z:0
Created testoutput/139615.zarr

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